HG10020470 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020470
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 32084120 .. 32084801 (+)
RNA-Seq Expression	HG10020470
Synteny	HG10020470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGCGCAGAGATTGTTTTCTGGCATTGTTTTTCTGTTATGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCGAGAAAGTTGTTAGAGTCGGCTTCCAACGATAATTCCACGAGAACGTCCCCAGTAATCATCTACTTTCTTGAAATAAGAAAAAGAATCAAAGAAACAATACTATCTTTGCTTACTATCTTATGAACTTTTCGTTTTCGCCTTTTAGGGTTCCCCACTCATCAGTCCGGTTCCTTCGCTGAACAACTCGGATTCTGTACCCGTTAACGGAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCGTCGTCCAATGTGGATGCGAAAGCAAATAATTCGAGTTCCAGTAGTTCACCTGCTATAAGCGAGACTGGTAGCAGTAAGCCTTCTGACAAAAAGAAGGAGAACGGGACTGAACCCAGTCCTCAATCAAGTAATCGTGAAACTTGTGATGGGGTACCTGACAACAAGAAGTGCCGGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTAAACACGAGTTTCTCTTCGGCCTTATCAGCTCTCCAAGCTTGATTTTTACCATCCTTTTCCGTTTTCTTCCGGCGTGGATTTTGATTCCATTTTCTGCTACTTTAGGATTTAATATTTCTTGA

mRNA sequence

ATGGCGATGCGCAGAGATTGTTTTCTGGCATTGTTTTTCTGTTATGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCGAGAAAGTTGTTAGAGTCGGCTTCCAACGATAATTCCACGAGAACGTCCCCAGGTTCCCCACTCATCAGTCCGGTTCCTTCGCTGAACAACTCGGATTCTGTACCCGTTAACGGAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCGTCGTCCAATGTGGATGCGAAAGCAAATAATTCGAGTTCCAGTAGTTCACCTGCTATAAGCGAGACTGGTAGCAGTAAGCCTTCTGACAAAAAGAAGGAGAACGGGACTGAACCCAGTCCTCAATCAAGTAATCGTGAAACTTGTGATGGGGTACCTGACAACAAGAAGTGCCGGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTAAACACGAGTTTCTCTTCGGCCTTATCAGCTCTCCAAGCTTGATTTTTACCATCCTTTTCCGTTTTCTTCCGGCGTGGATTTTGATTCCATTTTCTGCTACTTTAGGATTTAATATTTCTTGA

Coding sequence (CDS)

ATGGCGATGCGCAGAGATTGTTTTCTGGCATTGTTTTTCTGTTATGCAGTTGTTTCGGAGGTAACCAATGCCTCGCTTTGGGACTCGAGAAAGTTGTTAGAGTCGGCTTCCAACGATAATTCCACGAGAACGTCCCCAGGTTCCCCACTCATCAGTCCGGTTCCTTCGCTGAACAACTCGGATTCTGTACCCGTTAACGGAAAGAAGAAGCAAATTGAACCACCCCCGCCTGCGCCCAACAACTCGTCGTCCAATGTGGATGCGAAAGCAAATAATTCGAGTTCCAGTAGTTCACCTGCTATAAGCGAGACTGGTAGCAGTAAGCCTTCTGACAAAAAGAAGGAGAACGGGACTGAACCCAGTCCTCAATCAAGTAATCGTGAAACTTGTGATGGGGTACCTGACAACAAGAAGTGCCGGGACCAGAAGAAGTTGGTTGCTTGTATCCAAAGTAATCTTATTGGTAAACACGAGTTTCTCTTCGGCCTTATCAGCTCTCCAAGCTTGATTTTTACCATCCTTTTCCGTTTTCTTCCGGCGTGGATTTTGATTCCATTTTCTGCTACTTTAGGATTTAATATTTCTTGA

Protein sequence

MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNSDSVPVNGKKKQIEPPPPAPNNSSSNVDAKANNSSSSSSPAISETGSSKPSDKKKENGTEPSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLIGKHEFLFGLISSPSLIFTILFRFLPAWILIPFSATLGFNIS

Homology

[Close]

BLAST of HG10020470 vs. NCBI nr
Match: XP_038904076.1 (uncharacterized protein LOC120090465 [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 7.9e-60
Identity = 136/160 (85.00%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MA+RRDCFLALFFCYAVVSEVTNA+ WDSRKLLE ASN NSTRTSPGSPLISPVPS+NNS
Sbjct: 1   MAIRRDCFLALFFCYAVVSEVTNATQWDSRKLLEPASNHNSTRTSPGSPLISPVPSVNNS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAK-ANNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DSVPVNGKKK  EPP PAPN SSSNVD K  NNSSSSSSPAISETGS KPSD KKENGTE
Sbjct: 61  DSVPVNGKKKHNEPPLPAPNKSSSNVDTKLLNNSSSSSSPAISETGSRKPSDTKKENGTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLIGKHEF 160
               SSNRETCDGVPDN KCRDQKKLVACIQSNLI    F
Sbjct: 121 ----SSNRETCDGVPDNNKCRDQKKLVACIQSNLIESRNF 156

[Close]

BLAST of HG10020470 vs. NCBI nr
Match: XP_022982599.1 (uncharacterized protein LOC111481426 [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-55
Identity = 122/154 (79.22%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF CYAVVSEVTNASLWDSRKLLE ASN+NSTRTS GSPLISP+ S+N S
Sbjct: 1   MAMRRDCFLALFLCYAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPLISPISSVNIS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKANNSSSSSSPAISETGSSKPSDKKKENGTEP 120
           DS PV GKKKQ+EPPPPAPNNSSS++++  NNSSS SS  +SETGS KP D KKE GTE 
Sbjct: 61  DSAPVIGKKKQVEPPPPAPNNSSSSLESNVNNSSSGSSSTVSETGSGKPFDTKKEKGTEA 120

Query: 121 SPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
           S  SS  ETCDGVPDN KCRDQKKL+ACIQSNLI
Sbjct: 121 SALSSKHETCDGVPDNNKCRDQKKLIACIQSNLI 154

[Close]

BLAST of HG10020470 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-54
Identity = 122/155 (78.71%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF C+AVVSEVTNASLWDSRKLLE ASN+NSTRTS GSP+ISP+ S+N S
Sbjct: 1   MAMRRDCFLALFLCHAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPVISPISSVNIS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV GKKKQ+EPPPPAPNNSSS++++   NNSSS SS  +SETGS KP D KKENGTE
Sbjct: 61  DSAPVIGKKKQVEPPPPAPNNSSSSLESNVLNNSSSGSSSTVSETGSGKPFDTKKENGTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
            S  SS  ETCDGVPDNKKCRDQKKL+ACIQSNLI
Sbjct: 121 ASALSSKHETCDGVPDNKKCRDQKKLIACIQSNLI 155

[Close]

BLAST of HG10020470 vs. NCBI nr
Match: KAG6580427.1 (hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.1 bits (562), Expect = 8.4e-54
Identity = 121/155 (78.06%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF C+AVVSEVTNASLWDSRKLLE ASN+NSTRTS GSP+ISP+ S+N S
Sbjct: 27  MAMRRDCFLALFLCHAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPVISPISSVNIS 86

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV GKKKQ+EPPPP+PNNSSS++++   NNSSS SS  +SETGS KP D KKENGTE
Sbjct: 87  DSAPVIGKKKQVEPPPPSPNNSSSSLESNVLNNSSSRSSSTVSETGSGKPIDTKKENGTE 146

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
            S  SS  ETCDGVPDNKKCRDQKKL+ACIQSNLI
Sbjct: 147 ASALSSKHETCDGVPDNKKCRDQKKLIACIQSNLI 181

[Close]

BLAST of HG10020470 vs. NCBI nr
Match: XP_022935129.1 (uncharacterized protein LOC111442092 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 3.2e-53
Identity = 120/155 (77.42%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF C+AVVSEVTNASLWDSRKLLE ASN+NSTRTS GSP+ISP+ S+N S
Sbjct: 1   MAMRRDCFLALFLCHAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPVISPISSVNIS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV GKKKQ+EPPPP+PNNSSS++++   NNSSS SS  +SETGS KP D KKENGTE
Sbjct: 61  DSAPVIGKKKQVEPPPPSPNNSSSSLESNVLNNSSSRSSSTVSETGSGKPIDTKKENGTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
            S  SS  ETCDGVPDNKKCRDQ KL+ACIQSNLI
Sbjct: 121 ASALSSKHETCDGVPDNKKCRDQNKLIACIQSNLI 155

[Close]

BLAST of HG10020470 vs. ExPASy TrEMBL
Match: A0A6J1J516 (uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.3e-55
Identity = 122/154 (79.22%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF CYAVVSEVTNASLWDSRKLLE ASN+NSTRTS GSPLISP+ S+N S
Sbjct: 1   MAMRRDCFLALFLCYAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPLISPISSVNIS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKANNSSSSSSPAISETGSSKPSDKKKENGTEP 120
           DS PV GKKKQ+EPPPPAPNNSSS++++  NNSSS SS  +SETGS KP D KKE GTE 
Sbjct: 61  DSAPVIGKKKQVEPPPPAPNNSSSSLESNVNNSSSGSSSTVSETGSGKPFDTKKEKGTEA 120

Query: 121 SPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
           S  SS  ETCDGVPDN KCRDQKKL+ACIQSNLI
Sbjct: 121 SALSSKHETCDGVPDNNKCRDQKKLIACIQSNLI 154

[Close]

BLAST of HG10020470 vs. ExPASy TrEMBL
Match: A0A6J1F4I5 (uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC111442092 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.6e-53
Identity = 120/155 (77.42%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRDCFLALF C+AVVSEVTNASLWDSRKLLE ASN+NSTRTS GSP+ISP+ S+N S
Sbjct: 1   MAMRRDCFLALFLCHAVVSEVTNASLWDSRKLLEPASNNNSTRTSQGSPVISPISSVNIS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV GKKKQ+EPPPP+PNNSSS++++   NNSSS SS  +SETGS KP D KKENGTE
Sbjct: 61  DSAPVIGKKKQVEPPPPSPNNSSSSLESNVLNNSSSRSSSTVSETGSGKPIDTKKENGTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
            S  SS  ETCDGVPDNKKCRDQ KL+ACIQSNLI
Sbjct: 121 ASALSSKHETCDGVPDNKKCRDQNKLIACIQSNLI 155

[Close]

BLAST of HG10020470 vs. ExPASy TrEMBL
Match: A0A6J1I2Q4 (uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.3e-49
Identity = 117/155 (75.48%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLL+ AS DNST TSP  PLISP  S+N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSMNHS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV+GKK++ EPPPPAPNNSSSN+D+K  NNSSS SS  +SE G+ KP D  K N TE
Sbjct: 61  DSAPVDGKKRR-EPPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNKRNRTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
              QSSNRE CDGVPDNKKCRDQKKLVACI+SN+I
Sbjct: 121 GGLQSSNREICDGVPDNKKCRDQKKLVACIESNII 154

[Close]

BLAST of HG10020470 vs. ExPASy TrEMBL
Match: A0A6J1FLM5 (uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC111446930 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 116/155 (74.84%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMR DCFLALFFCYAVVSEVTNASLWDSRKLL+ AS DNST TSP  PLISP  S N+S
Sbjct: 1   MAMRGDCFLALFFCYAVVSEVTNASLWDSRKLLDPASKDNSTGTSPVLPLISPNSSTNHS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAKA-NNSSSSSSPAISETGSSKPSDKKKENGTE 120
           DS PV+G KKQ EPPPPAPNNSSSN+D+K  NNSSS SS  +SE G+ KP D    N TE
Sbjct: 61  DSAPVDG-KKQREPPPPAPNNSSSNLDSKGLNNSSSGSSHNVSEAGNGKPLDTNNGNRTE 120

Query: 121 PSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
              QSSN E CDGVPDNKKCRDQKKLVACIQ+N+I
Sbjct: 121 GGLQSSNHEICDGVPDNKKCRDQKKLVACIQNNII 154

[Close]

BLAST of HG10020470 vs. ExPASy TrEMBL
Match: A0A6J1DXQ4 (uncharacterized protein LOC111024051 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024051 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 111/156 (71.15%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MAMRRDCFLALFFCYAVVSEVTNASLWDSRKLLESASNDNSTRTSPGSPLISPVPSLNNS 60
           MAMRRD FLALFF YAVVSEVT+ASLWDSRKLL+ A  DN+T TS  SP+I+P  S+NNS
Sbjct: 1   MAMRRDWFLALFFAYAVVSEVTHASLWDSRKLLDPAPKDNTTTTSAVSPVINPASSVNNS 60

Query: 61  DSVPVNGKKKQIEPPPPAPNNSSSNVDAK--ANNSSSSSSPAISETGSSKPSDKKKENGT 120
           DSVPVNG KK  EPPPPA NNS SNVD+K  +N+SS S  P +SETG+ KP   KK N T
Sbjct: 61  DSVPVNG-KKHTEPPPPALNNSLSNVDSKVLSNSSSGSPPPTVSETGNGKPFVTKKNNDT 120

Query: 121 EPSPQSSNRETCDGVPDNKKCRDQKKLVACIQSNLI 155
           E  PQSSNRE CDG+ D KKCRDQKKLVACI+SNLI
Sbjct: 121 EAGPQSSNRENCDGIADKKKCRDQKKLVACIKSNLI 155

The following BLAST results are available for this feature:

BLAST of HG10020470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904076.1	7.9e-60	85.00	uncharacterized protein LOC120090465 [Benincasa hispida]	[more]
XP_022982599.1	2.6e-55	79.22	uncharacterized protein LOC111481426 [Cucurbita maxima]	[more]
XP_023528429.1	2.9e-54	78.71	uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo]	[more]
KAG6580427.1	8.4e-54	78.06	hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935129.1	3.2e-53	77.42	uncharacterized protein LOC111442092 [Cucurbita moschata]	[more]

BLAST of HG10020470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J516	1.3e-55	79.22	uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426...	[more]
A0A6J1F4I5	1.6e-53	77.42	uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1I2Q4	2.3e-49	75.48	uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002...	[more]
A0A6J1FLM5	1.3e-47	74.84	uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC1114469...	[more]
A0A6J1DXQ4	4.5e-45	71.15	uncharacterized protein LOC111024051 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of HG10020470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..136
None	No IPR available	PANTHER	PTHR34200	DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1	coord: 3..155
None	No IPR available	PANTHER	PTHR34200:SF2	TRANSMEMBRANE PROTEIN	coord: 3..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020470.1	HG10020470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane