HG10021795 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021795
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 16797032 .. 16797334 (-)
RNA-Seq ExpressionHG10021795
SyntenyHG10021795
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTATTTGATCCATTTATGGTTTGTTTAAATAGAATAAACTTTGATGTAATATTCCTAGATAGTAAAGCGGGCATCGGTGCAATTGTTCGTGACGCTAATGGTGACGTGTTGCTTGTTATGGAAAGTCATTTTGATTTGACTGGTTATGCTGAGCTTGCTGAGGTCATTGTCATGTTTCATGATCTTTTTGCATCCCTTGAGGCTTGTATTTCTCCGCTTTGGGTTGAATCTGACTCCAAAGTTGGAATCTCTTGGTTGAAAAATTTTGATACGCTAATGAGATTAGATGTTTGTTGA

mRNA sequence

ATGTTTCTATTTGATCCATTTATGGTTTGTTTAAATAGAATAAACTTTGATGTAATATTCCTAGATAGTAAAGCGGGCATCGGTGCAATTGTTCGTGACGCTAATGGTGACGTGTTGCTTGTTATGGAAAGTCATTTTGATTTGACTGGTTATGCTGAGCTTGCTGAGGTCATTGTCATGTTTCATGATCTTTTTGCATCCCTTGAGGCTTGTATTTCTCCGCTTTGGGTTGAATCTGACTCCAAAGTTGGAATCTCTTGGTTGAAAAATTTTGATACGCTAATGAGATTAGATGTTTGTTGA

Coding sequence (CDS)

ATGTTTCTATTTGATCCATTTATGGTTTGTTTAAATAGAATAAACTTTGATGTAATATTCCTAGATAGTAAAGCGGGCATCGGTGCAATTGTTCGTGACGCTAATGGTGACGTGTTGCTTGTTATGGAAAGTCATTTTGATTTGACTGGTTATGCTGAGCTTGCTGAGGTCATTGTCATGTTTCATGATCTTTTTGCATCCCTTGAGGCTTGTATTTCTCCGCTTTGGGTTGAATCTGACTCCAAAGTTGGAATCTCTTGGTTGAAAAATTTTGATACGCTAATGAGATTAGATGTTTGTTGA

Protein sequence

MFLFDPFMVCLNRINFDVIFLDSKAGIGAIVRDANGDVLLVMESHFDLTGYAELAEVIVMFHDLFASLEACISPLWVESDSKVGISWLKNFDTLMRLDVC
Homology
The following BLAST results are available for this feature:
BLAST of HG10021795 vs.
Match NameE-valueIdentityDescription
BLAST of HG10021795 vs.
Match NameE-valueIdentityDescription
BLAST of HG10021795 vs.
Match NameE-valueIdentityDescription
BLAST of HG10021795 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 15..92
e-value: 2.5E-8
score: 33.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021795.1HG10021795.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity