HG10021703 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021703
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 14416959 .. 14417267 (-)
RNA-Seq ExpressionHG10021703
SyntenyHG10021703
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTCAGAGTTGGTGGAGTGGCTGCTGTCAGAGGTCGCTGGAGTTGGCCATCAATAGTGGTGGTTGGATCTTGCTGGAGTTGGCTACCGGAGGTGGTCGCCGAAGTTGGCTATCAGAGGTGGTCGCCGGAGTTGATCGTCAACAGTGGTGGTTGGATGTTGTCGGAGTTGGCTGCAGGCAAGTGGTTGCGGAATTGGGTGGTCATCGGAATTGGGTGGTCATCGGAGTTGGTCGTTGGAGGTGGTCGTCGGAGTTGGCCGTCGCACGTGGTCGCCGAAGTTGGTCATCAGAGGTGTGTGAGCTGA

mRNA sequence

ATGGTCGTCAGAGTTGGTGGAGTGGCTGCTGTCAGAGGTCGCTGGAGTTGGCCATCAATAGTGGTGGTTGGATCTTGCTGGAGTTGGCTACCGGAGGTGGTCGCCGAAGTTGGCTATCAGAGGTGGTCGCCGGAGTTGATCGTCAACAGTGGTGGTTGGATGTTGTCGGAGTTGGCTGCAGGCAAGTGGTTGCGGAATTGGGTGGTCATCGGAATTGGGTGGTCATCGGAGTTGGTCGTTGGAGGTGGTCGTCGGAGTTGGCCGTCGCACGTGGTCGCCGAAGTTGGTCATCAGAGGTGTGTGAGCTGA

Coding sequence (CDS)

ATGGTCGTCAGAGTTGGTGGAGTGGCTGCTGTCAGAGGTCGCTGGAGTTGGCCATCAATAGTGGTGGTTGGATCTTGCTGGAGTTGGCTACCGGAGGTGGTCGCCGAAGTTGGCTATCAGAGGTGGTCGCCGGAGTTGATCGTCAACAGTGGTGGTTGGATGTTGTCGGAGTTGGCTGCAGGCAAGTGGTTGCGGAATTGGGTGGTCATCGGAATTGGGTGGTCATCGGAGTTGGTCGTTGGAGGTGGTCGTCGGAGTTGGCCGTCGCACGTGGTCGCCGAAGTTGGTCATCAGAGGTGTGTGAGCTGA

Protein sequence

MVVRVGGVAAVRGRWSWPSIVVVGSCWSWLPEVVAEVGYQRWSPELIVNSGGWMLSELAAGKWLRNWVVIGIGWSSELVVGGGRRSWPSHVVAEVGHQRCVS
Homology
[Close]
BLAST of HG10021703 vs. NCBI nr
Match: XP_010501877.1 (PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.1 PREDICTED: uncharacterized protein LOC104779200 [Camelina sativa])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 33  VVAEVGYQRWSPELIVNSG-GWMLSELAAGKWLRNW---VVIGIG---WSSELVVGGGRR 92
           VVA VG +RWSPEL+   G    L EL AG   R+W   VV G+G   WS  +V G GRR
Sbjct: 2   VVAGVGRRRWSPELVDGVGRRSCLPELVAGGGRRSWSPAVVAGVGRRSWSPAMVAGVGRR 61

Query: 93  SWPSHVVAEVGHQRC 101
            W   +VA  G +RC
Sbjct: 62  RWSPELVAGDGRRRC 76

The following BLAST results are available for this feature:
BLAST of HG10021703 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_010501877.17.6e-0648.00PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.... [more]
BLAST of HG10021703 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021703 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021703 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021703.1HG10021703.1mRNA