HG10021536 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021536
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr05: 10951773 .. 10954418 (-)
RNA-Seq Expression	HG10021536
Synteny	HG10021536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCATCTCTACCACGATTGTTGTCATCTGTGTTGCCTAAATTTACAAAAGAAGAAGAAAAAAAAAAAGAACAAAAATATTTTCGATGACGTTATCTTTGGCACGATGTCATGCCCACTACTACTTCATCGTCCTAGATCTGAGGGAAAAAAATAGACTTGGAGCCCTTTGTTTTTTAAGAATGTACCTAACCTAAATTTTTAGATGCTCGAAGTTCTATGTCTAAAATTACATTTGTCCAACATCATCAGATAACCATGTTTGTTTGATAAGAATGTTTTTCTAAAAATTTATAATGTTTGAACAACTGTATTTGTTTTGTAGGATTTCTACTAGAAAATGTCTTGAATTTACCTAATGTTTCAAAAATGCCCTTCATTAATTTATAATTAATTGAAAATAATTTGCACTTATATAACATGTTTTTTTATTAATTTGAATTTCTTTTTAAATTAATATTATTTATATTATTTTATATGTTATTTTTTCTCAATAAAATAATATACATCAATTTATAATTTTTTTTTATAAAAATAGACAATTTACATTTAAATTTGAAATCATTCTAAAAAATAAAATATATATAGTTGACAATATTTATCTTAATTATAAAATACAAATAAAGAAGAGTGATATATATAATATAAGAAACAAATAAAGGGTAAAAAAATTAAAAATGGGATACTCTCAACATGAAAATCCGAAAAATCTATGTTTCAAGCGGGTAACCAAGACTCTCAAGATGACCTCCATAAGGGCATCTTACTGTGAAAAAAACTACGATAATCTAAATGCCCACCCCATTAAAAAAACAAACAGACCCTTAGATCTTCATTTTTATGTTTGGGGCGTTGATTTGGGCCATACACTCCATTTACAATATCTGTTGACTTTACTTTTTTTACTCCATTTACAATATATTTGACTTTACTTTTTTTTGAAGAAAAAAAGAAAAAAGAAATATGTTTGAACGTAGTTTCATTTTGGTTGCTTTTGTTTTGTTATATACATAACAATTAACAACAATTAACTTTGACATTTTTTTTAATTGAAATTTGTGATATATGTAACAAACAGAATTTAGGAGAGAAACATAAATGAACCAAGATTATATCTAAATGAGAGGGATCCTGAAAACATAAAAGTATAGTTAAGAAAGACTTAAAAGAATTTAAAATTACCACATGCACTTCTCTTTTCGGTGGCTCAATCATAAGAACTCTAAAATTAAGCGTGCTTAGCTTGAAATAATTCTATAGGGTGACTTCCTGAAAGGACCTGTATTTGGTTTGTGGATACAACTTTTACTCTTAGAAACATTTAACACAAGCAAGGTTGATTGAAAGAACTTTCCTGGTGTGAGTTTTGGCTACTCGAAGTATCAATCTGATTTACAATGAGTTAAACCAAGATAGTATAATATTAAAAAATAATATTTAAAATACCATCAGACAAGATCATATCACAGAAACTACATATGGTAGTAAAGATGGAGTTTTAATCTTTTGTAAATTGAAAAGAAATGTTGAAAAGATCTGTTAAAACTCGTTGAATAACAATAGTTTTGGAAGAATTGATAGAAACTCCAGATATGAGTTTTCCCAGTAGCTTGAACAATACTGCCCCAGGTCCCAAAATTGCATACAAAATCAAATATAAATGAAACAGCAAACCTTTGTTTACAATGAAAATATTTATGGAAATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAGTTCAAATATCTACAAAGAGTATTTGCCTGCTTCCAATCATCCATTGATAGAGTTATCTTGGATTTAGCATTTGCAATAGCAATAGCAATAGCAGCTCCAAATCTAAGATTATCCTCAACAATGGTATAATTCAAAAGGTATTGATCGATTCCCAATCAAACAAACAAGGCATCAGAGTTTGACACTGAGATTTTCCAATTGATATCAATGAAATGTGTTCTCTTAACAAAACCAAAAGATATAGCCATCAATGACAAACTTATGAGACTCGGAAGGAATTTCACTCCGAATATTCAACAATTTTGATGTTTCTTTTTCCTCGAGGAGGTATATGGATTCACATTCTTTCTCAATCCTCAGGATATATGACCTTCAACTTGAATCATGTTTGAAGATTTGTTCTAAGGAATTTTTTAAAACCGTGAATGCTTCATCATCTTCGCAAACTCATTAATTTCAATTTCCCCGATGCAATTCCCAACCAATCGATTTCCCCTTCTTCTACGCCGATTTCAAGGATCTAGGGTTTCAAAATTGGAGAGATGAGAGACAGAAAGAGAGCGAAAACTTAGCTTGCTCGCACTGCGATCTCTTCAGAGTGGTTCCGCCGCTGGAGCAGAGGGTTCGTACCGCCTCCGCCTCGCTAGGGCAAGCCGTCGCCACCAGACACTGTGCAAGAGATCGGTTCAGGTGTCGGCAGGCCGACCGCCGCGCCGGACCTTCTGGAAGTCGCTTGTGGCACTCTCGGAGAGCCTGCTCCAGCCGCTCGCAGCCGCCGTCACCACATATAGGAGATTCGCCGGTTGGTGACATCTCTTTCTTTGCTTTGTGGCAATGGGGTCCCACACCATTTGGGACGGAAGAGAAGGTTTCTGTTTCTGTATATTTGCTTTCAGAAAACAAATGA

mRNA sequence

ATGCCATCATCTCTACCACGATTGTTGTCATCTGTAGTGGTTCCGCCGCTGGAGCAGAGGGTTCGTACCGCCTCCGCCTCGCTAGGGCAAGCCGTCGCCACCAGACACTGTGCAAGAGATCGGTTCAGGTGTCGGCAGGCCGACCGCCGCGCCGGACCTTCTGGAAGTCGCTTGTGGCACTCTCGGAGAGCCTGCTCCAGCCGCTCGCAGCCGCCGTCACCACATATAGGAGATTCGCCGGTTGGTGACATCTCTTTCTTTGCTTTGTGGCAATGGGGTCCCACACCATTTGGGACGGAAGAGAAGGTTTCTGTTTCTGTATATTTGCTTTCAGAAAACAAATGA

Coding sequence (CDS)

ATGCCATCATCTCTACCACGATTGTTGTCATCTGTAGTGGTTCCGCCGCTGGAGCAGAGGGTTCGTACCGCCTCCGCCTCGCTAGGGCAAGCCGTCGCCACCAGACACTGTGCAAGAGATCGGTTCAGGTGTCGGCAGGCCGACCGCCGCGCCGGACCTTCTGGAAGTCGCTTGTGGCACTCTCGGAGAGCCTGCTCCAGCCGCTCGCAGCCGCCGTCACCACATATAGGAGATTCGCCGGTTGGTGACATCTCTTTCTTTGCTTTGTGGCAATGGGGTCCCACACCATTTGGGACGGAAGAGAAGGTTTCTGTTTCTGTATATTTGCTTTCAGAAAACAAATGA

Protein sequence

MPSSLPRLLSSVVVPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHSRRACSSRSQPPSPHIGDSPVGDISFFALWQWGPTPFGTEEKVSVSVYLLSENK

Homology

[Close]

BLAST of HG10021536 vs. NCBI nr
Match: GER41007.1 (pentatricopeptide repeat-containing protein [Striga asiatica])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 33/48 (68.75%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 14  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS 62
           VPPLEQRVRTAS S GQA ATRH ARDR R R A  R  P+G R W S
Sbjct: 673 VPPLEQRVRTASDSSGQAAATRHSARDRLRWRHAASRDRPAGIRRWQS 720

[Close]

BLAST of HG10021536 vs. ExPASy TrEMBL
Match: A0A5A7Q9B3 (Pentatricopeptide repeat-containing protein OS=Striga asiatica OX=4170 GN=STAS_17721 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 33/48 (68.75%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 14  VPPLEQRVRTASASLGQAVATRHCARDRFRCRQADRRAGPSGSRLWHS 62
           VPPLEQRVRTAS S GQA ATRH ARDR R R A  R  P+G R W S
Sbjct: 673 VPPLEQRVRTASDSSGQAAATRHSARDRLRWRHAASRDRPAGIRRWQS 720

The following BLAST results are available for this feature:

BLAST of HG10021536 vs. NCBI nr


Match Name	E-value	Identity	Description
GER41007.1	1.1e-05	68.75	pentatricopeptide repeat-containing protein [Striga asiatica]	[more]

BLAST of HG10021536 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7Q9B3	5.4e-06	68.75	Pentatricopeptide repeat-containing protein OS=Striga asiatica OX=4170 GN=STAS_1...	[more]

BLAST of HG10021536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021536.1	HG10021536.1	mRNA