HG10022366 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022366
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Serine-rich protein-related, putative
Location	Chr05: 23622908 .. 23623237 (-)
RNA-Seq Expression	HG10022366
Synteny	HG10022366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTAAACCAGATCATAAAGCTCCAAGGCCCAACGACAGAAACAACCATAATCACCACCACAAAATGCCATTCACAGAGTTCAATTTAGAAGAGCTTAAGCAAACTTCTAACCTGCTCGTTTCCCCGTCGTCGCAATCCATAGTGGCGCCCAAGGCTCCTTCCTCTGCCAAGGCGAATTGTCTCTGTTCTCCCACCACTCACATTGGCTCCTTCCGCTGCCGGCACCATCGGCATACTGGTATGCTCCGCGGCGGCTCTGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAATCTACCGACATTATGGGATCCTTTACGCCTTGA

mRNA sequence

ATGGATCCTAAACCAGATCATAAAGCTCCAAGGCCCAACGACAGAAACAACCATAATCACCACCACAAAATGCCATTCACAGAGTTCAATTTAGAAGAGCTTAAGCAAACTTCTAACCTGCTCGTTTCCCCGTCGTCGCAATCCATAGTGGCGCCCAAGGCTCCTTCCTCTGCCAAGGCGAATTGTCTCTGTTCTCCCACCACTCACATTGGCTCCTTCCGCTGCCGGCACCATCGGCATACTGGTATGCTCCGCGGCGGCTCTGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAATCTACCGACATTATGGGATCCTTTACGCCTTGA

Coding sequence (CDS)

ATGGATCCTAAACCAGATCATAAAGCTCCAAGGCCCAACGACAGAAACAACCATAATCACCACCACAAAATGCCATTCACAGAGTTCAATTTAGAAGAGCTTAAGCAAACTTCTAACCTGCTCGTTTCCCCGTCGTCGCAATCCATAGTGGCGCCCAAGGCTCCTTCCTCTGCCAAGGCGAATTGTCTCTGTTCTCCCACCACTCACATTGGCTCCTTCCGCTGCCGGCACCATCGGCATACTGGTATGCTCCGCGGCGGCTCTGTTGGCTCTAATCTCTCCGATTTGGCTCGTAAATCTACCGACATTATGGGATCCTTTACGCCTTGA

Protein sequence

MDPKPDHKAPRPNDRNNHNHHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAPKAPSSAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGSFTP

Homology

[Close]

BLAST of HG10022366 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 9.6e-39
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHN--------HHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAP 60
           MD K DH+APRPNDRNNHN        HHHKM FT+ NLE+LKQ   +LVSPS  S +A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGSFTP 110
           + PSSAKANCLCSPTTHIGSFRCRHHRH+GM+RGGSVGSNLSDL RK T+I+GSF+P
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of HG10022366 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHNHHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAPKAPSSAKA 60
           MD KPDH+APRP DRNN NHHHK  FT+F+LE+ KQ +NLL S  S+S+ APKAPSSAKA
Sbjct: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSL-APKAPSSAKA 60

Query: 61  NCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGSFTP 110
           +CLCSPTTHIGSFRCRHHRHTGMLRG SVGSNLS+LA KSTD+M S++P
Sbjct: 61  SCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

[Close]

BLAST of HG10022366 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHNHHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAPKAPSSAKA 60
           MD KPDH+APRP  R++ +HH+K+ FT+F+LE+LK++  +LVSPS  S     +P +AK 
Sbjct: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSP-AAKG 60

Query: 61  NCLCSPTTHIGSFRCRHHRHT-GMLRGGSVGSNLSDLARKSTDIMG 106
           +CLCSPTTHIGSFRCRHHR + G+LRGGSVGSNLSDL RKS++ MG
Sbjct: 61  SCLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFMG 105

[Close]

BLAST of HG10022366 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-25
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 24  MPFTEFNLEELKQTS-NLLVSPSSQSIVAPKAPSSAKANCLCSPTTHIGSFRCRHHRHTG 83
           M  TE NL +LK  + +LLVSPS  S  A K PSSAKANCLCSPTTHIGSFRCRHHRH G
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPS-TATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 60

Query: 84  MLRGGSVGSNLSDLARKSTDIMGSFTP 110
           M+RGGSVGSNLSDLARK T+IMG F+P
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of HG10022366 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 97.4 bits (241), Expect = 7.9e-17
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHNHHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAPKAPSSAKA 60
           MD K + ++P+    NN N   K+P  + NL ELK+ ++LL SP +Q  V     SS + 
Sbjct: 1   MDEKVEQRSPQKIKENNMNFKLKIP--DINLNELKKQTHLLASPRAQRAVTKS--SSTRW 60

Query: 61  NCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGS 107
           NCLCSPTTH GSFRCRHHR + MLRGGSVGSNLS+LARK   I  S
Sbjct: 61  NCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]

BLAST of HG10022366 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHN--------HHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAP 60
           MD K DH+APRPNDRNNHN        HHHKM FT+ NLE+LKQ   +LVSPS  S +A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGSFTP 110
           + PSSAKANCLCSPTTHIGSFRCRHHRH+GM+RGGSVGSNLSDL RK T+I+GSF+P
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

[Close]

BLAST of HG10022366 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 24  MPFTEFNLEELKQTS-NLLVSPSSQSIVAPKAPSSAKANCLCSPTTHIGSFRCRHHRHTG 83
           M  TE NL +LK  + +LLVSPS  S  A K PSSAKANCLCSPTTHIGSFRCRHHRH G
Sbjct: 1   MAITELNLADLKHNNHHLLVSPSPPS-TATKTPSSAKANCLCSPTTHIGSFRCRHHRHAG 60

Query: 84  MLRGGSVGSNLSDLARKSTDIMGSFTP 110
           M+RGGSVGSNLSDLARK T+IMG F+P
Sbjct: 61  MIRGGSVGSNLSDLARKPTEIMGPFSP 86

[Close]

BLAST of HG10022366 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-17
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 1   MDPKPDHKAPRPNDRNNHNHHHKMPFTEFNLEELKQTSNLLVSPSSQSIVAPKAPSSAKA 60
           MD K + ++P+    NN N   K+P  + NL ELK+ ++LL SP +Q  V     SS + 
Sbjct: 1   MDEKVEQRSPQKIKENNMNFKLKIP--DINLNELKKQTHLLASPRAQRAVTKS--SSTRW 60

Query: 61  NCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDIMGS 107
           NCLCSPTTH GSFRCRHHR + MLRGGSVGSNLS+LARK   I  S
Sbjct: 61  NCLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDS 102

[Close]

BLAST of HG10022366 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 12  PNDRNNHNHHHKMPFTEFNLEELKQ-TSNLLVSPSSQSIVAPKAPSSAKANCLCSPTTHI 71
           PN++    + +K+   E NLE+ K+ T  L+VSP +++    K+ SS ++NCLCSPTTH+
Sbjct: 9   PNNKEMSINKYKLNLPEINLEDFKKHTHILVVSPRARTPSVTKS-SSTRSNCLCSPTTHV 68

Query: 72  GSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDI 104
           GSFRCRHHR  GMLRGGSVGSNL+DL RKS+ I
Sbjct: 69  GSFRCRHHRSLGMLRGGSVGSNLADLGRKSSSI 100

[Close]

BLAST of HG10022366 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MDPKPDHK-APRPNDRNNHNHHHKMPFTEFNLEELKQ-TSNLLVSPSSQSIVAPKAPSSA 60
           MD K + + +  PN++    + +K+   E NLE+ K+ T  L+VSP +++    K+ SS 
Sbjct: 12  MDTKMEQRTSSSPNNKEMSINKYKLNLPEINLEDFKKHTHILVVSPRARTPSVTKS-SST 71

Query: 61  KANCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDLARKSTDI 104
           ++NCLCSPTTH+GSFRCRHHR  GMLRGGSVGSNL+DL RKS+ I
Sbjct: 72  RSNCLCSPTTHVGSFRCRHHRSLGMLRGGSVGSNLADLGRKSSSI 115

[Close]

BLAST of HG10022366 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 57 SAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSVGSNLSDL 97
          S + NCLCSPTTH GSFRCR+HR   + R GS+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

[Close]

BLAST of HG10022366 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-09
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 56  SSAKANCLCSPTTHIGSFRCRHHRHT---GMLRGGSVGSNLSDLA 98
           SS + NCLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 59  SSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of HG10022366 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.7e-06
Identity = 25/48 (52.08%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 56  SSAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSV-GSNLSDLARKSTD 103
           S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   K  D
Sbjct: 38  SMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

[Close]

BLAST of HG10022366 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 47.4 bits (111), Expect = 8.7e-06
Identity = 25/48 (52.08%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 56  SSAKANCLCSPTTHIGSFRCRHHRHTGMLRGGSV-GSNLSDLARKSTD 103
           S  K NCLCSPTTH GSFRCR HR   + R  S+  ++L D   K  D
Sbjct: 38  SMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPAD 85

[Close]

BLAST of HG10022366 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 29/70 (41.43%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 16 NNHNHHHKMPFTEFNLEELKQTSNL---LVSPSS---QSIVAPKAPSSAKANCLCSPTTH 75
          NNH+HHH+    + +     +  NL     SP S    S+V   +    K  CLCSPTTH
Sbjct: 23 NNHHHHHR----QRSPSPCNKNLNLRLKFYSPGSIPKPSVVTVSSNHQTKRKCLCSPTTH 82

Query: 76 IGSFRCRHHR 80
           GSFRC  HR
Sbjct: 83 PGSFRCSFHR 88

The following BLAST results are available for this feature:

BLAST of HG10022366 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44385.1	9.6e-39	71.79	hypothetical protein Csa_015645 [Cucumis sativus]	[more]
KAG7024984.1	1.8e-37	76.15	hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607735.1	3.2e-26	63.21	hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0048240.1	4.6e-25	74.71	putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D...	[more]
XP_010103953.1	7.9e-17	54.72	uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p...	[more]

BLAST of HG10022366 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W3	4.6e-39	71.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1	[more]
A0A5A7TYF3	2.2e-25	74.71	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
W9SBP1	3.8e-17	54.72	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1	[more]
A0A7J6EXD7	6.5e-17	55.91	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1	[more]
A0A7J6H8T3	1.1e-16	52.38	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1	[more]

BLAST of HG10022366 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55980.1	1.3e-09	65.00	serine-rich protein-related	[more]
AT3G13227.1	4.9e-09	66.67	serine-rich protein-related	[more]
AT1G67910.1	8.7e-06	52.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	8.7e-06	52.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20370.1	5.6e-05	41.43	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33132:SF48	BNACNNG68960D PROTEIN	coord: 27..100
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 27..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022366.1	HG10022366.1	mRNA