HG10022379 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022379
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	Chr05: 23723390 .. 23724188 (-)
RNA-Seq Expression	HG10022379
Synteny	HG10022379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTATGATTTCTGCGTCTTAAGGATATTATTACAATTTTTCTTTTTGCATCTTTGATTCTTTGTTTTGATGTGTTGTTCGATCGGTTTGATTATTACTTTATGCTGAATTTCCGTTTTCTTGATTCGATTCGCCACTTTGATTTCGGTAAAGATTGTTCAATTCTGCGCTTCTATGCTTCCCACTTTGATTTGTTTATTCGTCTTCCTGAGATTCAAGTTGATTGATGGATTCTGTGCTTGTTATATTGGAGTGGCAGAAATCTGGATTTTCTACGAGATTTAATTAGTTGTTGGAGGTCGTTTCTGAATCAATAAATCCGTCTGCTGCATTCAAATATGTGAAGTATTTGAAGTAACTGGTGTTGGAGGAAACTACTTAATTGGTTTACTTTGTTTTGTTTGTTTGATTGATTAATATTGGATTTGAAGGTATTTACAAAATCTGTTGACATAAAGCAATGTTGTATGGTAAAAGACGATCGTAGTTAGATTCATAGTCCGATTGGTAAGGCAAGGCATCAGATTTACAGAGGGTACATCTTGTTGTTATCTCTTTGTGCAGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTCACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGCCTGCAGGAGATCCTGCCAAGGCACCGCCTGTAAGATACATTCATAATCCTTTTTCTATTTGGGCGTTGGATGGTTGA

mRNA sequence

ATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTCACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGCCTGCAGGAGATCCTGCCAAGGCACCGCCTGTAAGATACATTCATAATCCTTTTTCTATTTGGGCGTTGGATGGTTGA

Coding sequence (CDS)

ATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTCACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGCCTGCAGGAGATCCTGCCAAGGCACCGCCTGTAAGATACATTCATAATCCTTTTTCTATTTGGGCGTTGGATGGTTGA

Protein sequence

MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAKAPPVRYIHNPFSIWALDG

Homology

[Close]

BLAST of HG10022379 vs. NCBI nr
Match: XP_008463014.1 (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 9.2e-36
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRYIHNPFSIWALDG 79
          APPVRYIHN F IWALDG
Sbjct: 61 APPVRYIHNLFPIWALDG 78

[Close]

BLAST of HG10022379 vs. NCBI nr
Match: KAG7030269.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APPVRYIHNPFSIWALDG 79
          APPVRYIHNPFS   L+G
Sbjct: 61 APPVRYIHNPFSFVLLNG 78

[Close]

BLAST of HG10022379 vs. NCBI nr
Match: XP_038897827.1 (protein NOI4 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 8.4e-29
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPA DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAK 60

Query: 61 APPVRYI 68
          APP +++
Sbjct: 61 APPKKWL 67

[Close]

BLAST of HG10022379 vs. NCBI nr
Match: XP_008463015.1 (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRYI 68
          APP +++
Sbjct: 61 APPKKWL 67

[Close]

BLAST of HG10022379 vs. NCBI nr
Match: KAG7037321.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP  +PAK
Sbjct: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60

Query: 61 APPVRY 67
          APPVRY
Sbjct: 61 APPVRY 66

[Close]

BLAST of HG10022379 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AGDP 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +   GDP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 AKAPPVRYI 68
          +K  P +++
Sbjct: 61 SKPQPKKWL 69

[Close]

BLAST of HG10022379 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-06
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAH 52
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G       +   H
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTH 191

[Close]

BLAST of HG10022379 vs. ExPASy TrEMBL
Match: A0A1S3CI83 (RPM1-interacting protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501257 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.5e-36
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRYIHNPFSIWALDG 79
          APPVRYIHN F IWALDG
Sbjct: 61 APPVRYIHNLFPIWALDG 78

[Close]

BLAST of HG10022379 vs. ExPASy TrEMBL
Match: A0A1S3CI91 (RPM1-interacting protein 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501257 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRYI 68
          APP +++
Sbjct: 61 APPKKWL 67

[Close]

BLAST of HG10022379 vs. ExPASy TrEMBL
Match: A0A6J1CEA3 (RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP  DP+K
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSK 60

Query: 61 APPVRYI 68
          APP +++
Sbjct: 61 APPKKWL 67

[Close]

BLAST of HG10022379 vs. ExPASy TrEMBL
Match: A0A5A7TZ14 (RPM1-interacting protein 4-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001080 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of HG10022379 vs. ExPASy TrEMBL
Match: A0A6J1ID15 (uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.5e-27
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60

Query: 61 APPVRYI 68
          APP +++
Sbjct: 61 APPKKWL 67

[Close]

BLAST of HG10022379 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-23
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AGDP 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +   GDP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 AKAPPVR 66
          +K  PV+
Sbjct: 61 SKPQPVK 67

[Close]

BLAST of HG10022379 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-22
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AGDPAK 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +   GDP+K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 APPVR 66
            PV+
Sbjct: 79 PQPVK 83

[Close]

BLAST of HG10022379 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 100.1 bits (248), Expect = 8.1e-22
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AGDPAK 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +   GDP+K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 APPVRYI 68
            P +++
Sbjct: 79 PQPKKWL 85

[Close]

BLAST of HG10022379 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAGDPAK 60
          M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK +      G+  +
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLE 60

Query: 61 APPVRY 67
           P  ++
Sbjct: 61 KPAKKW 66

[Close]

BLAST of HG10022379 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 45
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

The following BLAST results are available for this feature:

BLAST of HG10022379 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463014.1	9.2e-36	94.87	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
KAG7030269.1	4.3e-33	89.74	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038897827.1	8.4e-29	92.54	protein NOI4 [Benincasa hispida]	[more]
XP_008463015.1	1.2e-27	91.04	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
KAG7037321.1	1.6e-27	92.42	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10022379 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	1.8e-21	72.46	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	2.7e-06	42.86	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of HG10022379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI83	4.5e-36	94.87	RPM1-interacting protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035012...	[more]
A0A1S3CI91	5.9e-28	91.04	RPM1-interacting protein 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035012...	[more]
A0A6J1CEA3	2.2e-27	88.06	RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 S...	[more]
A0A5A7TZ14	2.9e-27	96.83	RPM1-interacting protein 4-like isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1ID15	8.5e-27	88.06	uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10022379 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	9.6e-23	76.12	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	6.2e-22	76.92	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	8.1e-22	73.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	1.7e-19	66.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.5e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 e-value: 8.4E-23 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..63
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 3..66
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022379.1	HG10022379.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane