HG10020281 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10020281
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSCP domain-containing protein
LocationChr04: 30516541 .. 30516819 (-)
RNA-Seq ExpressionHG10020281
SyntenyHG10020281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA

mRNA sequence

ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA

Coding sequence (CDS)

ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA

Protein sequence

MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTTNSIGFSSSTVTWDRNLTRFARRWGEKRAADCK
Homology
BLAST of HG10020281 vs. NCBI nr
Match: KAA0044057.1 (pathogenesis-related protein 1C-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 1  MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
          MS PY+ SA  + S  L+LHLA AGVQ Q P  SA +     T    A P R N+ +   
Sbjct: 1  MSLPYITSAAFSFSFLLILHLAVAGVQPQSPPTSASKNSMTAT---TAPPRRRNYIREFL 60

Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
           +       F    +TWD+NLTR+A RWGEKRA DC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDKNLTRYAWRWGEKRAEDCR 94

BLAST of HG10020281 vs. ExPASy TrEMBL
Match: A0A0A0LDA7 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736570 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 1  MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
          MS PY+ S  AA S  LLLHLA AGVQ Q P  S   T +   P   A P R ++ +   
Sbjct: 1  MSLPYIIS--AAFSFLLLLHLAVAGVQPQSPPTS---TSKNSMPATTASPRRRSYIREFL 60

Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
           +       F    +TWDRNLTRFARRWGE+RAADC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDRNLTRFARRWGEQRAADCR 92

BLAST of HG10020281 vs. ExPASy TrEMBL
Match: A0A5A7TQF4 (Pathogenesis-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004050 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 1  MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
          MS PY+ SA  + S  L+LHLA AGVQ Q P  SA +     T    A P R N+ +   
Sbjct: 1  MSLPYITSAAFSFSFLLILHLAVAGVQPQSPPTSASKNSMTAT---TAPPRRRNYIREFL 60

Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
           +       F    +TWD+NLTR+A RWGEKRA DC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDKNLTRYAWRWGEKRAEDCR 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044057.16.7e-0944.33pathogenesis-related protein 1C-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDA71.3e-1048.45SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736570 PE=4 SV... [more]
A0A5A7TQF43.2e-0944.33Pathogenesis-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10020281.1HG10020281.1mRNA