HG10021760 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021760
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Envelope-like protein
Location	Chr05: 16175134 .. 16176061 (+)
RNA-Seq Expression	HG10021760
Synteny	HG10021760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAAGAAGAAAAGAGTGATGAGAAGGAAGTCTCTGACAATGAAGAAGATGACAAGAAGAATAAGTCTGATGAAAGTGTGGAGATTGAATCTCTGTTTGAAGAGAGCGGCCTTGAGTCTCCTAAAGAAAAAGGCCCATCAAAAGGCAAGAAAAGTAAACTTTCCTAAGCGTCTATTCCCTATGTGCCTATGAATGGTATCTTCTTTCACTCTATAGATAATGCTAAAAAATGGAAGTTTGTTGTGAACAAGCCTATTATTGTTGAAAGGGATTTGTCTGAGCAGGCTCAAGATTGTATGAAAGTCATGGAGCTGCTGGTTTATGCTAATTTAGCTCGTACTGTGTTGAATCTCGATCCTTTCTATCCTTAGTTGGTTCATGAGTTTATTGTGAATTTGTCAGTAGTTTTGATAATGTTGCCAAGCCTAATTATCGAAGAGTTCATGTCAGAGGTCATTGCTTCATATTTACTGCTGCCATAATTAAAAGTACCTCAATTGTCAAGTGCCCGAAAATGTTGTTGAGCAACGCCCCTCCATGAATGACTTGGTGTTTGAGCCCACAGGTGTAAAGTTTGCGTAGCCCAAGTCTGGTTCGCTATCTATTGTAGATCTTAGCATCAAGTATGCCTTGCTACACATAATTGGAGTGGAGAATTGGTGCCCTTCCTCTCATAAATCAGGTCTCTCCACCACTTTAGCCAGTCTGCTCTACCAAATTGGGACTTACTCCAAGTTTAATTATGGCGTGTTTGAGCTGAATCAGATCAAAAGACATATTGGATCTCATGTAGTCAAGCTTTCGATTTGTTTCCCTCATCTTATTTGTGGGATATTGTTAACACAAAAGCCTGATATTCTGACCTCATGTGATACCCTTGGTCCTATCCTTACTCCTATTTCCTTCAATTACAAACTATTTTAG

mRNA sequence

ATGTCTAAAGAAGAAAAGAGTGATGAGAAGGAAGTCTCTGACAATGAAGAAGATGACAAGAAGAATAAGTCTGATGAAAGTGTGGAGATTGAATCTCTGTTTGAAGAGAGCGGCCTTGAGTCTCCTAAAGAAAAAGGCCCATCAAAAGGCAAGAAAAATCTTAGCATCAAGTATGCCTTGCTACACATAATTGGAGTGGAGAATTGGTGCCCTTCCTCTCATAAATCAGGTCTCTCCACCACTTTAGCCAGTCTGCTCTACCAAATTGGGACTTACTCCAAGTTTAATTATGGCGTGTTTGAGCTGAATCAGATCAAAAGACATATTGGATCTCATGTAGTCAAGCTTTCGATTTGTTTCCCTCATCTTATTTGTGGGATATTGTTAACACAAAAGCCTGATATTCTGACCTCATGTGATACCCTTGGTCCTATCCTTACTCCTATTTCCTTCAATTACAAACTATTTTAG

Coding sequence (CDS)

ATGTCTAAAGAAGAAAAGAGTGATGAGAAGGAAGTCTCTGACAATGAAGAAGATGACAAGAAGAATAAGTCTGATGAAAGTGTGGAGATTGAATCTCTGTTTGAAGAGAGCGGCCTTGAGTCTCCTAAAGAAAAAGGCCCATCAAAAGGCAAGAAAAATCTTAGCATCAAGTATGCCTTGCTACACATAATTGGAGTGGAGAATTGGTGCCCTTCCTCTCATAAATCAGGTCTCTCCACCACTTTAGCCAGTCTGCTCTACCAAATTGGGACTTACTCCAAGTTTAATTATGGCGTGTTTGAGCTGAATCAGATCAAAAGACATATTGGATCTCATGTAGTCAAGCTTTCGATTTGTTTCCCTCATCTTATTTGTGGGATATTGTTAACACAAAAGCCTGATATTCTGACCTCATGTGATACCCTTGGTCCTATCCTTACTCCTATTTCCTTCAATTACAAACTATTTTAG

Protein sequence

MSKEEKSDEKEVSDNEEDDKKNKSDESVEIESLFEESGLESPKEKGPSKGKKNLSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELNQIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF

Homology

[Close]

BLAST of HG10021760 vs. NCBI nr
Match: XP_038887175.1 (uncharacterized protein LOC120077362 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-29
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 55  SIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELNQIKRHIGSHVV 114
           S+KY LLH IG+ENW PSSHK GLSTTLASLLYQI T ++FNYGV   NQIKRHIGS   
Sbjct: 132 SVKYVLLHKIGIENWFPSSHKFGLSTTLASLLYQIDTGAEFNYGVLNFNQIKRHIGSQAT 191

Query: 115 KLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           K+  CF  LICGILL QKP++L + D   P+++ +SF+Y+L+
Sbjct: 192 KVLSCFHRLICGILLAQKPNLLLNSDVPRPLISTLSFSYRLY 233

[Close]

BLAST of HG10021760 vs. NCBI nr
Match: XP_038889203.1 (uncharacterized protein LOC120079088 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 63/115 (54.78%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 33  LFEESGLESPKEKGPSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQI 92
           +FE +G    +   P KG+ +   LS+KY LLH IG  NWCPS HKS LS  LASL+Y+I
Sbjct: 149 VFELTG--GARSTWPHKGQLSTTALSVKYVLLHRIGSYNWCPSLHKSSLSIALASLMYKI 208

Query: 93  GTYSKFNYGVFELNQIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGP 145
            T S+FNY VF +NQIK  IG   +K S CFP+LICGILL+QK D+LT  D + P
Sbjct: 209 RTRSQFNYSVFVINQIKCQIGFIALKFSSCFPYLICGILLSQKLDLLTISDVVVP 261

[Close]

BLAST of HG10021760 vs. NCBI nr
Match: RYA68246.1 (hypothetical protein DD598_25215, partial [Enterobacter cloacae complex sp. 2DZ2F16B1])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 226 PKKGKLSAGKLSVKYAILHRIGTANWVPTNHTSTVATGLGKFLYAVGTESKFNFGNYIFD 285

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  VKL I FP ++CGI+L+Q P+IL + D++    +P+S +YKLF
Sbjct: 286 QTIKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDSVKKRESPLSLHYKLF 338

[Close]

BLAST of HG10021760 vs. NCBI nr
Match: XP_028214087.1 (uncharacterized protein LOC114396358, partial [Glycine soja] >XP_028214088.1 uncharacterized protein LOC114396359, partial [Glycine soja])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 463 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 522

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  VKL I FP ++CGI+L+Q P+IL + D++    +P+S +YKLF
Sbjct: 523 QTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDSVMKRESPLSLHYKLF 575

[Close]

BLAST of HG10021760 vs. NCBI nr
Match: XP_028180963.1 (uncharacterized protein LOC114367908, partial [Glycine soja])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 455 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 514

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  VKL I FP ++CGI+L+Q P+IL + D++    +P+S +YKLF
Sbjct: 515 QTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDSVMKRESPLSLHYKLF 567

[Close]

BLAST of HG10021760 vs. ExPASy TrEMBL
Match: Q84VH5 (Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 469 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 528

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  VKL I FP ++CGI+L+Q P+IL   D++    +P+S +YKLF
Sbjct: 529 QTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNYTDSVMKRESPLSLHYKLF 581

[Close]

BLAST of HG10021760 vs. ExPASy TrEMBL
Match: Q84VI3 (Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 461 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 520

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  +KL I FP ++CGI+L+Q P++L   D++    +P+S +YKLF
Sbjct: 521 QTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVMKRESPLSLHYKLF 573

[Close]

BLAST of HG10021760 vs. ExPASy TrEMBL
Match: Q84VH9 (Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 447 PKKGKLSAGKLSVKYAILHRIGTANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 506

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  VKL I FP ++CGI+L+Q P+IL + D++    + +S +YKLF
Sbjct: 507 QTVKHSESFAVKLPIAFPTVLCGIMLSQHPNILNNIDSVKKRESALSLHYKLF 559

[Close]

BLAST of HG10021760 vs. ExPASy TrEMBL
Match: Q84VI1 (Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 463 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 522

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  +KL I FP ++CGI+L+Q P++L   D++    +P+S +YKLF
Sbjct: 523 QTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVMKRESPLSLHYKLF 575

[Close]

BLAST of HG10021760 vs. ExPASy TrEMBL
Match: Q84VH7 (Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 47  PSKGKKN---LSIKYALLHIIGVENWCPSSHKSGLSTTLASLLYQIGTYSKFNYGVFELN 106
           P KGK +   LS+KYA+LH IG  NW P++H S ++T L   LY +GT SKFN+G +  +
Sbjct: 461 PKKGKLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFD 520

Query: 107 QIKRHIGSHVVKLSICFPHLICGILLTQKPDILTSCDTLGPILTPISFNYKLF 157
           Q  +H  S  +KL I FP ++CGI+L+Q P++L   D++    +P+S +YKLF
Sbjct: 521 QTVKHSESFAIKLPIAFPTVLCGIMLSQHPNMLNYTDSVMKRESPLSLHYKLF 573

The following BLAST results are available for this feature:

BLAST of HG10021760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887175.1	4.4e-29	62.75	uncharacterized protein LOC120077362 [Benincasa hispida]	[more]
XP_038889203.1	1.1e-22	54.78	uncharacterized protein LOC120079088 [Benincasa hispida]	[more]
RYA68246.1	1.7e-20	46.90	hypothetical protein DD598_25215, partial [Enterobacter cloacae complex sp. 2DZ2...	[more]
XP_028214087.1	1.7e-20	46.90	uncharacterized protein LOC114396358, partial [Glycine soja] >XP_028214088.1 unc...	[more]
XP_028180963.1	1.7e-20	46.90	uncharacterized protein LOC114367908, partial [Glycine soja]	[more]

BLAST of HG10021760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q84VH5	1.8e-20	46.90	Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1	[more]
Q84VI3	5.3e-20	45.13	Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1	[more]
Q84VH9	5.3e-20	46.02	Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1	[more]
Q84VI1	5.3e-20	45.13	Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1	[more]
Q84VH7	5.3e-20	45.13	Envelope-like protein (Fragment) OS=Glycine max OX=3847 PE=4 SV=1	[more]

BLAST of HG10021760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021760.1	HG10021760.1	mRNA