HG10021128 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021128
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	(3S,6E)-nerolidol synthase 1-like
Location	Chr05: 5627745 .. 5628008 (-)
RNA-Seq Expression	HG10021128
Synteny	HG10021128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAGCATCTGCCATGCTGATAGTTAGAGTCATTCCACCACCACCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCGTCTTCTTTCCAACCATATCCAAAAGCTTCCTTGCATAACAATCCACCAATTAACCACAATGTGCCTATTAATATTCCTCAGCCTCTCAAATGGTCCATTCCTCTAAATTACTCCTTCCTTCCAACTTCACTTCCTGCAGATTCTGAATTTTCCCCTTTAAATGTATGCCTCTATCATCTCTAG

mRNA sequence

ATGGCTACAGCATCTGCCATGCTGATAGTTAGAGTCATTCCACCACCACCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCGTCTTCTTTCCAACCATATCCAAAAGCTTCCTTGCATAACAATCCACCAATTAACCACAATGTGCCTATTAATATTCCTCAGCCTCTCAAATGGTCCATTCCTCTAAATTACTCCTTCCTTCCAACTTCACTTCCTGCAGATTCTGAATTTTCCCCTTTAAATGTATGCCTCTATCATCTCTAG

Coding sequence (CDS)

ATGGCTACAGCATCTGCCATGCTGATAGTTAGAGTCATTCCACCACCACCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCGTCTTCTTTCCAACCATATCCAAAAGCTTCCTTGCATAACAATCCACCAATTAACCACAATGTGCCTATTAATATTCCTCAGCCTCTCAAATGGTCCATTCCTCTAAATTACTCCTTCCTTCCAACTTCACTTCCTGCAGATTCTGAATTTTCCCCTTTAAATGTATGCCTCTATCATCTCTAG

Protein sequence

MATASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHNNPPINHNVPINIPQPLKWSIPLNYSFLPTSLPADSEFSPLNVCLYHL

Homology

[Close]

BLAST of HG10021128 vs. NCBI nr
Match: XP_011648431.2 ((3S,6E)-nerolidol synthase 1 [Cucumis sativus] >KAE8652684.1 hypothetical protein Csa_013083 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MATASAMLIVRVIPPP--PSSSSSPSSSSSSFQPYPKASLHN-NPPINHNVPINIPQPLK 60
          MATASAMLIVRVIPP    SSS S SSSSSSFQ YPKAS+ N  PP N N PINIP   K
Sbjct: 1  MATASAMLIVRVIPPAHFSSSSFSSSSSSSSFQAYPKASMDNQTPPTNFNAPINIPHSQK 60

Query: 61 WSIPLNYSFLPTSLPADSEFSPLN 82
          W+IPLNYSFLPTSLPAD + SPLN
Sbjct: 61 WTIPLNYSFLPTSLPADPQISPLN 84

[Close]

BLAST of HG10021128 vs. NCBI nr
Match: XP_038893851.1 (LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1-like [Benincasa hispida])

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MATASAMLIVRVIPPPPSSSSSPSSSSSSFQPY--PKASLHNNPPINHNVPINIPQPLKW 60
          MATASA+LIVRV+PP         SSSSS QPY   KAS+ N PPIN+NVPINIP P KW
Sbjct: 1  MATASAVLIVRVVPP-------YLSSSSSIQPYLKLKASMQNIPPINNNVPINIPHPQKW 60

Query: 61 SIPLNYSFLPTSLPADSEFSPLN 82
          +IPLNYSFLPTSLPADS+FSPLN
Sbjct: 61 TIPLNYSFLPTSLPADSQFSPLN 76

[Close]

BLAST of HG10021128 vs. NCBI nr
Match: XP_016898901.1 (PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MATASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHN-NPPINHNVPINIPQPLKWS 60
          MA ASAML+ RVIPP  SSSS   SSSSSFQPYPKAS+ N  PPIN +VPINIP   KW+
Sbjct: 1  MAAASAMLMGRVIPPRFSSSS--FSSSSSFQPYPKASMDNETPPINFSVPINIPHSQKWT 60

Query: 61 IPLNYSFLPTSLPADSEFSPLN 82
          IPLNYSFLPTSLPAD + SP N
Sbjct: 61 IPLNYSFLPTSLPADPQISPFN 80

[Close]

BLAST of HG10021128 vs. NCBI nr
Match: XP_022927129.1 (uncharacterized protein LOC111434068 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 2   ATASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHNNPPINHNVPINIPQPLKWSIP 61
           A+ASAMLIV VI PPP   SS SSSSSSFQPYPKAS+HN           +P   KW+IP
Sbjct: 589 ASASAMLIVGVIAPPPPPPSSSSSSSSSFQPYPKASMHN----------MVPHSKKWTIP 648

Query: 62  LNYSFLPTSLPADSEFSP 80
           L++SFLP SLPADS+ SP
Sbjct: 649 LHHSFLPISLPADSQISP 656

[Close]

BLAST of HG10021128 vs. NCBI nr
Match: XP_023001644.1 (uncharacterized protein LOC111495716 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 7.2e-13
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 2   ATASAMLIVRVIPPP-PSSSSSPSSSSSSFQPYPKASLHNNPPINHNVPINIPQPLKWSI 61
           A+ASAML+V VIPPP  +SSSS SSSSSSFQPYPKAS+HN           +P   KW+I
Sbjct: 632 ASASAMLLVGVIPPPSAASSSSSSSSSSSFQPYPKASMHN----------MVPHSQKWTI 691

Query: 62  PLNYSFLPTSLPADSEFSP 80
           PL++SFLP SLPADS+ SP
Sbjct: 692 PLHHSFLPISLPADSQISP 700

[Close]

BLAST of HG10021128 vs. ExPASy TrEMBL
Match: A0A0A0LX78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066550 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.0e-20
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MATASAMLIVRVIPPP--PSSSSSPSSSSSSFQPYPKASLHN-NPPINHNVPINIPQPLK 60
          MATASAMLIVRVIPP    SSS S SSSSSSFQ YPKAS+ N  PP N N PINIP   K
Sbjct: 1  MATASAMLIVRVIPPAHFSSSSFSSSSSSSSFQAYPKASMDNQTPPTNFNAPINIPHSQK 60

Query: 61 WSIPLNYSFLPTSLPADSEFSPLN 82
          W+IPLNYSFLPTSLPAD + SPLN
Sbjct: 61 WTIPLNYSFLPTSLPADPQISPLN 84

[Close]

BLAST of HG10021128 vs. ExPASy TrEMBL
Match: A0A1S4DSD7 ((3S,6E)-nerolidol synthase 1-like OS=Cucumis melo OX=3656 GN=LOC103485748 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MATASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHN-NPPINHNVPINIPQPLKWS 60
          MA ASAML+ RVIPP  SSSS   SSSSSFQPYPKAS+ N  PPIN +VPINIP   KW+
Sbjct: 1  MAAASAMLMGRVIPPRFSSSS--FSSSSSFQPYPKASMDNETPPINFSVPINIPHSQKWT 60

Query: 61 IPLNYSFLPTSLPADSEFSPLN 82
          IPLNYSFLPTSLPAD + SP N
Sbjct: 61 IPLNYSFLPTSLPADPQISPFN 80

[Close]

BLAST of HG10021128 vs. ExPASy TrEMBL
Match: A0A6J1EH51 (uncharacterized protein LOC111434068 OS=Cucurbita moschata OX=3662 GN=LOC111434068 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 2   ATASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHNNPPINHNVPINIPQPLKWSIP 61
           A+ASAMLIV VI PPP   SS SSSSSSFQPYPKAS+HN           +P   KW+IP
Sbjct: 589 ASASAMLIVGVIAPPPPPPSSSSSSSSSFQPYPKASMHN----------MVPHSKKWTIP 648

Query: 62  LNYSFLPTSLPADSEFSP 80
           L++SFLP SLPADS+ SP
Sbjct: 649 LHHSFLPISLPADSQISP 656

[Close]

BLAST of HG10021128 vs. ExPASy TrEMBL
Match: A0A6J1KNB1 (uncharacterized protein LOC111495716 OS=Cucurbita maxima OX=3661 GN=LOC111495716 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 2   ATASAMLIVRVIPPP-PSSSSSPSSSSSSFQPYPKASLHNNPPINHNVPINIPQPLKWSI 61
           A+ASAML+V VIPPP  +SSSS SSSSSSFQPYPKAS+HN           +P   KW+I
Sbjct: 632 ASASAMLLVGVIPPPSAASSSSSSSSSSSFQPYPKASMHN----------MVPHSQKWTI 691

Query: 62  PLNYSFLPTSLPADSEFSP 80
           PL++SFLP SLPADS+ SP
Sbjct: 692 PLHHSFLPISLPADSQISP 700

[Close]

BLAST of HG10021128 vs. ExPASy TrEMBL
Match: A0A6J1CEA4 ((3S,6E)-nerolidol synthase 1-like OS=Momordica charantia OX=3673 GN=LOC111010875 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 4  ASAMLIVRVIPPPPSSSSSPSSSSSSFQPYPKASLHNNPPINHNV-----PINIPQPLKW 63
          A+A LIV++ P         SSSSSSF P P AS+    P++  V     P + P   KW
Sbjct: 3  AAAQLIVQIRP------QFSSSSSSSFHPSPMASMQKGSPLSPQVAKVSSPHHNPPFQKW 62

Query: 64 SIPLNYSFLPTSLPADSEFSPL 81
          +IPLN+S LPTS+PADSE + L
Sbjct: 63 TIPLNHSLLPTSIPADSESTHL 78

The following BLAST results are available for this feature:

BLAST of HG10021128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648431.2	1.0e-19	75.00	(3S,6E)-nerolidol synthase 1 [Cucumis sativus] >KAE8652684.1 hypothetical protei...	[more]
XP_038893851.1	3.0e-19	72.29	LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1-like [Benincasa hispida]	[more]
XP_016898901.1	2.6e-18	73.17	PREDICTED: (3S,6E)-nerolidol synthase 1-like [Cucumis melo]	[more]
XP_022927129.1	4.2e-13	62.82	uncharacterized protein LOC111434068 [Cucurbita moschata]	[more]
XP_023001644.1	7.2e-13	63.29	uncharacterized protein LOC111495716 [Cucurbita maxima]	[more]

BLAST of HG10021128 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX78	5.0e-20	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066550 PE=4 SV=1	[more]
A0A1S4DSD7	1.2e-18	73.17	(3S,6E)-nerolidol synthase 1-like OS=Cucumis melo OX=3656 GN=LOC103485748 PE=4 S...	[more]
A0A6J1EH51	2.0e-13	62.82	uncharacterized protein LOC111434068 OS=Cucurbita moschata OX=3662 GN=LOC1114340...	[more]
A0A6J1KNB1	3.5e-13	63.29	uncharacterized protein LOC111495716 OS=Cucurbita maxima OX=3661 GN=LOC111495716...	[more]
A0A6J1CEA4	1.7e-04	46.34	(3S,6E)-nerolidol synthase 1-like OS=Momordica charantia OX=3673 GN=LOC111010875...	[more]

BLAST of HG10021128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021128.1	HG10021128.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity