HG10020358 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020358
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Copper transporter
Location	Chr04: 31169728 .. 31169922 (-)
RNA-Seq Expression	HG10020358
Synteny	HG10020358

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAAACGCCGAGAATGTGTGGACGGTGGTGCTGCAGACGGCGATACATGCAGTCCGTACGGGTTTAAGTTACATGGTGATGCTAGCCGTGATGTCGTTCAACGGCGGAATCTTCCTGGCTGCGGTGGGCGGCCATGCTGTGGGCTTTGTTCTGTTCAAAAGGCGAGGCGAAACAAAGATGGTCCAATAA

mRNA sequence

ATGAAGCAAAACGCCGAGAATGTGTGGACGGTGGTGCTGCAGACGGCGATACATGCAGTCCGTACGGGTTTAAGTTACATGGTGATGCTAGCCGTGATGTCGTTCAACGGCGGAATCTTCCTGGCTGCGGTGGGCGGCCATGCTGTGGGCTTTGTTCTGTTCAAAAGGCGAGGCGAAACAAAGATGGTCCAATAA

Coding sequence (CDS)

ATGAAGCAAAACGCCGAGAATGTGTGGACGGTGGTGCTGCAGACGGCGATACATGCAGTCCGTACGGGTTTAAGTTACATGGTGATGCTAGCCGTGATGTCGTTCAACGGCGGAATCTTCCTGGCTGCGGTGGGCGGCCATGCTGTGGGCTTTGTTCTGTTCAAAAGGCGAGGCGAAACAAAGATGGTCCAATAA

Protein sequence

MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGETKMVQ

Homology

[Close]

BLAST of HG10020358 vs. NCBI nr
Match: KAA0044132.1 (copper transporter 4 [Cucumis melo var. makuwa] >TYK25006.1 copper transporter 4 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQN E+VW VV QTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFK+RGE 
Sbjct: 75  MKQNGESVWKVVGQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKKRGER 134

Query: 61  KMV 64
           K V
Sbjct: 135 KDV 137

[Close]

BLAST of HG10020358 vs. NCBI nr
Match: XP_004137921.2 (copper transporter 4 [Cucumis sativus] >KGN58819.1 hypothetical protein Csa_001531 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQN E+V  VV+QTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGE 
Sbjct: 75  MKQNGESVGKVVVQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGER 134

Query: 61  KMV 64
           K V
Sbjct: 135 KDV 137

[Close]

BLAST of HG10020358 vs. NCBI nr
Match: XP_022971334.1 (copper transporter 6-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQ+A+NV TVVLQ+AIHAVRTGL YMVML+VMSFNGGIFLAAVGGHAVGFVLF+ R E 
Sbjct: 162 MKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRGRAER 221

Query: 61  K 62
           K
Sbjct: 222 K 222

[Close]

BLAST of HG10020358 vs. NCBI nr
Match: XP_023540707.1 (copper transporter 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQ+A+NV TVVLQTAIHAVRTGL+YMV+L+VMSFNGGIFLAAVGGHAVGFVLF+ R + 
Sbjct: 83  MKQSADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARVKR 142

Query: 61  K 62
           K
Sbjct: 143 K 143

[Close]

BLAST of HG10020358 vs. NCBI nr
Match: XP_022941866.1 (copper transporter 4-like [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MK++A+NV TVVLQTAIHAVRTGL+YMV+L+VMSFNGGIFLAAVGGHAVGFVLF+ R + 
Sbjct: 83  MKESADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKR 142

Query: 61  K 62
           K
Sbjct: 143 K 143

[Close]

BLAST of HG10020358 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-10
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRR 58
           +KQ A+ +  V  +TA++ V++G SY+V+LAV+SFNGG+FLAA+ GHA+GF +F+ R
Sbjct: 81  IKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGR 137

[Close]

BLAST of HG10020358 vs. ExPASy Swiss-Prot
Match: Q60EN8 (Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 13  LQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFK 56
           L+TA+HAVR G++Y++MLA+MSFNGG+FLA V GHA GF+ F+
Sbjct: 86  LRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFR 128

[Close]

BLAST of HG10020358 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-09
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 12  VLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLF 55
           ++QTA++ +R GL+Y+VMLAVMSFN G+FL A+ GHAVGF+LF
Sbjct: 104 LIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLF 146

[Close]

BLAST of HG10020358 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-09
Identity = 27/43 (62.79%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 12  VLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLF 55
           ++QTA++ ++TGL+Y+VMLAVMSFNGG+F+ A+ G AVGF+LF
Sbjct: 85  LVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLF 127

[Close]

BLAST of HG10020358 vs. ExPASy Swiss-Prot
Match: Q9FGU8 (Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-09
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRR 58
           MK    ++   +LQTA++ VR  LSY+VMLAVMSFNGG+F+AA+ G  +GF++F  R
Sbjct: 78  MKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSR 134

[Close]

BLAST of HG10020358 vs. ExPASy TrEMBL
Match: A0A5A7TLC7 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001240 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQN E+VW VV QTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFK+RGE 
Sbjct: 75  MKQNGESVWKVVGQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKKRGER 134

Query: 61  KMV 64
           K V
Sbjct: 135 KDV 137

[Close]

BLAST of HG10020358 vs. ExPASy TrEMBL
Match: A0A0A0LD01 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQN E+V  VV+QTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGE 
Sbjct: 75  MKQNGESVGKVVVQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGER 134

Query: 61  KMV 64
           K V
Sbjct: 135 KDV 137

[Close]

BLAST of HG10020358 vs. ExPASy TrEMBL
Match: A0A6J1I894 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-18
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQ+A+NV TVVLQ+AIHAVRTGL YMVML+VMSFNGGIFLAAVGGHAVGFVLF+ R E 
Sbjct: 162 MKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRGRAER 221

Query: 61  K 62
           K
Sbjct: 222 K 222

[Close]

BLAST of HG10020358 vs. ExPASy TrEMBL
Match: A0A6J1FMA0 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MK++A+NV TVVLQTAIHAVRTGL+YMV+L+VMSFNGGIFLAAVGGHAVGFVLF+ R + 
Sbjct: 83  MKESADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKR 142

Query: 61  K 62
           K
Sbjct: 143 K 143

[Close]

BLAST of HG10020358 vs. ExPASy TrEMBL
Match: A0A6J1CV92 (Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRRGET 60
           MKQ+AE+V   VLQTAIHAVRTGLSYMVML+VMSFNGGIFLAAVGGHAVGFVLF+ R + 
Sbjct: 87  MKQSAESVSKAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKR 146

Query: 61  K 62
           K
Sbjct: 147 K 147

[Close]

BLAST of HG10020358 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 30/57 (52.63%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRR 58
           +KQ A+ +  V  +TA++ V++G SY+V+LAV+SFNGG+FLAA+ GHA+GF +F+ R
Sbjct: 81  IKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGR 137

[Close]

BLAST of HG10020358 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-10
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 12  VLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLF 55
           ++QTA++ +R GL+Y+VMLAVMSFN G+FL A+ GHAVGF+LF
Sbjct: 104 LIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLF 146

[Close]

BLAST of HG10020358 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 27/43 (62.79%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 12  VLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLF 55
           ++QTA++ ++TGL+Y+VMLAVMSFNGG+F+ A+ G AVGF+LF
Sbjct: 85  LVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLF 127

[Close]

BLAST of HG10020358 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-10
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1   MKQNAENVWTVVLQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLFKRR 58
           MK    ++   +LQTA++ VR  LSY+VMLAVMSFNGG+F+AA+ G  +GF++F  R
Sbjct: 78  MKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSR 134

[Close]

BLAST of HG10020358 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 14  QTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGGHAVGFVLF 55
           QTA++ ++TGLSY+VMLAVMSFN G+F+ A+ G+ VGF LF
Sbjct: 92  QTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLF 132

The following BLAST results are available for this feature:

BLAST of HG10020358 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044132.1	2.6e-20	88.89	copper transporter 4 [Cucumis melo var. makuwa] >TYK25006.1 copper transporter 4...	[more]
XP_004137921.2	1.0e-19	88.89	copper transporter 4 [Cucumis sativus] >KGN58819.1 hypothetical protein Csa_0015...	[more]
XP_022971334.1	1.2e-17	83.61	copper transporter 6-like [Cucurbita maxima]	[more]
XP_023540707.1	4.6e-17	81.97	copper transporter 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941866.1	4.6e-17	80.33	copper transporter 4-like [Cucurbita moschata]	[more]

BLAST of HG10020358 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8SAA5	2.6e-10	52.63	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]
Q60EN8	5.7e-10	65.12	Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1	[more]
Q39065	2.8e-09	65.12	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q8GWP3	3.7e-09	62.79	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q9FGU8	6.3e-09	52.63	Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1	[more]

BLAST of HG10020358 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLC7	1.3e-20	88.89	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A0A0LD01	4.8e-20	88.89	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1	[more]
A0A6J1I894	5.9e-18	83.61	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1	[more]
A0A6J1FMA0	2.2e-17	80.33	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1	[more]
A0A6J1CV92	5.0e-17	81.97	Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1	[more]

BLAST of HG10020358 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37925.1	1.8e-11	52.63	copper transporter 4	[more]
AT5G59030.1	2.0e-10	65.12	copper transporter 1	[more]
AT2G26975.1	2.6e-10	62.79	Ctr copper transporter family	[more]
AT5G59040.1	4.5e-10	52.63	copper transporter 3	[more]
AT3G46900.1	1.7e-09	63.41	copper transporter 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 7..54 e-value: 1.5E-13 score: 51.6
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 5..59
None	No IPR available	PANTHER	PTHR12483:SF94	COPPER TRANSPORTER 4	coord: 5..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020358.1	HG10020358.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity