HG10020934 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10020934
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S21
LocationChr05: 3720093 .. 3721977 (+)
RNA-Seq ExpressionHG10020934
SyntenyHG10020934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCCGCCGCAACATCATCTCTCACGAAGTTCTTCTCCTCCCTCTCAATCTCCAAATCATCACAATTACACCATAACTCCGTCTCTACAAATTTTCAGTCTCTTCCAAAGTCTAAACCGGCTCGGTTGTTGGCCACCAGGGACTCTGTTACGCCTTCTTCCCAAGAACCCAAGGGTTTTTTTACAGGCATAAATTACAATGTTCTGGTCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTAGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCGGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAAAATAGCCAGGCGAAGAGAAAAAGGAAAGCTAGAGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATGATCTCGTTTCTAAAGCAAAAGCAGATGAGTTGTTCATGGCTGCATTTGGTTTCTGTGTGATTTTGTTATTCTGAATCTTCTTTCCTCTTCACCATGGTTGAATGGTATGTTTTCTTTCATTTTCTGGGCAACCAAACAGTGGGTTTCGATGTCAACTTCTAAATCGTGTTCCTCTTTCAAATGCTCAATTCAAACCTTGGAACCCTTGATCCACTAGCACCACCATTGTTAATCTCCCTTGACATTTTCTAAAACTCAGAAGCCAGCCTCAGATTGATTGATATCAATTCAAAGAATTAGTCTATCAAAACTTCTTCCATTTTAGTGGAAGAGGGAAACAGGGGATAGTGAAGATTATTCAATTACAGGTTGAAGCTTGAGTAAAAGTTATCATAAAAAAAGGAAACTAGATGGTTGAAAATATCTGAAATTAGCTATGAAGAAACAAACAGCTTAAATTGAAAGATGCTGCTTAGTTACAAGGTGACCCATGATTAGTATTAAGGTTATTGGTTGTGTTAGTATGACTTTTGTATTTAAAGAACAATCTTTTCAGCTCTGATTTGAATTGTCTAAATAATTCTGATGCAAGGAAGAAAACTTTATATGATGCCCATGGAATCATATTATCAAACATTGAGATTTCAATGTTTATTAAAATGAGATAAAAGGCATGATGCATGACTTTGATAAAGAGCTAAGAGGTCTTCGGTTTAATTCATGGTAGCCACTTACTTAGAATTTAATATCCTACAAGTTTTTTTGGCAACCAAATGTTGTAAGGTCAGACATGTTATCTCATGAAATTAATTGAGGTGCACGAAGCTGGCTTGGACACTCACGAATATTAAAAAGAAAATAACAAAAAAAAAAAAATTATTCAGCTGTGCTATTCTCTTGTGGGTTGTGTTGCTGTTATGTTCTCTATAATAGTTTTCATTTTTGCTTGAAATCTGGGTTATTCTTACCTATAAAAGGTCCCACTCCTTGTATTGCCTTTTAGTTAAACAACTAGTGGGTAGAGATTCAAGTCTCTAACCTTTTGATGGATGACCTGATCTCCTAACCAGTTGAATTATACTCAGTCGGCCCTACTCTTGTATTGTGTTCGTGCTCCATCCTATTAATCTTAAAAATACGTTTGAGAGACAACTAGTTTTCAATACAAGAGTTATCTCCAAACATCCAAGCTCTTATGACATGATTAAATCTCTTATAAGTCTCCTTGGGTTCTGTATTATAAAAAAATGGAGAATGGGAAAAATGAAGATTGTTTCATTCAGTTCACTCTCATTGCAGATTCTTGTGTTGCCATTTTGAATGCAAGCAATGGTTTTAAAGTAATGTATATGATTATCCAATTGCAGATGGTTTAGGAGGCCTCAATCAAGAGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG

mRNA sequence

ATGGCCGCCGCCGCCGCAACATCATCTCTCACGAAGTTCTTCTCCTCCCTCTCAATCTCCAAATCATCACAATTACACCATAACTCCGTCTCTACAAATTTTCAGTCTCTTCCAAAGTCTAAACCGGCTCGGTTGTTGGCCACCAGGGACTCTGTTACGCCTTCTTCCCAAGAACCCAAGGGTTTTTTTACAGGCATAAATTACAATGTTCTGGTCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTAGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCGGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAAAATAGCCAGGCGAAGAGAAAAAGGAAAGCTAGAGAAGCTGCTAAGAGGAATCGCAAGAGATGGTTTAGGAGGCCTCAATCAAGAGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG

Coding sequence (CDS)

