HG10021408 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021408
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
LocationChr05: 8757248 .. 8758080 (+)
RNA-Seq ExpressionHG10021408
SyntenyHG10021408
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGCGCAGTAGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTCGCATATCTCCAGTGCAAACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAAGCGAATAACATTTTGTTATTTTCTTAGCCAAAGTATGGATTCACATTTCTTCGGAAAATTGCTTTAGTTACCATATGATTCTGATCTGCTAGCAAATAGGAGGTTAGGAAATATATTGCTTTAGTAATCATATGATCGTCTTCTAGCAAATAGGGGGTTAGGAAATACATTGCTTTAGTAATCATATGGTTGTCTTCTGGTCCGCTAGGAAACAGAGGACCAGGAAACTGGAAAGAAGATAAGTGGTATTTCTTAGGTTTGACATAAGATAATTAGTACAGGTGCTGACTGCTGATAAAATCCTAGGTTGATGATCATATATCTGACTAAATGATAGTGTCCTTGGTCGTATGGGTTCACCAATATCTCAGCCCCATTAGCTCAGGTTCACGGTGGAAATAACGGACTGTGGAGGTCTTCCACATTCAGAAGACACGGTGGAGTTAATGGATTTGGCAGTGGAGTTGGGCTGTAAAGTGGATCATCTTCCCATAAATTACCTTGGTTTTTCCCTTGATGGTAATCATCACTCCCTTGCCTCTTGGGAACCGTTAGTTGACAAGTTCAAAGCAAAGATTGCCGAGTGGAAAAGCTCCTTGCTTTCAAGGGGGACGCCTAACCTTGTTACATTTTGTGCTTAA

mRNA sequence

ATGGCGAGCGCAGTAGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTCGCATATCTCCAGTGCAAACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTTCACGGTGGAAATAACGGACTGTGGAGGTCTTCCACATTCAGAAGACACGGTGGAGTTAATGGATTTGGCAGTGGAGTTGGGCTGTAAAGTGGATCATCTTCCCATAAATTACCTTGGTTTTTCCCTTGATGGTAATCATCACTCCCTTGCCTCTTGGGAACCGTTAGTTGACAAGTTCAAAGCAAAGATTGCCGAGTGGAAAAGCTCCTTGCTTTCAAGGGGGACGCCTAACCTTGTTACATTTTGTGCTTAA

Coding sequence (CDS)

ATGGCGAGCGCAGTAGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACAAGTGTCGATCGGAGAATGTCGCATATCTCCAGTGCAAACGGAAGGATCCGAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTTCACGGTGGAAATAACGGACTGTGGAGGTCTTCCACATTCAGAAGACACGGTGGAGTTAATGGATTTGGCAGTGGAGTTGGGCTGTAAAGTGGATCATCTTCCCATAAATTACCTTGGTTTTTCCCTTGATGGTAATCATCACTCCCTTGCCTCTTGGGAACCGTTAGTTGACAAGTTCAAAGCAAAGATTGCCGAGTGGAAAAGCTCCTTGCTTTCAAGGGGGACGCCTAACCTTGTTACATTTTGTGCTTAA

Protein sequence

MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCVLSLFTVEITDCGGLPHSEDTVELMDLAVELGCKVDHLPINYLGFSLDGNHHSLASWEPLVDKFKAKIAEWKSSLLSRGTPNLVTFCA
Homology
BLAST of HG10021408 vs. NCBI nr
Match: XP_004135555.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_023175 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. NCBI nr
Match: XP_038906805.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-25
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAN+CR ENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANRCRLENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. NCBI nr
Match: XP_038893587.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-25
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAV+AAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCK+KDPNPEKCL+KGHQVTRCV
Sbjct: 1  MASAVNAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKQKDPNPEKCLEKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. NCBI nr
Match: KAA0054071.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis melo var. makuwa] >TYJ96852.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAN CRSENVAYLQCKRKDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-19
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI  +C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

BLAST of HG10021408 vs. ExPASy Swiss-Prot
Match: Q9SQT4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-17
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI  +C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

BLAST of HG10021408 vs. ExPASy TrEMBL
Match: A0A5A7UKJ4 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00070 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. ExPASy TrEMBL
Match: A0A0A0LY30 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. ExPASy TrEMBL
Match: A0A1S3BBD5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo OX=3656 GN=LOC103488226 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCK+KDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. ExPASy TrEMBL
Match: A0A6J1KXR2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111499155 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.1e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAN CRSENVAYLQCKRKDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. ExPASy TrEMBL
Match: A0A6J1H2X4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111459990 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.1e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAN CRSENVAYLQCKRKDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

BLAST of HG10021408 vs. TAIR 10
Match: AT5G18800.1 (Cox19-like CHCH family protein )

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI  +C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

BLAST of HG10021408 vs. TAIR 10
Match: AT5G18800.2 (Cox19-like CHCH family protein )

HSP 1 Score: 97.4 bits (241), Expect = 9.9e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI  +C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

BLAST of HG10021408 vs. TAIR 10
Match: AT3G06310.2 (Cox19-like CHCH family protein )

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-19
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI  +C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 LF 65
          L+
Sbjct: 65 LY 66

BLAST of HG10021408 vs. TAIR 10
Match: AT3G06310.1 (Cox19-like CHCH family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI  +C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

BLAST of HG10021408 vs. TAIR 10
Match: AT3G06310.3 (Cox19-like CHCH family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 3  SAVDAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKRKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI  +C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004135555.18.1e-2596.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus]... [more]
XP_038906805.18.1e-2595.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Benincasa hispid... [more]
XP_038893587.18.1e-2595.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa h... [more]
KAA0054071.18.1e-2596.83NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis mel... [more]
XP_022958837.11.1e-2496.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m... [more]
Match NameE-valueIdentityDescription
Q8LGE71.4e-1971.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th... [more]
Q9SQT42.9e-1765.57NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th... [more]
Match NameE-valueIdentityDescription
A0A5A7UKJ43.9e-2596.83NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis m... [more]
A0A0A0LY303.9e-2596.83CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=3 S... [more]
A0A1S3BBD53.9e-2596.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo O... [more]
A0A6J1KXR25.1e-2596.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita... [more]
A0A6J1H2X45.1e-2596.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita... [more]
Match NameE-valueIdentityDescription
AT5G18800.19.9e-2171.43Cox19-like CHCH family protein [more]
AT5G18800.29.9e-2171.43Cox19-like CHCH family protein [more]
AT3G06310.27.1e-1964.52Cox19-like CHCH family protein [more]
AT3G06310.12.1e-1865.57Cox19-like CHCH family protein [more]
AT3G06310.32.1e-1865.57Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13344:SF2CHCH-RELATEDcoord: 1..65
IPR016680NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8PANTHERPTHR13344NADH-UBIQUINONE OXIDOREDUCTASEcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021408.1HG10021408.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
cellular_component GO:0005747 mitochondrial respiratory chain complex I