HG10020259 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020259
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNase H domain-containing protein
Location	Chr04: 30316096 .. 30316392 (-)
RNA-Seq Expression	HG10020259
Synteny	HG10020259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATATGAAGAGTTTTTCTCATATCCCTAGATTACGTAACAATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAG

mRNA sequence

ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATATGAAGAGTTTTTCTCATATCCCTAGATTACGTAACAATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAG

Coding sequence (CDS)

ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATATGAAGAGTTTTTCTCATATCCCTAGATTACGTAACAATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAG

Protein sequence

MEGETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMKSFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPPK

Homology

[Close]

BLAST of HG10020259 vs. NCBI nr
Match: TXG73320.1 (hypothetical protein EZV62_001899 [Acer yangbiense])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 4   ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMK 63
           E + +L G+ L    C+  + VE D + +VN+I  D    S + +I+ +I++ M ++ ++
Sbjct: 173 EAIGILHGINLAMETCLLPLVVESDAQHVVNLINSDISVSSDIGLIIYDIRDCMRRVGIE 232

Query: 64  SFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP 98
           S S +P   N VAH L K+A  N GS  W  S P
Sbjct: 233 SISFVPMTTNVVAHNLAKYALLNIGSQLWLESYP 266

[Close]

BLAST of HG10020259 vs. ExPASy TrEMBL
Match: A0A5C7IVJ7 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001899 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 4   ETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKVILCEIKNQMLKINMK 63
           E + +L G+ L    C+  + VE D + +VN+I  D    S + +I+ +I++ M ++ ++
Sbjct: 173 EAIGILHGINLAMETCLLPLVVESDAQHVVNLINSDISVSSDIGLIIYDIRDCMRRVGIE 232

Query: 64  SFSHIPRLRNNVAHELFKWAWDNEGSGEWYVSPP 98
           S S +P   N VAH L K+A  N GS  W  S P
Sbjct: 233 SISFVPMTTNVVAHNLAKYALLNIGSQLWLESYP 266

The following BLAST results are available for this feature:

BLAST of HG10020259 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG73320.1	2.1e-05	34.04	hypothetical protein EZV62_001899 [Acer yangbiense]	[more]

BLAST of HG10020259 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IVJ7	1.0e-05	34.04	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001899 ...	[more]

BLAST of HG10020259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..86 e-value: 2.5E-8 score: 36.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..83 e-value: 1.2E-13 score: 51.0
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..79 e-value: 5.40465E-11 score: 52.7016
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020259.1	HG10020259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity