Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA
mRNA sequence
ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA
Coding sequence (CDS)
ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA
Protein sequence
MGEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHEPPAQRRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSITDGSGEKKRIQKSKSTN
Homology
BLAST of HG10021042 vs. NCBI nr
Match:
KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])
HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 109/184 (59.24%), Postives = 129/184 (70.11%), Query Frame = 0
Query: 2 GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
GE+N VI+ A+ PP SP +K A K T SSS EPHTP+ VLG KRPA +SP D
Sbjct: 3 GEFNHVIHHAIFNPPLSP-GRKNAPKVTESSS-----VEPHTPDAVLGKKRPASVSPNDV 62
Query: 62 SRHE-PPAQRRRTNNSE-GSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
S H+ PP Q+ +T+N+E SSSGVPM+DLIGKVE+M+KMLKRV D LVSDPLL CFV
Sbjct: 63 SEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFV 122
Query: 122 SAQTLLMACTAELISRSTTKAK-PLDHQSSEGSINYSSIT---------DGSGEKKRIQK 173
SAQTLLMACTAEL+S+ST K K PL HQ S+ SINY S T GSGE+K +K
Sbjct: 123 SAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGERK-FKK 179
BLAST of HG10021042 vs. NCBI nr
Match:
KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])
HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 0
Query: 2 GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
GE N + + PPSSP SKK KF SS EP TP+ V G KRPAP+SP D
Sbjct: 3 GELN--LAHGIFNPPSSP-SKKNTPKFPGRSS-----VEPQTPDPVHGKKRPAPVSPNDD 62
Query: 62 SRHE-PPAQRRRTNNS-EGSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
+H+ PP Q+R+T+N+ EGSSS VPM+DLI KVE+MVKMLKRV KD LVSDPLL CFV
Sbjct: 63 FQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFV 122
Query: 122 SAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSIT---DGSGEKKRIQK 169
SAQ LL ACTAELISRST KAKPL HQ S+ SINY S T GSGE K+I+K
Sbjct: 123 SAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167
BLAST of HG10021042 vs. NCBI nr
Match:
XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 6 QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
Q+++ + + PSSPS + ++SD + P TPE G K S + S +
Sbjct: 195 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 254
Query: 66 PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
+ + +T+ + GSS VP++DLI +++EMV MLK LV+ PLLGCFVSAQTLL
Sbjct: 255 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 314
Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
MAC EL+S S K+K L HQ SE S+NYSS T DG+GEKK
Sbjct: 315 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352
BLAST of HG10021042 vs. NCBI nr
Match:
KAA0056835.1 (p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 6 QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
Q+++ + + PSSPS + ++SD + P TPE G K S + S +
Sbjct: 184 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 243
Query: 66 PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
+ + +T+ + GSS VP++DLI +++EMV MLK LV+ PLLGCFVSAQTLL
Sbjct: 244 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 303
Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
MAC EL+S S K+K L HQ SE S+NYSS T DG+GEKK
Sbjct: 304 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341
BLAST of HG10021042 vs. NCBI nr
Match:
KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 85.5 bits (210), Expect = 4.9e-13
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 0
Query: 1 MGEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGD 60
MG + VI++ + P SP +P+ ++ P TP + KR AP SP
Sbjct: 1 MGGDSSVISEIIFSAPRSP---RPST--DSKETEPISPPNPVTPNLRGSRKRSAP-SPMS 60
Query: 61 SSRHEPPAQRRRTN--------NSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDP 120
+ HEPP QRRR + + S +P+ LIG +EE+VK LKRV G + L+ DP
Sbjct: 61 NPEHEPPTQRRRDSGDGNKLEYGEDADWSSIPLARLIGNMEEVVKSLKRVGGQEGLMIDP 120
Query: 121 LLGCFVSAQTLLMACTAELISRS 136
LLGC VS+QT +M C A LISR+
Sbjct: 121 LLGCLVSSQTSMMLCLAHLISRT 137
BLAST of HG10021042 vs. ExPASy TrEMBL
Match:
A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 9.6e-39
Identity = 109/184 (59.24%), Postives = 129/184 (70.11%), Query Frame = 0
Query: 2 GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
GE+N VI+ A+ PP SP +K A K T SSS EPHTP+ VLG KRPA +SP D
Sbjct: 3 GEFNHVIHHAIFNPPLSP-GRKNAPKVTESSS-----VEPHTPDAVLGKKRPASVSPNDV 62
Query: 62 SRHE-PPAQRRRTNNSE-GSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
S H+ PP Q+ +T+N+E SSSGVPM+DLIGKVE+M+KMLKRV D LVSDPLL CFV
Sbjct: 63 SEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFV 122
Query: 122 SAQTLLMACTAELISRSTTKAK-PLDHQSSEGSINYSSIT---------DGSGEKKRIQK 173
SAQTLLMACTAEL+S+ST K K PL HQ S+ SINY S T GSGE+K +K
Sbjct: 123 SAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGERK-FKK 179
BLAST of HG10021042 vs. ExPASy TrEMBL
Match:
A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 0
Query: 2 GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
GE N + + PPSSP SKK KF SS EP TP+ V G KRPAP+SP D
Sbjct: 3 GELN--LAHGIFNPPSSP-SKKNTPKFPGRSS-----VEPQTPDPVHGKKRPAPVSPNDD 62
Query: 62 SRHE-PPAQRRRTNNS-EGSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
+H+ PP Q+R+T+N+ EGSSS VPM+DLI KVE+MVKMLKRV KD LVSDPLL CFV
Sbjct: 63 FQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFV 122
Query: 122 SAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSIT---DGSGEKKRIQK 169
SAQ LL ACTAELISRST KAKPL HQ S+ SINY S T GSGE K+I+K
Sbjct: 123 SAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167
BLAST of HG10021042 vs. ExPASy TrEMBL
Match:
A0A1S3B2P2 (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 6 QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
Q+++ + + PSSPS + ++SD + P TPE G K S + S +
Sbjct: 195 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 254
Query: 66 PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
+ + +T+ + GSS VP++DLI +++EMV MLK LV+ PLLGCFVSAQTLL
Sbjct: 255 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 314
Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
MAC EL+S S K+K L HQ SE S+NYSS T DG+GEKK
Sbjct: 315 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352
BLAST of HG10021042 vs. ExPASy TrEMBL
Match:
A0A5A7UTH3 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0
Query: 6 QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
Q+++ + + PSSPS + ++SD + P TPE G K S + S +
Sbjct: 184 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 243
Query: 66 PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
+ + +T+ + GSS VP++DLI +++EMV MLK LV+ PLLGCFVSAQTLL
Sbjct: 244 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 303
Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
MAC EL+S S K+K L HQ SE S+NYSS T DG+GEKK
Sbjct: 304 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341
BLAST of HG10021042 vs. ExPASy TrEMBL
Match:
A0A0A0LRJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 77 EGSSS-GVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFVSAQTLLMACTAELISR 136
EGSSS G +DLI K+EE V+ +K V KD LVS PLL CFV+AQTLL+ CT +L
Sbjct: 44 EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
Query: 137 STTKAKPLDHQSSEGSINYSSIT----DGSGEKKRIQK 169
ST DHQ SE S+ SS T D S E+ +I+K
Sbjct: 104 STG-----DHQRSEVSVKDSSTTNEAADRSVEENKIKK 136
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0056836.1 | 2.0e-38 | 59.24 | p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa] | [more] |
| KGN64496.1 | 2.9e-37 | 61.85 | hypothetical protein Csa_013860 [Cucumis sativus] | [more] |
| XP_008440827.1 | 1.3e-18 | 43.37 | PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00... | [more] |
| KAA0056835.1 | 1.3e-18 | 43.37 | p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa] | [more] |
| KAG6584107.1 | 4.9e-13 | 39.86 | hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BJN2 | 9.6e-39 | 59.24 | p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1 | [more] |
| A0A0A0LX14 | 1.4e-37 | 61.85 | p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1 | [more] |
| A0A1S3B2P2 | 6.5e-19 | 43.37 | uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| A0A5A7UTH3 | 6.5e-19 | 43.37 | p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1 | [more] |
| A0A0A0LRJ2 | 1.5e-07 | 51.02 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
