HG10021472 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021472
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 9685618 .. 9686109 (+)
RNA-Seq ExpressionHG10021472
SyntenyHG10021472
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCATACTGCAAAAAGTCTCATCTTTTATACATCTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTACTCCTCATCTTCACCTTCCATATCCCCACATGTCGTTTCTTCTCTTACCACCATTTTCCAAGGCCTTCTCTGTACTATAACAATTGTGCTCGCCATCCTAAGGTACTCTGTAATCAGATTGCAATATCCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGACGGCAAGTTGGTTGAGTCAGAAGGACTCAGCCAGAGTCGCTGCTGGGAAGTGGGGGTCTCAGGGCTGCCGTGTTCCGACCATTTCAGAACACAAGGCAGAGGCTGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTACTATTCAATATGGCTCAACGGCAGGCTCTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

mRNA sequence

ATGATTCCCATACTGCAAAAAGTCTCATCTTTTATACATCTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTACTCCTCATCTTCACCTTCCATATCCCCACATGTCGTTTCTTCTCTTACCACCATTTTCCAAGGCCTTCTCTGTACTATAACAATTGTGCTCGCCATCCTAAGGTACTCTGTAATCAGATTGCAATATCCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGACGGCAAGTTGGTTGAGTCAGAAGGACTCAGCCAGAGTCGCTGCTGGGAAGTGGGGGTCTCAGGGCTGCCGTGTTCCGACCATTTCAGAACACAAGGCAGAGGCTGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTACTATTCAATATGGCTCAACGGCAGGCTCTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Coding sequence (CDS)

ATGATTCCCATACTGCAAAAAGTCTCATCTTTTATACATCTTCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTACTCCTCATCTTCACCTTCCATATCCCCACATGTCGTTTCTTCTCTTACCACCATTTTCCAAGGCCTTCTCTGTACTATAACAATTGTGCTCGCCATCCTAAGGTACTCTGTAATCAGATTGCAATATCCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTTTACGAGCAGCGCCAATCGCCTTACTCGTGACGGCAAGTTGGTTGAGTCAGAAGGACTCAGCCAGAGTCGCTGCTGGGAAGTGGGGGTCTCAGGGCTGCCGTGTTCCGACCATTTCAGAACACAAGGCAGAGGCTGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTACTATTCAATATGGCTCAACGGCAGGCTCTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MIPILQKVSSFIHLLTSDPSPFPSLLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTISEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
Homology
BLAST of HG10021472 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.5e-67
Identity = 135/164 (82.32%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARH 60
           MIPI+QKVSSF H LTSDPSPFPS LLLLLIFTFHI  CRFFSYHHFP   L+Y NC  +
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  PKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTI 120
            K+LCN I ISSPRRLP GGWALRAAPIALLV  SWLSQK+SA VAA KW SQG RV TI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKAE EEIGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of HG10021472 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 7.3e-67
Identity = 132/164 (80.49%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARH 60
           MIP++QKV SF + LTSDPSPFPSLLL LLIFTFHIP CRFFSYHHFP   L+Y NC  +
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  PKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTI 120
            K+LCN I  SSPRRLP GGWALRAAPIALLV  SWLSQK+SA VAA KWGSQGC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKAE EEIGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of HG10021472 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-56
Identity = 118/164 (71.95%), Postives = 131/164 (79.88%), Query Frame = 0

Query: 1   MIPILQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARH 60
           MIPI+ K+SS  H LTSDPSPFPS LLLLLIFT HIPTCRFFSY     PSLYY +CA  
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYY-HCAGR 60

Query: 61  PKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTI 120
              LCN +A+SSP+RLPCGGW+LR APIALLV  SWL++KD+  VAA  WGS+ C VPTI
Sbjct: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120

Query: 121 ---SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 161
               +H+ EAE IGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Sbjct: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

BLAST of HG10021472 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.5e-67
Identity = 132/164 (80.49%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MIPILQKVSSFIHLLTSDPSPFPSLLL-LLIFTFHIPTCRFFSYHHFPRPSLYYNNCARH 60
           MIP++QKV SF + LTSDPSPFPSLLL LLIFTFHIP CRFFSYHHFP   L+Y NC  +
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  PKVLCNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTI 120
            K+LCN I  SSPRRLP GGWALRAAPIALLV  SWLSQK+SA VAA KWGSQGC V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           SEHKAE EEIGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

BLAST of HG10021472 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 131/160 (81.88%), Postives = 137/160 (85.62%), Query Frame = 0

Query: 5   LQKVSSFIHLLTSDPSPFPS-LLLLLIFTFHIPTCRFFSYHHFPRPSLYYNNCARHPKVL 64
           +QKVSSF H LTSDPSPFPS LLLLLIFTFHI  CRFFSYHHFP   L+Y NC  + K+L
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNQIAISSPRRLPCGGWALRAAPIALLVTASWLSQKDSARVAAGKWGSQGCRVPTISEHK 124
           CN I ISSPRRLP GGWALRAAPIALLV  SWLSQK+SA VAA KW SQG RV TISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEAEEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 164
           AE EEIGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653331.12.5e-6782.32hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.17.3e-6780.49hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAG6573437.14.4e-5671.95hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TJ523.5e-6780.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW231.5e-6581.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021472.1HG10021472.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane