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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA mRNA sequence ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA Coding sequence (CDS) ATGTCGCCGCCCTACATGTTCTCCGCCGTCGCCGCCCTCTCCCTCTTCCTCCTTCTCCATCTCGCCGCCGCCGGCGTCCAACAACAGCCTCCGCTCGCCTCCGCTCCACAAACGCGACGACTCCAGACGCCCGTCCTCGACGCCGATCCTACACGCGCGAATTTCTTCAAGCGCACAACAAATTCGATCGGCTTTTCAAGTTCCACCGTAACGTGGGACAGGAATCTCACTCGATTCGCGCGGCGGTGGGGCGAGAAACGCGCCGCGGATTGTAAATGA Protein sequence MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTTNSIGFSSSTVTWDRNLTRFARRWGEKRAADCK
Homology
BLAST of HG10020281 vs. NCBI nr
Match: KAA0044057.1 (pathogenesis-related protein 1C-like [Cucumis melo var. makuwa]) HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09 Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0
Query: 1 MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
MS PY+ SA + S L+LHLA AGVQ Q P SA + T A P R N+ +
Sbjct: 1 MSLPYITSAAFSFSFLLILHLAVAGVQPQSPPTSASKNSMTAT---TAPPRRRNYIREFL 60
Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
+ F +TWD+NLTR+A RWGEKRA DC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDKNLTRYAWRWGEKRAEDCR 94
BLAST of HG10020281 vs. ExPASy TrEMBL
Match: A0A0A0LDA7 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736570 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10 Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 0
Query: 1 MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
MS PY+ S AA S LLLHLA AGVQ Q P S T + P A P R ++ +
Sbjct: 1 MSLPYIIS--AAFSFLLLLHLAVAGVQPQSPPTS---TSKNSMPATTASPRRRSYIREFL 60
Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
+ F +TWDRNLTRFARRWGE+RAADC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDRNLTRFARRWGEQRAADCR 92
BLAST of HG10020281 vs. ExPASy TrEMBL
Match: A0A5A7TQF4 (Pathogenesis-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004050 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09 Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0
Query: 1 MSPPYMFSAVAALSLFLLLHLAAAGVQQQPPLASAPQTRRLQTPVLDADPTRANFFKRTT 60
MS PY+ SA + S L+LHLA AGVQ Q P SA + T A P R N+ +
Sbjct: 1 MSLPYITSAAFSFSFLLILHLAVAGVQPQSPPTSASKNSMTAT---TAPPRRRNYIREFL 60
Query: 61 NS-----IGFSSSTVTWDRNLTRFARRWGEKRAADCK 93
+ F +TWD+NLTR+A RWGEKRA DC+
Sbjct: 61 QAHNKFRSAFHIQPLTWDKNLTRYAWRWGEKRAEDCR 94
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0044057.1 | 6.7e-09 | 44.33 | pathogenesis-related protein 1C-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LDA7 | 1.3e-10 | 48.45 | SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736570 PE=4 SV... | [more] |
| A0A5A7TQF4 | 3.2e-09 | 44.33 | Pathogenesis-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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