HG10020468 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020468
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein Wnt-3a like
Location	Chr04: 32071700 .. 32072354 (-)
RNA-Seq Expression	HG10020468
Synteny	HG10020468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACATCGGGAGATCCATGAGCCCTAGTCTTGGGCCTGCTCCTTTAGTCTCCAATAAGCCATCGAGGGAGAATAAACAAGATTCCTTGCTTGTTGCTTTCAAGCAAGCGATGAAAAGAAAACATACGGTGTTGGTCCAAATAAAAGCACAGTTAATGGCTTTAGCTTCTTCTAAGCTTCTCAGGGTAACTTTGATAATGTGGTTTAAACGGTTTACAAATTGATTTGCAGAGCATTGCCTGTTTGGTTTCTGTTGCAGTTGCAGTCGCAGTCGCAGCCAATGCCTTAACAGAAGAAATGGCAGTGATTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATACGAGAGACTGAGCTTTGAAGCCCGACTAAACCAAGCAATGTTGGAGCGGAGTCTTTCGGAGCCGAGGATGCTGAGGTCTCAACCGCAGGTGCTATTTGCTGGCTCAGTTCAACTACCATACTTGATAACAACTACTAATCAGCCTAGAAAAGGACGTTGTGGATCTACATTCAACTTCAACAACTTACTCAACAACTTACTCAAACCCATTTTGGAGAGGAAGGGTAGGGCAAAGAAGGAACGCCCACATTTCAAAAACCCCATGTCTTGGGAAGCCCTCAGTAAATCCATGCGCCTTTGA

mRNA sequence

ATGAAAAACATCGGGAGATCCATGAGCCCTAGTCTTGGGCCTGCTCCTTTAGTCTCCAATAAGCCATCGAGGGAGAATAAACAAGATTCCTTGCTTGTTGCTTTCAAGCAAGCGATGAAAAGAAAACATACGGTGTTGGTCCAAATAAAAGCACAGTTAATGGCTTTAGCTTCTTCTAAGCTTCTCAGGAGCATTGCCTGTTTGGTTTCTGTTGCAGTTGCAGTCGCAGTCGCAGCCAATGCCTTAACAGAAGAAATGGCAGTGATTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATACGAGAGACTGAGCTTTGAAGCCCGACTAAACCAAGCAATGTTGGAGCGGAGTCTTTCGGAGCCGAGGATGCTGAGGTCTCAACCGCAGGTGCTATTTGCTGGCTCAGTTCAACTACCATACTTGATAACAACTACTAATCAGCCTAGAAAAGGACGTTGTGGATCTACATTCAACTTCAACAACTTACTCAACAACTTACTCAAACCCATTTTGGAGAGGAAGGGTAGGGCAAAGAAGGAACGCCCACATTTCAAAAACCCCATGTCTTGGGAAGCCCTCAGTAAATCCATGCGCCTTTGA

Coding sequence (CDS)

ATGAAAAACATCGGGAGATCCATGAGCCCTAGTCTTGGGCCTGCTCCTTTAGTCTCCAATAAGCCATCGAGGGAGAATAAACAAGATTCCTTGCTTGTTGCTTTCAAGCAAGCGATGAAAAGAAAACATACGGTGTTGGTCCAAATAAAAGCACAGTTAATGGCTTTAGCTTCTTCTAAGCTTCTCAGGAGCATTGCCTGTTTGGTTTCTGTTGCAGTTGCAGTCGCAGTCGCAGCCAATGCCTTAACAGAAGAAATGGCAGTGATTAAGAAATTTGGGGATGAACACAGCAACTTGTTGGACCAATACGAGAGACTGAGCTTTGAAGCCCGACTAAACCAAGCAATGTTGGAGCGGAGTCTTTCGGAGCCGAGGATGCTGAGGTCTCAACCGCAGGTGCTATTTGCTGGCTCAGTTCAACTACCATACTTGATAACAACTACTAATCAGCCTAGAAAAGGACGTTGTGGATCTACATTCAACTTCAACAACTTACTCAACAACTTACTCAAACCCATTTTGGAGAGGAAGGGTAGGGCAAAGAAGGAACGCCCACATTTCAAAAACCCCATGTCTTGGGAAGCCCTCAGTAAATCCATGCGCCTTTGA

Protein sequence

MKNIGRSMSPSLGPAPLVSNKPSRENKQDSLLVAFKQAMKRKHTVLVQIKAQLMALASSKLLRSIACLVSVAVAVAVAANALTEEMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLPYLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMRL

Homology

[Close]

BLAST of HG10020468 vs. NCBI nr
Match: KAG6580428.1 (hypothetical protein SDJN03_20430, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-37
Identity = 91/124 (73.39%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 86  MAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRS----QPQVLFAGSVQL 145
           MAV+KKFGDEHSNLLDQYER SFEARLNQA+L RSLSEPR LRS    QPQ+  +GSV+L
Sbjct: 1   MAVVKKFGDEHSNLLDQYERRSFEARLNQAILGRSLSEPRTLRSQQQPQPQLSASGSVRL 60

Query: 146 PYLITT-TNQPRKGRCGSTFNFNNLLNNLLKPILER--KGRAKKERPHFKNPMSWEALSK 203
           P L+TT +NQPRKG  GSTFNFN ++N LLKPIL R  K RAKKE P F+NP+SW+ALSK
Sbjct: 61  PCLVTTSSNQPRKGGRGSTFNFNKIINKLLKPILGRKSKSRAKKELPDFRNPVSWKALSK 120

[Close]

BLAST of HG10020468 vs. NCBI nr
Match: OAY41638.1 (hypothetical protein MANES_09G117900v8 [Manihot esculenta])

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-19
Identity = 66/120 (55.00%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 84  EEMAVI-KKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLP 143
           +E+AVI K+FGDE S LLDQ+ERL+FE +LNQA+L RSLSEP + RS+ QV   G    P
Sbjct: 2   DEIAVILKRFGDEQSTLLDQFERLTFEVQLNQAILGRSLSEPSVGRSRFQVPLNGE-DPP 61

Query: 144 YLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMRL 203
            L+T   Q R+ R GS   FN +L  LLKPI  RK  AKKE    KNP SW+A S+S+R+
Sbjct: 62  ALVTQVRQGRRRRRGS--GFNKVLMKLLKPIFRRKDGAKKEVLDPKNPKSWKAFSRSLRV 118

[Close]

BLAST of HG10020468 vs. NCBI nr
Match: OIW00914.1 (hypothetical protein TanjilG_06294 [Lupinus angustifolius])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 85  EMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLPYL 144
           E  + K+FGDE S LLDQ+ERLSFEA LN+AM +RSLSEP + RS  Q  F  +V     
Sbjct: 16  EARIRKRFGDEQSTLLDQFERLSFEAHLNKAMFQRSLSEPGLPRSCTQSRFISNVAPS-- 75

Query: 145 ITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMR 202
           I    Q + G+  S   F  +L NLLKPIL RKG  +K  P  K+P+SW+  S+S+R
Sbjct: 76  IPMVTQVKHGKRPSGSRFYKVLKNLLKPILGRKGGTRKHVPDHKDPLSWKNFSRSLR 130

[Close]

BLAST of HG10020468 vs. NCBI nr
Match: PSS34765.1 (Protein Wnt-3a like [Actinidia chinensis var. chinensis])

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-17
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 88  VIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLPYLITT 147
           ++K+FGDE S LLDQ+ERL+FEA+L++A+L RSLSEP   R+QP +L       P  +  
Sbjct: 10  ILKRFGDEQSTLLDQFERLAFEAQLSRAILGRSLSEPSSSRTQPPLLLLAP---PPGMAV 69

Query: 148 TNQPRKG-RCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMRL 203
             Q + G RCG+   F  +L +LLKPIL R+   +KE P  K+P  W++ S+SMR+
Sbjct: 70  APQAQPGRRCGAGLGFKKVLKSLLKPILRRRPGGRKEGPDPKDPRLWKSFSRSMRV 122

[Close]

BLAST of HG10020468 vs. NCBI nr
Match: MBA0556092.1 (hypothetical protein [Gossypium lobatum] >MBA0854738.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 98.6 bits (244), Expect = 6.6e-17
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 81  ALTEEMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQ 140
           ++ E   V+++FGDE S LLDQ+ERLSFE +LNQA+L RSLSEP + + +PQ  +    Q
Sbjct: 9   SMDEISVVLRRFGDEQSTLLDQFERLSFEVQLNQAILSRSLSEPSVAK-RPQ--YCSQFQ 68

Query: 141 LPYLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRA-KKERPHFKNPMSWEALSKS 200
            P       + RKGR GS   FN +L  LLKPIL RKG A KK     +NPMSW+A S+S
Sbjct: 69  AP-PPAVKPKGRKGRRGS--GFNRVLKKLLKPILGRKGNAGKKPVADPQNPMSWKAFSRS 125

Query: 201 MRL 203
           +RL
Sbjct: 129 LRL 125

[Close]

BLAST of HG10020468 vs. ExPASy TrEMBL
Match: A0A2C9VA13 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117900 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 66/120 (55.00%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 84  EEMAVI-KKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLP 143
           +E+AVI K+FGDE S LLDQ+ERL+FE +LNQA+L RSLSEP + RS+ QV   G    P
Sbjct: 2   DEIAVILKRFGDEQSTLLDQFERLTFEVQLNQAILGRSLSEPSVGRSRFQVPLNGE-DPP 61

Query: 144 YLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMRL 203
            L+T   Q R+ R GS   FN +L  LLKPI  RK  AKKE    KNP SW+A S+S+R+
Sbjct: 62  ALVTQVRQGRRRRRGS--GFNKVLMKLLKPIFRRKDGAKKEVLDPKNPKSWKAFSRSLRV 118

[Close]

BLAST of HG10020468 vs. ExPASy TrEMBL
Match: A0A1J7H346 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06294 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-18
Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 85  EMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLPYL 144
           E  + K+FGDE S LLDQ+ERLSFEA LN+AM +RSLSEP + RS  Q  F  +V     
Sbjct: 16  EARIRKRFGDEQSTLLDQFERLSFEAHLNKAMFQRSLSEPGLPRSCTQSRFISNVAPS-- 75

Query: 145 ITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMR 202
           I    Q + G+  S   F  +L NLLKPIL RKG  +K  P  K+P+SW+  S+S+R
Sbjct: 76  IPMVTQVKHGKRPSGSRFYKVLKNLLKPILGRKGGTRKHVPDHKDPLSWKNFSRSLR 130

[Close]

BLAST of HG10020468 vs. ExPASy TrEMBL
Match: A0A2R6RXK4 (Protein Wnt-3a like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01873 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 88  VIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQLPYLITT 147
           ++K+FGDE S LLDQ+ERL+FEA+L++A+L RSLSEP   R+QP +L       P  +  
Sbjct: 10  ILKRFGDEQSTLLDQFERLAFEAQLSRAILGRSLSEPSSSRTQPPLLLLAP---PPGMAV 69

Query: 148 TNQPRKG-RCGSTFNFNNLLNNLLKPILERKGRAKKERPHFKNPMSWEALSKSMRL 203
             Q + G RCG+   F  +L +LLKPIL R+   +KE P  K+P  W++ S+SMR+
Sbjct: 70  APQAQPGRRCGAGLGFKKVLKSLLKPILRRRPGGRKEGPDPKDPRLWKSFSRSMRV 122

[Close]

BLAST of HG10020468 vs. ExPASy TrEMBL
Match: A0A7J9L7N1 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_004340 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-17
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 81  ALTEEMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQ 140
           ++ E   V+++FGDE S LLDQ+ERLSFE +LNQA+L RSLSEP + + +PQ  +    Q
Sbjct: 9   SMDEISVVLRRFGDEQSTLLDQFERLSFEVQLNQAILSRSLSEPSVAK-RPQ--YCSQFQ 68

Query: 141 LPYLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRA-KKERPHFKNPMSWEALSKS 200
            P       + RKGR GS   FN +L  LLKPIL RKG A KK     +NPMSW+A S+S
Sbjct: 69  AP-PPAVKPKGRKGRRGS--GFNRVLKKLLKPILGRKGNAGKKPVADPQNPMSWKAFSRS 125

Query: 201 MRL 203
           +RL
Sbjct: 129 LRL 125

[Close]

BLAST of HG10020468 vs. ExPASy TrEMBL
Match: A0A7J8LUW0 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_026225 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-17
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 81  ALTEEMAVIKKFGDEHSNLLDQYERLSFEARLNQAMLERSLSEPRMLRSQPQVLFAGSVQ 140
           ++ E   V+++FGDE S LLDQ+ERLSFE +LNQA+L RSLSEP + + +PQ  +    Q
Sbjct: 9   SMDEISVVLRRFGDEQSTLLDQFERLSFEVQLNQAILSRSLSEPSVAK-RPQ--YCSQFQ 68

Query: 141 LPYLITTTNQPRKGRCGSTFNFNNLLNNLLKPILERKGRA-KKERPHFKNPMSWEALSKS 200
            P       + RKGR GS   FN +L  LLKPIL RKG A KK     +NPMSW+A S+S
Sbjct: 69  AP-PPAVKPKGRKGRRGS--GFNRVLKKLLKPILGRKGNAGKKPVADPQNPMSWKAFSRS 125

Query: 201 MRL 203
           +RL
Sbjct: 129 LRL 125

The following BLAST results are available for this feature:

BLAST of HG10020468 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580428.1	3.3e-37	73.39	hypothetical protein SDJN03_20430, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OAY41638.1	3.1e-19	55.00	hypothetical protein MANES_09G117900v8 [Manihot esculenta]	[more]
OIW00914.1	1.3e-17	49.57	hypothetical protein TanjilG_06294 [Lupinus angustifolius]	[more]
PSS34765.1	5.0e-17	46.55	Protein Wnt-3a like [Actinidia chinensis var. chinensis]	[more]
MBA0556092.1	6.6e-17	51.22	hypothetical protein [Gossypium lobatum] >MBA0854738.1 hypothetical protein [Gos...	[more]

BLAST of HG10020468 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2C9VA13	1.5e-19	55.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G117900 PE=4 SV=...	[more]
A0A1J7H346	6.4e-18	49.57	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06294 PE=4 S...	[more]
A0A2R6RXK4	2.4e-17	46.55	Protein Wnt-3a like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
A0A7J9L7N1	3.2e-17	51.22	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_004340 PE=4...	[more]
A0A7J8LUW0	3.2e-17	51.22	Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_026225 PE=4 SV=1	[more]

BLAST of HG10020468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR48196	FAMILY NOT NAMED	coord: 83..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020468.1	HG10020468.1	mRNA