HG10021720 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021720
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 14894465 .. 14894638 (+)
RNA-Seq ExpressionHG10021720
SyntenyHG10021720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

mRNA sequence

ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Protein sequence

MPQGPITRSRAKKLQQALSTHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF
Homology
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BLAST of HG10021720 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPQGPITRSRAKKLQQALSTHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF 58
           M QG I RSRAKKL QAL THIQAMVTS K+IVEDV VL YMLCKVE QDEDALNAF
Sbjct: 104 MSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDEDALNAF 159

The following BLAST results are available for this feature:
BLAST of HG10021720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900633.13.6e-1382.46uncharacterized protein LOC120087799 [Benincasa hispida][more]
BLAST of HG10021720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021720.1HG10021720.1mRNA