ATGGCCGCCGCCGCCGCAACATCATCTCTCACGAAGTTCTTCTCCTCCCTCTCAATCTCCAAATCATCACAATTACACCATAACTCCGTCTCTACAAATTTTCAGTCTCTTCCAAAGTCTAAACCGGCTCGGTTGTTGGCCACCAGGGACTCTGTTACGCCTTCTTCCCAAGAACCCAAGGGTTTTTTTACAGGCATAAATTACAATGTTCTGGTCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTAGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCGGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAAAATAGCCAGGCGAAGAGAAAAAGGAAAGCTAGAGAAGCTGCTAAGAGGAATCGCAAGAGATGGTTTAGGAGGCCTCAATCAAGAGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG

Protein sequence

MAAAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS
Homology
[Close]
BLAST of HG10020934 vs. NCBI nr
Match: XP_038894121.1 (30S ribosomal protein S21, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 8.6e-71
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSSLTKFFSSLSISKSSQ+HHNSVS N QSLPKSKPARL ATR SVTPSSQEPKG 
Sbjct: 2   AAAATSSLTKFFSSLSISKSSQIHHNSVSINLQSLPKSKPARLFATRGSVTPSSQEPKGV 61

Query: 63  FTGIN-YNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
           F+G+  YNVL+TVGENESEDQ+VNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  FSGMRIYNVLITVGENESEDQLVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS 169
           KRNRKRWFRRPQSRAEEQ  ++TPQRKNRDEEDDNWDFYQVDLPYCS
Sbjct: 122 KRNRKRWFRRPQSRAEEQPNKKTPQRKNRDEEDDNWDFYQVDLPYCS 168

[Close]
BLAST of HG10020934 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 238.8 bits (608), Expect = 3.4e-59
Identity = 135/167 (80.84%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS 169
           KRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Sbjct: 122 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]
BLAST of HG10020934 vs. NCBI nr
Match: XP_004152510.2 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_014065 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-57
Identity = 133/165 (80.61%), Postives = 142/165 (86.06%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS N QSLP SK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGV 61

Query: 63  -FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
               +NYN+L+TVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY 167
           KRNRKR FRRPQS   EQ  Q+TP+ KNRDEEDDNWDFYQVDLPY
Sbjct: 122 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]
BLAST of HG10020934 vs. NCBI nr
Match: KAA0055302.1 (Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-52
Identity = 135/216 (62.50%), Postives = 146/216 (67.59%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRW-------------------------------------------------FRRP 169
           KRNRKR                                                  FRRP
Sbjct: 122 KRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRRP 181

[Close]
BLAST of HG10020934 vs. NCBI nr
Match: TYJ99226.1 (putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-52
Identity = 135/216 (62.50%), Postives = 146/216 (67.59%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRW-------------------------------------------------FRRP 169
           KRNRKR                                                  FRRP
Sbjct: 122 KRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRRP 181

[Close]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-16
Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = 0 

Query: 18  SISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGFFTGINYNVLVTVGEN 77
           SIS SS+ H N+         +  P  L+A    V PS       +    YNV V V +N
Sbjct: 41  SISISSKKHENAAIAK----KEEYPGDLMAV---VCPSLAFSNTLYFRSAYNVQVLVDDN 100

Query: 78  ESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFRRPQSRAE 137
           E+E++++NRFRR+V+RAG++QECKRRR+FEN Q ++KRK REAAKRN +R  RR   R  
Sbjct: 101 ENEERLLNRFRREVMRAGVIQECKRRRYFENKQEEKKRKHREAAKRNSRR--RRGPFRGP 160

Query: 138 EQSKQETPQRKNRDEEDDNWDFYQVDLPY 167
              K+E  +   ++++ DNWD  +   P+
Sbjct: 161 FPGKEEATKVDKKEDDGDNWDMPEGGAPF 180

[Close]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match: Q8RB59 (30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsU PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-05
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 72  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           V VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+KA  A KR  K
Sbjct: 4   VRVGENESLDSALRRFRRQCSKAGVLSELRKREHYESPSVKRKKKAEAARKRKYK 58

[Close]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match: Q7NHA1 (30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rpsU2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 8.5e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 72  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR 126
           V +GENES +  + RF++++ +AGIL E KRR  +E   A+RKRKA  A KR R
Sbjct: 4   VRLGENESIESALKRFKKKIQKAGILSEIKRRERYEKPSARRKRKAEAARKRRR 57

[Close]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match: Q2JM43 (30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 72  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 128
           VT+GENE  +  + RF+RQV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Sbjct: 4   VTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAVRRNRRK 58

[Close]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match: B0KA63 (30S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 72  VTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           V VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+K+  A KR  K
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKRKKKSEAARKRKYK 58

[Close]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match: E5GBW8 (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 135/167 (80.84%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS 169
           KRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Sbjct: 122 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match: A0A1S3AZ70 (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 135/167 (80.84%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPYCS 169
           KRNRKR FRRPQS  E+Q  ++TP+ KN+DEEDDNWDFYQVDLPY S
Sbjct: 122 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match: A0A0A0LWJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.9e-58
Identity = 133/165 (80.61%), Postives = 142/165 (86.06%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS N QSLP SK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGV 61

Query: 63  -FTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
               +NYN+L+TVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRWFRRPQSRAEEQSKQETPQRKNRDEEDDNWDFYQVDLPY 167
           KRNRKR FRRPQS   EQ  Q+TP+ KNRDEEDDNWDFYQVDLPY
Sbjct: 122 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match: A0A5A7UHJ6 (Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001450 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 135/216 (62.50%), Postives = 146/216 (67.59%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRW-------------------------------------------------FRRP 169
           KRNRKR                                                  FRRP
Sbjct: 122 KRNRKRLADLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRRP 181

[Close]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match: A0A5D3BJF5 (Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004370 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 135/216 (62.50%), Postives = 146/216 (67.59%), Query Frame = 0 

Query: 3   AAAATSSLTKFFSSLSISKSSQLHHNSVSTNFQSLPKSKPARLLATRDSVTPSSQEPKGF 62
           AAAATSS+T FFS LSISKSSQ+HHNSVS NFQSLPKSK  RL A+R +V  SSQEPKG 
Sbjct: 2   AAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKGV 61

Query: 63  FTGI-NYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 122
            + I NYNVL+TVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREAA
Sbjct: 62  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121

Query: 123 KRNRKRW-------------------------------------------------FRRP 169
           KRNRKR                                                  FRRP
Sbjct: 122 KRNRKRLADLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFRRP 181

[Close]
BLAST of HG10020934 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 56/117 (47.86%), Postives = 82/117 (70.09%), Query Frame = 0 

Query: 52  VTPSSQEPKGFFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQA 111
           + PS       F    YNV V V +NESE+++VNRFRR+V+R G++QECKRRR+FEN Q 
Sbjct: 69  ICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQD 128

Query: 112 KRKRKAREAAKRNRKRWFRRPQSRAEEQSKQE---TPQRKNRDEEDDNWDFYQVDLP 166
           ++KR+ R+AAKRN+K   RRPQ+R  +++++E     + K +DEE+DNW+    D+P
Sbjct: 129 EKKRRTRDAAKRNKK---RRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDVP 182

[Close]
BLAST of HG10020934 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-12
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 62  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121
           FF    YNV V   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAA
Sbjct: 74  FFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAA 133

Query: 122 KRNRKRWFR-RPQSRAEEQSKQETPQRKNRDEEDDNWDF--YQVDLPY 167
           K+ RKR    +P+  +  + ++        DE+DD+W+     +++PY
Sbjct: 134 KKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPEDIEIPY 181

[Close]
BLAST of HG10020934 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-11
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 62  FFTGINYNVLVTVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 121
           FF    YNV V   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAA
Sbjct: 74  FFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAA 133

Query: 122 KRNRKR 128
           K+ RKR
Sbjct: 134 KKYRKR 139

The following BLAST results are available for this feature:
BLAST of HG10020934 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894121.18.6e-7190.4230S ribosomal protein S21, chloroplastic-like [Benincasa hispida][more]
XP_008439325.13.4e-5980.84PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc... [more]
XP_004152510.21.4e-5780.6130S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypotheti... [more]
KAA0055302.12.3e-5262.50Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa][more]
TYJ99226.12.3e-5262.50putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa][more]
BLAST of HG10020934 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P820242.2e-1641.6130S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
Q8RB595.0e-0550.9130S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis ... [more]
Q7NHA18.5e-0550.0030S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 74... [more]
Q2JM431.1e-0450.0030S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32133... [more]
B0KA631.1e-0449.0930S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33... [more]
BLAST of HG10020934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GBW81.6e-5980.84Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV... [more]
A0A1S3AZ701.6e-5980.84uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=... [more]
A0A0A0LWJ66.9e-5880.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1[more]
A0A5A7UHJ61.1e-5262.50Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BJF51.1e-5262.50Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of HG10020934 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27160.11.5e-2047.86Ribosomal protein S21 family protein [more]
AT5G63300.13.3e-1241.67Ribosomal protein S21 family protein [more]
AT5G63300.24.8e-1156.06Ribosomal protein S21 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 73..81
score: 47.22
coord: 81..90
score: 35.0
coord: 93..103
score: 44.7
coord: 105..115
score: 42.42
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 71..127
e-value: 5.1E-15
score: 53.0
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 72..125
e-value: 1.4E-16
score: 60.0
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 52..166
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 71..125
score: 14.602215
IPR038380Ribosomal protein S21 superfamilyGENE3D1.20.5.1150Ribosomal protein S8coord: 85..122
e-value: 7.1E-12
score: 46.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..155
NoneNo IPR availablePANTHERPTHR21109:SF17PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATEDcoord: 52..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10020934.1HG10020934.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome