HG10022370 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022370
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Poly(A)-specific ribonuclease
Location	Chr05: 23661547 .. 23662398 (+)
RNA-Seq Expression	HG10022370
Synteny	HG10022370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCATTCGACAAGTTTGGTCTCATAATTTGTTTCAAGAATTGGCCGTTCTCGACGGTTGTCTCTCGAAGTTTCCGGTGGTCGCTTTCGACACCGAGTTCCCCGGCTTTCTCCGATCCACCCCAAGAGATGCTCCATTAGAACAAACCTACGAAGATTTAAAATTCAATGTGAATCACTTAAAGCCTCTTCAATTGGGTCTCACTTTAACCGACGAGAATGGAAATGTCGGCATGACATGGGAGTTCAACTTCAGTGATTTTGATGAGACTGATGACATCCATAGTCCGTCATCTATACAGTTCTTGAAGAACAGAGGATTTGATTTCAACAAACTAAGAAAAGAAGGGATTCCATCTGGTGTATTCCGAAGGGCATTTTTACCCCTTTGTTGTAGTAATCGAATCACCAAATGGGTCACCTTCCACGGCTTCTACGACGTCGCTTACCTCCTCAACCTAATGATGATCAAATGCATGCCGGAGTCCGTCATGGAATTTGCCGCCAAAGCACAGCGTCTTCTCGGCACTGTTTTCGACCTCAAGCACATGGCTCGCTACAGCAACAAATTACAAAATGGCGAACTTGGGCTTGAAAAGTTAGCCAAGTTACTCAATGTGGAGCGTAACGGAATTGCCCATCATGCTGGTTCTGATAGCTTGTTGACGGCTTCTGCGTATGCAAAGATCAAGAACGTGTTCAAGATTTCGACAAAGCATTTTGATGGGTATCTGTATGGCTTGCATTATAGAATCCAACGGCCAGTTCATGGGAACATCATCCGTCCATTTTTTCTGTCACCTTTTGGACCTAGTAGGTTTTATATTGGTAATGTTATGGTTAATTAG

mRNA sequence

ATGGCGATCATTCGACAAGTTTGGTCTCATAATTTGTTTCAAGAATTGGCCGTTCTCGACGGTTGTCTCTCGAAGTTTCCGGTGGTCGCTTTCGACACCGAGTTCCCCGGCTTTCTCCGATCCACCCCAAGAGATGCTCCATTAGAACAAACCTACGAAGATTTAAAATTCAATGTGAATCACTTAAAGCCTCTTCAATTGGGTCTCACTTTAACCGACGAGAATGGAAATGTCGGCATGACATGGGAGTTCAACTTCAGTGATTTTGATGAGACTGATGACATCCATAGTCCGTCATCTATACAGTTCTTGAAGAACAGAGGATTTGATTTCAACAAACTAAGAAAAGAAGGGATTCCATCTGGTGTATTCCGAAGGGCATTTTTACCCCTTTGTTGTAGTAATCGAATCACCAAATGGGTCACCTTCCACGGCTTCTACGACGTCGCTTACCTCCTCAACCTAATGATGATCAAATGCATGCCGGAGTCCGTCATGGAATTTGCCGCCAAAGCACAGCGTCTTCTCGGCACTGTTTTCGACCTCAAGCACATGGCTCGCTACAGCAACAAATTACAAAATGGCGAACTTGGGCTTGAAAAGTTAGCCAAGTTACTCAATGTGGAGCGTAACGGAATTGCCCATCATGCTGGTTCTGATAGCTTGTTGACGGCTTCTGCGTATGCAAAGATCAAGAACGTGTTCAAGATTTCGACAAAGCATTTTGATGGGTATCTGTATGGCTTGCATTATAGAATCCAACGGCCAGTTCATGGGAACATCATCCGTCCATTTTTTCTGTCACCTTTTGGACCTAGTAGGTTTTATATTGGTAATGTTATGGTTAATTAG

Coding sequence (CDS)

ATGGCGATCATTCGACAAGTTTGGTCTCATAATTTGTTTCAAGAATTGGCCGTTCTCGACGGTTGTCTCTCGAAGTTTCCGGTGGTCGCTTTCGACACCGAGTTCCCCGGCTTTCTCCGATCCACCCCAAGAGATGCTCCATTAGAACAAACCTACGAAGATTTAAAATTCAATGTGAATCACTTAAAGCCTCTTCAATTGGGTCTCACTTTAACCGACGAGAATGGAAATGTCGGCATGACATGGGAGTTCAACTTCAGTGATTTTGATGAGACTGATGACATCCATAGTCCGTCATCTATACAGTTCTTGAAGAACAGAGGATTTGATTTCAACAAACTAAGAAAAGAAGGGATTCCATCTGGTGTATTCCGAAGGGCATTTTTACCCCTTTGTTGTAGTAATCGAATCACCAAATGGGTCACCTTCCACGGCTTCTACGACGTCGCTTACCTCCTCAACCTAATGATGATCAAATGCATGCCGGAGTCCGTCATGGAATTTGCCGCCAAAGCACAGCGTCTTCTCGGCACTGTTTTCGACCTCAAGCACATGGCTCGCTACAGCAACAAATTACAAAATGGCGAACTTGGGCTTGAAAAGTTAGCCAAGTTACTCAATGTGGAGCGTAACGGAATTGCCCATCATGCTGGTTCTGATAGCTTGTTGACGGCTTCTGCGTATGCAAAGATCAAGAACGTGTTCAAGATTTCGACAAAGCATTTTGATGGGTATCTGTATGGCTTGCATTATAGAATCCAACGGCCAGTTCATGGGAACATCATCCGTCCATTTTTTCTGTCACCTTTTGGACCTAGTAGGTTTTATATTGGTAATGTTATGGTTAATTAG

Protein sequence

MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFDGYLYGLHYRIQRPVHGNIIRPFFLSPFGPSRFYIGNVMVN

Homology

[Close]

BLAST of HG10022370 vs. NCBI nr
Match: XP_038890962.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 346.7 bits (888), Expect = 1.9e-91
Identity = 169/255 (66.27%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M ++RQVWSHNL++ELA+ +  LS+FPV+  DTEFPGF+RSTPR AP E  Y+DLKFN+N
Sbjct: 1   MDLVRQVWSHNLYRELAIFNVYLSRFPVIVIDTEFPGFIRSTPRGAPKEHLYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIP 120
           HLK LQLGLTL DENGNVGMTWEF FSDFDE  D+ +P+SIQFLKN+G DF K R+EGI 
Sbjct: 61  HLKILQLGLTLVDENGNVGMTWEFTFSDFDEQTDLSNPTSIQFLKNKGLDFKKQREEGIR 120

Query: 121 SGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVF 180
           S  F+ AFLP+ CSNRI KWVTFHG YDVAYLL LM+IK MPESV+EFA  A+  LGTV 
Sbjct: 121 SAEFQLAFLPILCSNRIVKWVTFHGIYDVAYLLKLMVIKSMPESVVEFAIIARCFLGTVS 180

Query: 181 DLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHH-AGSDSLLTASAYAKIKNVFKIST 240
           DLK++ R    L NGELGL+KLAKLLN+  +   HH AG DSLL ASAYAK+K + + S+
Sbjct: 181 DLKYIIRNCEYLLNGELGLKKLAKLLNIVNDIPTHHLAGFDSLLIASAYAKMKKMHEFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           ++ DG+LYGL+YRI+
Sbjct: 241 ENLDGFLYGLYYRIR 255

[Close]

BLAST of HG10022370 vs. NCBI nr
Match: XP_008454486.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 2.9e-87
Identity = 167/255 (65.49%), Postives = 198/255 (77.65%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKN-RGFDFNKLRKEGI 120
           HLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+SIQ+LKN +GF+F K RK+GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTV 180
           PS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 FDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIST 240
            DLKHM R    L NGELGL++LA+LLNV  N    + GSDSLL A AYAK+K   K S+
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           +  DG+LYG +YRI+
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of HG10022370 vs. NCBI nr
Match: KAA0044544.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 4.9e-87
Identity = 168/255 (65.88%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M+ +RQVW HNL QEL +L+  L KFPV+A DTEFPGFLRST R AP E  Y+DLKFN+N
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKN-RGFDFNKLRKEGI 120
           HLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+SIQ+LKN +GF+F K RK+GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTV 180
           PS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 FDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIST 240
            DLKHM R    L NGELGL++LA+LLNV  N    + GSDSLL A AYAK+K   K S+
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           +  DG+LYG HYRI+
Sbjct: 241 EITDGFLYGFHYRIR 253

[Close]

BLAST of HG10022370 vs. NCBI nr
Match: XP_004151393.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.1e-83
Identity = 161/252 (63.89%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLK 63
           +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 64  PLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLK-NRGFDFNKLRKEGIPSG 123
            LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+LK N+GF+F K RK+GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 124 VFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDL 183
            FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 184 KHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHF 243
           K+M  +  +L  GELGL++LA+LL+V  N      GSDSLL A AY K+K + K+S+++ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKKL-KLSSENT 244

Query: 244 DGYLYGLHYRIQ 255
            G+LYG  YRI+
Sbjct: 245 GGFLYGFQYRIR 253

[Close]

BLAST of HG10022370 vs. NCBI nr
Match: KAE8649090.1 (hypothetical protein Csa_014788 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 1.8e-81
Identity = 160/259 (61.78%), Postives = 195/259 (75.29%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLK 63
           +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 64  PLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLK-NRGFDFNKLRKEGIPSG 123
            LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+LK N+GF+F K RK+GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 124 VFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDL 183
            FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 184 KHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHF 243
           K+M  +  +L  GELGL++LA+LL+V  N      GSDSLL A AY K+K + K+S+++ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKKL-KLSSENT 244

Query: 244 DGYLYGLHYRIQRPVHGNI 262
            G+LY    +    V G I
Sbjct: 245 GGFLYANDDQSHAGVQGGI 260

[Close]

BLAST of HG10022370 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.7e-46
Identity = 99/251 (39.44%), Postives = 152/251 (60.56%), Query Frame = 0


Query: 3   IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHL 62
           + R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T  D+  ++ Y  +K NV + 
Sbjct: 8   LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENT 67

Query: 63  KPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSG 122
           K +Q G TL +  G +G  WE NFS+F +  D  +  SI+FL+  G D  K+R EG+   
Sbjct: 68  KLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGV--D 127

Query: 123 VFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGT 182
           +F   F P    +  S +  ++VTF G YD AY L+++    +PE+  EFA +  ++ G 
Sbjct: 128 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 187

Query: 183 VFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS 242
           V+D K MA +   L    LGL KLA+LL + R G AHHAGSDSL+TA  + K+K+V++  
Sbjct: 188 VYDTKVMAGFCEGL-GEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 247

Query: 243 TKHFDGYLYGL 250
           ++   G +YG+
Sbjct: 248 SRFARGLIYGI 254

[Close]

BLAST of HG10022370 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 4.1e-44
Identity = 109/267 (40.82%), Postives = 145/267 (54.31%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNH 63
           IR+VW+ NL  E+A++   +  FP VA DTEFPG +           E  YE LK NVN 
Sbjct: 12  IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71

Query: 64  LKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNK 123
           LK +QLGLT +DE GN+           W+FNF +FD   DI++  SI+ L+  G DF K
Sbjct: 72  LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVK 131

Query: 124 LRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKA 183
             + GI S  F    +      N    WVTFH  YD  YLL L+  + +PE+   F    
Sbjct: 132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMI 191

Query: 184 QRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI- 243
                 V+D+KH+ ++ N L     GL KLA+LL+VER GI H AGSDSLLT+  + K+ 
Sbjct: 192 SVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQ 251

Query: 244 KNVFKISTKHFDGYLYGLHYRIQRPVH 259
           +N F  S + + G LYGL     + VH
Sbjct: 252 ENFFIGSMEKYSGVLYGLGVENGQIVH 275

[Close]

BLAST of HG10022370 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.1e-44
Identity = 98/223 (43.95%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 16  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDEN 75
           +++++ CL  +  +A DTEFP  LR T + A  E+ Y D+ F+V+  K +QLGLTL D N
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 76  GNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIP-SGVFRRAFLPLCCS 135
           G +G TWE NFSDF   DD  +  SI+FL+  G D  K+R+EGI   G F   F  L  +
Sbjct: 61  GRIGGTWEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 136 NRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQN 195
            R   WVTFHG YD+AYLL     + +P +   F+    R+LG+V+DLK MA     L +
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-S 180

Query: 196 GELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKI 238
             LGLE LA    + R G AHHAGS++ LTA  +AK+ + F +
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of HG10022370 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-43
Identity = 105/257 (40.86%), Postives = 141/257 (54.86%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNH 63
           IR+VW+ NL +E+ ++   +  FP VA DTEFPG +        +  +  YE LK NVN 
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71

Query: 64  LKPLQLGLTLTDENGNVG-------MTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKL 123
           LK +QLGLT ++E GN+          W+FNF +FD   DI +  SI+ LK  G D  K 
Sbjct: 72  LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131

Query: 124 RKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQ 183
             +GI S  F    +      N    WVTFH  YD  YLL L+  + +P+S  +F     
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLIN 191

Query: 184 RLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKN 243
               TV+D+KH+ ++ N L     GL KLA+LL VER GI H AGSDSLLT+  + K+K 
Sbjct: 192 VYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKE 251

Query: 244 VFKISTKH-FDGYLYGL 250
            F +   H + G LYGL
Sbjct: 252 NFFVGPLHKYSGVLYGL 265

[Close]

BLAST of HG10022370 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-43
Identity = 102/263 (38.78%), Postives = 146/263 (55.51%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--------PRDAPLEQTYEDL 63
           IR+VW+HNL QE+A+++  +  FP VA DTEFPG +  T        P     E  Y+ L
Sbjct: 16  IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75

Query: 64  KFNVNHLKPLQLGLTLTDENGNV-------GMTWEFNFSDFDETDDIHSPSSIQFLKNRG 123
           K NVN LK +QLGLTL+DE GN+          W+FNF +F+   D+ +  SI+ L+   
Sbjct: 76  KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135

Query: 124 FDFNKLRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVME 183
            D  K  + G+ +  F    +      N    WVTFH  YD  YLL L+  K +PE + +
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISD 195

Query: 184 FAAKAQRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASA 243
           F  + ++    V+D+K++  +   L     GLEK+A+LL V+R GI+H AGSDSLLT   
Sbjct: 196 FFDQMEKFFPVVYDIKYLMGFCTNLYG---GLEKIAELLGVKRVGISHQAGSDSLLTLRT 255

Query: 244 YAKIKNVFKI-STKHFDGYLYGL 250
           + K+K  F   S   + G+L+GL
Sbjct: 256 FIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of HG10022370 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.4e-87
Identity = 167/255 (65.49%), Postives = 198/255 (77.65%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKN-RGFDFNKLRKEGI 120
           HLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+SIQ+LKN +GF+F K RK+GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTV 180
           PS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 FDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIST 240
            DLKHM R    L NGELGL++LA+LLNV  N    + GSDSLL A AYAK+K   K S+
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           +  DG+LYG +YRI+
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of HG10022370 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.4e-87
Identity = 167/255 (65.49%), Postives = 198/255 (77.65%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M+ +R+VW HN  QELA+L+  L KFPV+A DTEFPGFLRSTPR AP E  Y+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKN-RGFDFNKLRKEGI 120
           HLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+SIQ+LKN +GF+F K RK+GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTV 180
           PS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 FDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIST 240
            DLKHM R    L NGELGL++LA+LLNV  N    + GSDSLL A AYAK+K   K S+
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           +  DG+LYG +YRI+
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of HG10022370 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 2.4e-87
Identity = 168/255 (65.88%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MAIIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVN 60
           M+ +RQVW HNL QEL +L+  L KFPV+A DTEFPGFLRST R AP E  Y+DLKFN+N
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 61  HLKPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKN-RGFDFNKLRKEGI 120
           HLK LQLGLTL DEN +VG++W F FSDFDE  D  SP+SIQ+LKN +GF+F K RK+GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSGVFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTV 180
           PS  FRRAFLP+  SNRITKW+TFHG YDVAYLL LMMI+ MPES++EFA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 FDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIST 240
            DLKHM R    L NGELGL++LA+LLNV  N    + GSDSLL A AYAK+K   K S+
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 241 KHFDGYLYGLHYRIQ 255
           +  DG+LYG HYRI+
Sbjct: 241 EITDGFLYGFHYRIR 253

[Close]

BLAST of HG10022370 vs. ExPASy TrEMBL
Match: A0A0A0KTU4 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 5.5e-84
Identity = 161/252 (63.89%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLK 63
           +RQVW HNL QELA+L+  L KFPV+  DTEFPGFLRSTPR AP E  Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 64  PLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLK-NRGFDFNKLRKEGIPSG 123
            LQLGLTL DEN +VG++W F FSDFDE  D+ SP+S+Q+LK N+GF+F K RK+GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 124 VFRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDL 183
            FRRAFLP+  SNRITKW+TFHG YDVAYLL LM+IK MPES++EFA  AQR LGTV DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 184 KHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHF 243
           K+M  +  +L  GELGL++LA+LL+V  N      GSDSLL A AY K+K + K+S+++ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKKL-KLSSENT 244

Query: 244 DGYLYGLHYRIQ 255
            G+LYG  YRI+
Sbjct: 245 GGFLYGFQYRIR 253

[Close]

BLAST of HG10022370 vs. ExPASy TrEMBL
Match: A0A6J1HSR3 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.6e-78
Identity = 149/251 (59.36%), Postives = 181/251 (72.11%), Query Frame = 0


Query: 5   RQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKP 64
           R VWSHNL +E+ ++  CLS+FP+VA DTEFPGFLR TP+    E+ Y+ L+FNVN L  
Sbjct: 17  RDVWSHNLLEEIELMKHCLSEFPIVAMDTEFPGFLRCTPKGVSDEEFYQCLQFNVNRLSI 76

Query: 65  LQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSI-QFLKNRGFDFNKLRKEGIPSGV 124
           LQLGLTLTDENG +GMTWEFNF DFD+  ++    S+  FLKN+GF+FN LR  GI    
Sbjct: 77  LQLGLTLTDENGRIGMTWEFNFQDFDKISNMEGVYSLDSFLKNKGFNFNILRSCGISPEE 136

Query: 125 FRRAFLPLCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLK 184
           FRR F P+  S RI +W+TFHG YD+AYL+    I CMP S+  FA  A  LLGTV DLK
Sbjct: 137 FRRQFNPILRSGRIQRWITFHGLYDIAYLMKFTNIICMPTSMSNFAIMAAHLLGTVTDLK 196

Query: 185 HMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKISTKHFD 244
           HMARYS+ L NG LGL+KLAK+L V R G AH AGSDSLLTAS YAK++ + K+  K  +
Sbjct: 197 HMARYSDYLLNGNLGLKKLAKMLQVNRIGTAHFAGSDSLLTASVYAKMRVIMKVDPKIHE 256

Query: 245 GYLYGLHYRIQ 255
           G+LYGL Y IQ
Sbjct: 257 GFLYGLPYPIQ 267

[Close]

BLAST of HG10022370 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 4.1e-47
Identity = 99/251 (39.44%), Postives = 152/251 (60.56%), Query Frame = 0


Query: 3   IIRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHL 62
           + R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T  D+  ++ Y  +K NV + 
Sbjct: 8   LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENT 67

Query: 63  KPLQLGLTLTDENGNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIPSG 122
           K +Q G TL +  G +G  WE NFS+F +  D  +  SI+FL+  G D  K+R EG+   
Sbjct: 68  KLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGV--D 127

Query: 123 VFRRAFLP----LCCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGT 182
           +F   F P    +  S +  ++VTF G YD AY L+++    +PE+  EFA +  ++ G 
Sbjct: 128 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 187

Query: 183 VFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKIS 242
           V+D K MA +   L    LGL KLA+LL + R G AHHAGSDSL+TA  + K+K+V++  
Sbjct: 188 VYDTKVMAGFCEGL-GEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 247

Query: 243 TKHFDGYLYGL 250
           ++   G +YG+
Sbjct: 248 SRFARGLIYGI 254

[Close]

BLAST of HG10022370 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-45
Identity = 109/267 (40.82%), Postives = 145/267 (54.31%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNH 63
           IR+VW+ NL  E+A++   +  FP VA DTEFPG +           E  YE LK NVN 
Sbjct: 12  IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71

Query: 64  LKPLQLGLTLTDENGNVG--------MTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNK 123
           LK +QLGLT +DE GN+           W+FNF +FD   DI++  SI+ L+  G DF K
Sbjct: 72  LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVK 131

Query: 124 LRKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKA 183
             + GI S  F    +      N    WVTFH  YD  YLL L+  + +PE+   F    
Sbjct: 132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMI 191

Query: 184 QRLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKI- 243
                 V+D+KH+ ++ N L     GL KLA+LL+VER GI H AGSDSLLT+  + K+ 
Sbjct: 192 SVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQ 251

Query: 244 KNVFKISTKHFDGYLYGLHYRIQRPVH 259
           +N F  S + + G LYGL     + VH
Sbjct: 252 ENFFIGSMEKYSGVLYGLGVENGQIVH 275

[Close]

BLAST of HG10022370 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-45
Identity = 98/223 (43.95%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 16  LAVLDGCLSKFPVVAFDTEFPGFLRSTPRDAPLEQTYEDLKFNVNHLKPLQLGLTLTDEN 75
           +++++ CL  +  +A DTEFP  LR T + A  E+ Y D+ F+V+  K +QLGLTL D N
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 76  GNVGMTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKLRKEGIP-SGVFRRAFLPLCCS 135
           G +G TWE NFSDF   DD  +  SI+FL+  G D  K+R+EGI   G F   F  L  +
Sbjct: 61  GRIGGTWEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 136 NRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQRLLGTVFDLKHMARYSNKLQN 195
            R   WVTFHG YD+AYLL     + +P +   F+    R+LG+V+DLK MA     L +
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-S 180

Query: 196 GELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKNVFKI 238
             LGLE LA    + R G AHHAGS++ LTA  +AK+ + F +
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of HG10022370 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 105/257 (40.86%), Postives = 141/257 (54.86%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNH 63
           IR+VW+ NL +E+ ++   +  FP VA DTEFPG +        +  +  YE LK NVN 
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71

Query: 64  LKPLQLGLTLTDENGNVG-------MTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKL 123
           LK +QLGLT ++E GN+          W+FNF +FD   DI +  SI+ LK  G D  K 
Sbjct: 72  LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131

Query: 124 RKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQ 183
             +GI S  F    +      N    WVTFH  YD  YLL L+  + +P+S  +F     
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLIN 191

Query: 184 RLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKN 243
               TV+D+KH+ ++ N L     GL KLA+LL VER GI H AGSDSLLT+  + K+K 
Sbjct: 192 VYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKE 251

Query: 244 VFKISTKH-FDGYLYGL 250
            F +   H + G LYGL
Sbjct: 252 NFFVGPLHKYSGVLYGL 265

[Close]

BLAST of HG10022370 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 105/257 (40.86%), Postives = 141/257 (54.86%), Query Frame = 0


Query: 4   IRQVWSHNLFQELAVLDGCLSKFPVVAFDTEFPGFLRST--PRDAPLEQTYEDLKFNVNH 63
           IR+VW+ NL +E+ ++   +  FP VA DTEFPG +        +  +  YE LK NVN 
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71

Query: 64  LKPLQLGLTLTDENGNVG-------MTWEFNFSDFDETDDIHSPSSIQFLKNRGFDFNKL 123
           LK +QLGLT ++E GN+          W+FNF +FD   DI +  SI+ LK  G D  K 
Sbjct: 72  LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131

Query: 124 RKEGIPSGVFRRAFLPL-CCSNRITKWVTFHGFYDVAYLLNLMMIKCMPESVMEFAAKAQ 183
             +GI S  F    +      N    WVTFH  YD  YLL L+  + +P+S  +F     
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLIN 191

Query: 184 RLLGTVFDLKHMARYSNKLQNGELGLEKLAKLLNVERNGIAHHAGSDSLLTASAYAKIKN 243
               TV+D+KH+ ++ N L     GL KLA+LL VER GI H AGSDSLLT+  + K+K 
Sbjct: 192 VYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKE 251

Query: 244 VFKISTKH-FDGYLYGL 250
            F +   H + G LYGL
Sbjct: 252 NFFVGPLHKYSGVLYGL 265

The following BLAST results are available for this feature:

BLAST of HG10022370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890962.1	1.9e-91	66.27	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_008454486.1	2.9e-87	65.49	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039....	[more]
KAA0044544.1	4.9e-87	65.88	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]
XP_004151393.1	1.1e-83	63.89	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]	[more]
KAE8649090.1	1.8e-81	61.78	hypothetical protein Csa_014788 [Cucumis sativus]	[more]

BLAST of HG10022370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	5.7e-46	39.44	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	4.1e-44	40.82	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	4.1e-44	43.95	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	1.6e-43	40.86	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9S9P2	3.5e-43	38.78	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of HG10022370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D333	1.4e-87	65.49	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	1.4e-87	65.49	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]
A0A5A7TN62	2.4e-87	65.88	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KTU4	5.5e-84	63.89	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV...	[more]
A0A6J1HSR3	1.6e-78	59.36	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 S...	[more]

BLAST of HG10022370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	4.1e-47	39.44	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	2.9e-45	40.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	2.9e-45	43.95	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.1e-44	40.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.1e-44	40.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 8..120 e-value: 5.1E-14 score: 52.3
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 140..225 e-value: 9.3E-8 score: 31.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..252 e-value: 8.4E-79 score: 266.4
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 2..260
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 2..260
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022370.1	HG10022370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity