HG10021519 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021519
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H2 subunit C isoform X2
LocationChr05: 10553036 .. 10555973 (+)
RNA-Seq ExpressionHG10021519
SyntenyHG10021519
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCTGTTTCTTCTACTCCACTTTATATATTTGGGTAATTTGTTTGTAGTTTACTGAGTAGTCTCTTTTTCATTTTCTTTTCTTGCCCATTGAAGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGTAAATTGAAAATACTTTCAGTTTTGAGTTCATTGAATTGGATCTTGTTTGTTGATATTTCCCACTTGTATTGTTCACTACTTCAATATGTTAATCACCTATCTAATATGCTTACATAAATAATTGGTTTCAGTTATCTATATTCTTCGGCGTGATATTACTTTATAACATTAAAAGGAGTTTTCTACCTTAATTTCTTATAAAATGGAAAGAATAAGAAACAACGATGTCATTGTTAATTGAGTAAACTCATTAACTTGAAATCTCCATATTAGTTGACTTTCTATCTTTTAGAGAAATGTTTTGGGCTAGCTATGAACATTTCTATGATTGAAAAGTGTTATTTTTGCGAGCATTGGTTTTTCTAGCTTTGTTGGATGTTTTGGTTGGTTGTGAATATTTTGATCTTAAAATGGAATGTTTCTGCTCCCTATGTGGATCAATGATTACCTATTCACAGGGTCTTGTCTTGTCTTAAGCAAAGACTTTTTCAACAAAACAATAGAGCTCATCAAAAGCCATATATTGAACACAGAAGGCTTTATAACACTTGACAGTATAGTTATTAAAATGAAGTTTATTCCAATTCCAAGCATACTAGAACTGACTTCCTTAAAGTTGTGTATGTTTTCTTTTACCTGTTTTAATTCATGTAGTTGATGTTTAAAATGAAAGTAGTTTCAAGACCCACTTCAATAGGCTATGGTAATTATAAGAATTCAAATAAACAAAGATCGAAAACTATGATACCGGTAGTTATTGTTCTATGTCTTAGCTGTAACTGTTACTCATGTGGGTTGAATGGAATTCACGGACACAATTGGTGAAGAGCTTTCCTATAATTCTTAGGGTATTTTCTGATTGATGTTCTTATTTCACTTTTAATATGCCTGGATATATTTTGAAGGAATTTCAACATGCATTCTGTTTATGTTTTGTGAAGAAAAAGATGCTAGGATGGTACACTGGTTGATGATAAACAGGGTATTTCAACTGGAACAAGTTTATGAATCTATTATAACGAATCTGTATTTGTTTTCTTATTCTAAAGTGGAATTTAGTTGTCAACTTGATTCTCTTTTCACGGTCAACTTTGAGATCTATTTAATTTTTTGGGACCAATTGAGTTTTATTTATTATTATTATTACTTTTTAAATTTGTTTTGCTGCCCCATGTCCTAGTTCTGCTTCTTATGGGATTGTTAACGGTGTAGGCCTAGTTATTTCATGAGTACATGCGCAATAAGACTTTCCTGAGTCTCTTTTTCCATAGCTCCTTCCGCTGTTTTGTTTTTGTTTTTTGTTTTGTTTTGTTTTTTGTTTTACTAATGGTTGCTTTCAGAAACTTCAGTTGGGCAAGTTTTCGCAATAATCTCTTTAACTAAAGATTAACAGAGACATGGGCAAGTTTCCCTGTTCCAATTCCTTGGTTTGCATTCATGAATATTTTGAAGCAGAGATAAAAATGAAAAGAGATAACTTGAACCTTCTCATGTAGTATGAATATGATATATTTATTTTCTTTTTGGGAGATTTGGTATGAAAGAACCATCGGTTATTTGATGATTGTAGAAAAAGGAAATGAGAAGGAACGAGCTATTCATTTTCATGTTTCTTATAGTTATGAGGCTGGTATATAAGAACAGTTTTGTGACTATCCCTTTTTGCTTTTGTAATTCTAGCCAATTGGAAAGTATATATATTAAGGCCCTTTGTTTGAATGGATATGAGGATATCTAATCTCCTATCCTTTTTGAGTTAATGTAAATGCTTTCTGTTAAACAAAAAACATGCTGAGTTTCCACCGTTTCTACCTAATTTGAACATCTGCACTAAGGCAACCAGAGCTAATATTGATATAAATTTCTTCCACAGTTCACTTAACCAATTTGAACTAAAGGATCTATGTCTATCTGTAAATGTTGTTCTTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCAGTATGATTCTGATCGACACACATTAAAATGATTAGCAATTTCATGTCTTGTTTGCATTTTTCTGAATCAAAGTACTAAAACTGCTATGAGGTTTGAGAATAGTTTCATACAAGCTTTAAACTTACAAATAAGAAATGGAAAAAAAGTTATCGTTTCTTATCAAATATATTAGGTTTGTCATGTAACTCAAAGTTTGTGCATGATTCTCACCAATATTGGTCAAATATGACAAAAAAAAAAGGATTTATGTTATTTATAACGTTTTTTGTGACTGCTCTTTGAATAATTTACCATTCTTGTATAACTTCTGTCTTCTCTATTCATATATTGTACTTCAGAATTACATTTATTTCCTCAAGTTTCTTAGCTCCTGAAATTTTGTTTATGATTGCAGTTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

Coding sequence (CDS)

ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

Protein sequence

MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS
Homology
[Close]
BLAST of HG10021519 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           MNAE ERKGEVIVDFDF  DSV LDLSGKVHQLPCAIKFDGPCSVSQYFKPKST      
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEFDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYVLGKKSLGKR+ SEQ Q+SSPWQVKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLPSQDDTFQRSFHWLTVA+ALHKPVTAEDLASASTALKNMS
Sbjct: 121 WNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

[Close]
BLAST of HG10021519 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-55
Identity = 115/166 (69.28%), Postives = 125/166 (75.30%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYV+G+KSL KR+ SE+ QDSS WQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]
BLAST of HG10021519 vs. NCBI nr
Match: KAG7019419.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 114/164 (69.51%), Postives = 125/164 (76.22%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGVDGLS 60

Query: 61  -----------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWN 120
                                  GYV+G+KS GKR+ SE+ QDSS WQVKAKFENITYWN
Sbjct: 61  VENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITYWN 120

Query: 121 HDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           HDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Sbjct: 121 HDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 164

[Close]
BLAST of HG10021519 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 224.2 bits (570), Expect = 6.9e-55
Identity = 114/166 (68.67%), Postives = 125/166 (75.30%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYV+G+KS GKR+ SE+ QDSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of HG10021519 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.2 bits (570), Expect = 6.9e-55
Identity = 114/166 (68.67%), Postives = 125/166 (75.30%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYV+G+KS GKR+ SE+ QDSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of HG10021519 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 115/166 (69.28%), Postives = 125/166 (75.30%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYV+G+KSL KR+ SE+ QDSS WQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA ASTALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]
BLAST of HG10021519 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 114/166 (68.67%), Postives = 125/166 (75.30%), Query Frame = 0 

Query: 1   MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60
           M++E ERK EVIVDFDFG DS  +DLSGKVHQLPCA+KFDGPCSVSQYFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  -------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITY 120
                                    GYV+G+KS GKR+ SE+ QDSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           WNHDTLP+QDDTFQRSFHWLTVA+ALHKPVTAEDLA+AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of HG10021519 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 111/168 (66.07%), Postives = 119/168 (70.83%), Query Frame = 0 

Query: 1   MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST---- 60
           MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKST    
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  ---------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
                                      GYVLGKKSLGK + S+QC DSSPWQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of HG10021519 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.1e-53
Identity = 111/168 (66.07%), Postives = 119/168 (70.83%), Query Frame = 0 

Query: 1   MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST---- 60
           MNA+  RKGE  V  DFDFG D   LDLSGK+HQLPC IKFDGPC VS YFKPKST    
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  ---------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
                                      GYVLGKKSLGK + S+QC DSSPWQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of HG10021519 vs. ExPASy TrEMBL
Match: A0A0A0M1A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.7e-52
Identity = 113/168 (67.26%), Postives = 120/168 (71.43%), Query Frame = 0 

Query: 1   MNAEIERKGEVIV--DFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKST---- 60
           MN + ERKGEVIV  DFDFG D   LD+SGKVHQLPC IKFDGPC VS YFKPKST    
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  ---------------------------GYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
                                      GYVLGKKS    + SEQC DSSPWQVKAKF+NI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 136
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASASTALKN+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

[Close]
BLAST of HG10021519 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 3.3e-31
Identity = 72/157 (45.86%), Postives = 90/157 (57.32%), Query Frame = 0 

Query: 13  VDFDFGIDSVPL-DLSGKVHQLPCAIKFDGPCSVSQYFKPKS------------------ 72
           +DF    D   + DLS +VHQLPC I+FDGP  VS YFKPKS                  
Sbjct: 4   IDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGR 63

Query: 73  -------------TGYVLGKKS----LGKREDSEQCQDSSPWQVKAKFENITYWNHDTLP 132
                        +G+VL + S     GKR+ S   +D+  W+VKAKF N+TYWNHD+LP
Sbjct: 64  KLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLP 123

Query: 133 SQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKN 134
           S+DDTF RSFHW ++A+ALHKPV  EDL + S   KN
Sbjct: 124 SKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKN 160

The following BLAST results are available for this feature:
BLAST of HG10021519 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893586.11.2e-5975.30uncharacterized protein C12B10.15c [Benincasa hispida][more]
XP_023001622.12.4e-5569.28uncharacterized protein C12B10.15c [Cucurbita maxima][more]
KAG7019419.14.1e-5569.51Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022927160.16.9e-5568.67uncharacterized protein C12B10.15c [Cucurbita moschata][more]
KAG6583796.16.9e-5568.67Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of HG10021519 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021519 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KH291.1e-5569.28uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P... [more]
A0A6J1EN413.3e-5568.67uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094... [more]
A0A5A7TIT83.1e-5366.07Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3C9A83.1e-5366.07uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ... [more]
A0A0A0M1A22.7e-5267.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1[more]
BLAST of HG10021519 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39440.13.3e-3145.86CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013924Ribonuclease H2, subunit CPFAMPF08615RNase_H2_suCcoord: 64..115
e-value: 2.4E-9
score: 37.5
IPR013924Ribonuclease H2, subunit CCDDcd09271RNase_H2-Ccoord: 31..93
e-value: 9.79038E-15
score: 63.1587
NoneNo IPR availableGENE3D2.40.128.680coord: 52..122
e-value: 4.5E-14
score: 54.0
NoneNo IPR availablePANTHERPTHR47204OS02G0168900 PROTEINcoord: 21..54
coord: 54..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021519.1HG10021519.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006401 RNA catabolic process
cellular_component GO:0032299 ribonuclease H2 complex