HG10021904 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021904
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cyclin-dependent protein kinase inhibitor SMR5-like
Location	Chr05: 18113680 .. 18113868 (+)
RNA-Seq Expression	HG10021904
Synteny	HG10021904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGATTCCGTACGCCGGAGCGATTGGAGTTTAGGATTCCACCGGCATCGGCACCGCCACCGCCACCGCCTAGGAAGAAGCCGGCTGCGGCGGCGAAGAAGCGTGAGGCGCCAGAGAATGGATATTTTCAACTGCCTGCCGACGATCTTGAACGATTCTTTTTCCGTCGTTCGGACATTCGGTAG

mRNA sequence

ATGGACGGATTCCGTACGCCGGAGCGATTGGAGTTTAGGATTCCACCGGCATCGGCACCGCCACCGCCACCGCCTAGGAAGAAGCCGGCTGCGGCGGCGAAGAAGCGTGAGGCGCCAGAGAATGGATATTTTCAACTGCCTGCCGACGATCTTGAACGATTCTTTTTCCGTCGTTCGGACATTCGGTAG

Coding sequence (CDS)

ATGGACGGATTCCGTACGCCGGAGCGATTGGAGTTTAGGATTCCACCGGCATCGGCACCGCCACCGCCACCGCCTAGGAAGAAGCCGGCTGCGGCGGCGAAGAAGCGTGAGGCGCCAGAGAATGGATATTTTCAACTGCCTGCCGACGATCTTGAACGATTCTTTTTCCGTCGTTCGGACATTCGGTAG

Protein sequence

MDGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFFFRRSDIR

Homology

[Close]

BLAST of HG10021904 vs. NCBI nr
Match: KAA0067757.1 (hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MDGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKK-REA-PE-NGYFQLPADDLERFF 56
          MDGFRTPER EFRIPPAS   PPPPRKKP    KK REA PE NGYFQLPADDLERFF
Sbjct: 1  MDGFRTPERPEFRIPPASL--PPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFF 56

[Close]

BLAST of HG10021904 vs. NCBI nr
Match: KAG7036940.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MDGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          M+G+RTPER EFRI PA   PPPPPRKK  AAAKKREAP NGYFQLP DDLE +F
Sbjct: 1  MEGYRTPERQEFRIQPAKV-PPPPPRKKAVAAAKKREAPANGYFQLP-DDLEVYF 53

[Close]

BLAST of HG10021904 vs. NCBI nr
Match: KAG6607256.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 3.7e-11
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MDGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          M+G+RTPER EFRI PA   PPPPPRKK  AAAKKREAP NGYFQLP DDLE +F
Sbjct: 1  MEGYRTPERQEFRIQPAKV-PPPPPRKKAVAAAKKREAPANGYFQLP-DDLEVYF 53

[Close]

BLAST of HG10021904 vs. NCBI nr
Match: KAF8022732.1 (hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          DG  TP R EFRIP ASA PPPPPRKKP    KKR  P+NGYFQ P DDLE  F
Sbjct: 20 DGCSTPTRGEFRIPAASA-PPPPPRKKPLCGGKKRGPPKNGYFQAP-DDLELLF 71

[Close]

BLAST of HG10021904 vs. NCBI nr
Match: MQM20984.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          +G+ TP+R+E RI PA  P PPPPRKKPAA AK+RE P+NGYFQ P  DLE  F
Sbjct: 13 EGWETPKRVECRI-PAVFPCPPPPRKKPAAFAKRREPPKNGYFQPP--DLEVLF 63

[Close]

BLAST of HG10021904 vs. ExPASy TrEMBL
Match: A0A5A7VKP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00780 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-12
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MDGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKK-REA-PE-NGYFQLPADDLERFF 56
          MDGFRTPER EFRIPPAS   PPPPRKKP    KK REA PE NGYFQLPADDLERFF
Sbjct: 1  MDGFRTPERPEFRIPPASL--PPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFF 56

[Close]

BLAST of HG10021904 vs. ExPASy TrEMBL
Match: A0A059D4M4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          DG  TP R EFRIP ASA PPPPPRKK + + KKR  P++GYFQ P DDLE  F
Sbjct: 20 DGCATPTRGEFRIPAASA-PPPPPRKKQSCSGKKRGPPKDGYFQAP-DDLELLF 71

[Close]

BLAST of HG10021904 vs. ExPASy TrEMBL
Match: A0A1R3J8M1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18555 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          DG  TP R E RIP   A PPPPP+KKP +  K+RE P+NGYFQ P  DLE  F
Sbjct: 27 DGLSTPTRGECRIPAEKACPPPPPKKKPFSFGKRREPPKNGYFQPP--DLELLF 78

[Close]

BLAST of HG10021904 vs. ExPASy TrEMBL
Match: W9RUH3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 34/54 (62.96%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFF 56
          DG  TP+R E RI   SA PPPPPRKKP  A KKR+ P+NGYF  P  DLE FF
Sbjct: 17 DGCATPKRDECRIREMSA-PPPPPRKKPFVAGKKRDRPKNGYFHPP--DLEAFF 67

[Close]

BLAST of HG10021904 vs. ExPASy TrEMBL
Match: A0A6A2ZY95 (ATP-dependent zinc metalloprotease FTSH 10 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110652pilonHSYRG00070 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKR-EAPENGYFQLPADDLERFF 56
          DG+ TP R EFRIP     PPPPP KKP    KKR E+P+NGYFQ P  DLE  F
Sbjct: 23 DGWSTPTRREFRIPAVKTCPPPPPPKKPFTFGKKRPESPKNGYFQPP--DLEMIF 75

[Close]

BLAST of HG10021904 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 7.2e-05
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 2  DGFRTPERLEFRIPPASAPPPPPPRKKPAAAAKKREAPENGYFQLPADDLERFFF 57
          +G  TP    +RIP AS  PPPP  +K     +KR+ P NGYFQ P  DLE  F+
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPP--RKKLMVVRKRDPPRNGYFQPP--DLETLFY 63

The following BLAST results are available for this feature:

BLAST of HG10021904 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067757.1	1.3e-11	81.03	hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa]	[more]
KAG7036940.1	3.7e-11	76.36	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAG6607256.1	3.7e-11	76.36	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAF8022732.1	4.2e-07	68.52	hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata]	[more]
MQM20984.1	6.1e-06	64.81	hypothetical protein [Colocasia esculenta]	[more]

BLAST of HG10021904 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021904 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKP1	6.1e-12	81.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A059D4M4	2.9e-06	64.81	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV...	[more]
A0A1R3J8M1	2.5e-05	59.26	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18555 PE=4 SV=1	[more]
W9RUH3	4.2e-05	62.96	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1	[more]
A0A6A2ZY95	5.5e-05	60.00	ATP-dependent zinc metalloprotease FTSH 10 OS=Hibiscus syriacus OX=106335 GN=F3Y...	[more]

BLAST of HG10021904 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	7.2e-05	47.27	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021904.1	HG10021904.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
cellular_component	GO:0005634	nucleus