HG10020297 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020297
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Location	Chr04: 30653993 .. 30654376 (-)
RNA-Seq Expression	HG10020297
Synteny	HG10020297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATTTGTGA

mRNA sequence

ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATTTGTGA

Coding sequence (CDS)

ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATTTGTGA

Protein sequence

MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRNDTDMCDL

Homology

[Close]

BLAST of HG10020297 vs. NCBI nr
Match: XP_023528596.1 (uncharacterized protein LOC111791469 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHFQDITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDTSRN
Sbjct: 61  SNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. NCBI nr
Match: XP_023528595.1 (uncharacterized protein LOC111791469 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHFQDITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDTSRN
Sbjct: 61  SNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. NCBI nr
Match: XP_023528597.1 (uncharacterized protein LOC111791469 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHFQDITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDTSRN
Sbjct: 61  SNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. NCBI nr
Match: XP_038904568.1 (uncharacterized protein LOC120090939 isoform X2 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPV+SPKGNHF DITSQPEEL NTNQ+ERG+LTSACSGNSSSEDISSD +RCQNDTSRN
Sbjct: 61  SNPVVSPKGNHFHDITSQPEELANTNQIERGDLTSACSGNSSSEDISSDAIRCQNDTSRN 120

Query: 121 DTDMCDL 128
           DT MCD+
Sbjct: 121 DT-MCDV 126

[Close]

BLAST of HG10020297 vs. NCBI nr
Match: XP_038904567.1 (uncharacterized protein LOC120090939 isoform X1 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPV+SPKGNHF DITSQPEEL NTNQ+ERG+LTSACSGNSSSEDISSD +RCQNDTSRN
Sbjct: 61  SNPVVSPKGNHFHDITSQPEELANTNQIERGDLTSACSGNSSSEDISSDAIRCQNDTSRN 120

Query: 121 DTDMCDL 128
           DT MCD+
Sbjct: 121 DT-MCDV 126

[Close]

BLAST of HG10020297 vs. ExPASy TrEMBL
Match: A0A6J1F8N9 (uncharacterized protein LOC111441847 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441847 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHF DITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDT RN
Sbjct: 61  SNPVISPKGNHFHDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTPRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. ExPASy TrEMBL
Match: A0A6J1F3R2 (uncharacterized protein LOC111441847 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441847 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHF DITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDT RN
Sbjct: 61  SNPVISPKGNHFHDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTPRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. ExPASy TrEMBL
Match: A0A6J1F8L3 (uncharacterized protein LOC111441847 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441847 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGNHF DITSQPEE ENTNQVERG+LTSACSGNSSSEDISS+GVRCQNDT RN
Sbjct: 61  SNPVISPKGNHFHDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTPRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. ExPASy TrEMBL
Match: A0A6J1CWQ1 (uncharacterized protein LOC111014996 OS=Momordica charantia OX=3673 GN=LOC111014996 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.4e-55
Identity = 119/128 (92.97%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAAGLAAVTNEPLGKESASSTELKRDHQCL EDTEPESLHNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLAEDTEPESLHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDIT-SQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSR 120
           SNPVISPKGNHFQDIT SQP+ELENTNQVERG+LTSACSGNSSSEDISSDGV C+N+TSR
Sbjct: 61  SNPVISPKGNHFQDITSSQPDELENTNQVERGDLTSACSGNSSSEDISSDGVPCRNNTSR 120

Query: 121 NDTDMCDL 128
           ND DMCD+
Sbjct: 121 NDADMCDV 128

[Close]

BLAST of HG10020297 vs. ExPASy TrEMBL
Match: A0A6J1J5N7 (uncharacterized protein LOC111481523 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481523 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.0e-55
Identity = 116/127 (91.34%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEV 60
           MGEEAA LAAVTNEPLGKESA STELKRDHQCLDEDTEPE+ HNKKQAKEVSNEDVRSEV
Sbjct: 1   MGEEAAALAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEV 60

Query: 61  SNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRN 120
           SNPVISPKGN+FQDITSQPEE +NTNQVERG+LTSACSGNSSSEDISS+GVRCQNDTSRN
Sbjct: 61  SNPVISPKGNNFQDITSQPEEQKNTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRN 120

Query: 121 DTDMCDL 128
           D DMCD+
Sbjct: 121 DVDMCDV 127

[Close]

BLAST of HG10020297 vs. TAIR 10
Match: AT3G53680.1 (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain )

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 18  KESASSTELKRDHQCLDEDT-EPESLH--NKKQAKEVSNEDVRSEVSNPVISP---KGNH 77
           + S +  +LKRD  C ++D  + E L+  NK+Q KE SN+D++SE+SNPV SP     + 
Sbjct: 11  ENSETKKDLKRDRLCFEQDNLDEEELYSSNKRQTKEPSNDDMKSEISNPVPSPVVDNASS 70

Query: 78  FQDITSQPEELENTNQVERGELTSACSGN 101
           F+DITS P +  +      G+   +CSG+
Sbjct: 71  FRDITSNPAKSSS------GDRVGSCSGS 93

[Close]

BLAST of HG10020297 vs. TAIR 10
Match: AT2G37520.1 (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain )

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-05
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 25  ELKRDHQCLDEDTEP----ESLHNKKQAKEVSNEDVRSEVSNPVISP--KGNHFQDITSQ 84
           +LKRD   LD+DT+     +   +KKQAKE SN+D+ SE+SNPV SP    + F+D++SQ
Sbjct: 17  QLKRDR--LDDDTDEGNKGDHFPSKKQAKEASNDDITSEISNPVASPVESTSLFRDVSSQ 76

Query: 85  PEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRNDTDM 125
           P        V+ G +  + S   S E +S D     +  +   +D+
Sbjct: 77  P--------VKSGLVECSGSDFGSEETVSDDASVVGSSQTEQSSDV 112

The following BLAST results are available for this feature:

BLAST of HG10020297 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528596.1	1.5e-56	93.70	uncharacterized protein LOC111791469 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023528595.1	1.5e-56	93.70	uncharacterized protein LOC111791469 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023528597.1	1.5e-56	93.70	uncharacterized protein LOC111791469 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_038904568.1	1.3e-55	92.91	uncharacterized protein LOC120090939 isoform X2 [Benincasa hispida]	[more]
XP_038904567.1	1.3e-55	92.91	uncharacterized protein LOC120090939 isoform X1 [Benincasa hispida]	[more]

BLAST of HG10020297 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8N9	1.1e-55	92.13	uncharacterized protein LOC111441847 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F3R2	1.1e-55	92.13	uncharacterized protein LOC111441847 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F8L3	1.1e-55	92.13	uncharacterized protein LOC111441847 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CWQ1	5.4e-55	92.97	uncharacterized protein LOC111014996 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1J5N7	7.0e-55	91.34	uncharacterized protein LOC111481523 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10020297 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53680.1	3.2e-07	39.33	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain	[more]
AT2G37520.1	8.6e-05	35.85	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020297.1	HG10020297.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding