HG10020153 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020153
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TRASH domain-containing protein
Location	Chr04: 29327206 .. 29328384 (-)
RNA-Seq Expression	HG10020153
Synteny	HG10020153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCAAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGGTAAGGGCGTAAAGTTGTTTTTCTTATTGTGATGGTTGTGAACTTTCAATACCTTTTTTGGACGTTTGGTTAAGATCTAATGTAGTAATGAACGTTGCGAACTTTCATGTTTTGTGTGTCTTGTTCTACTCGTTCCTTGTATGTATTTGCTTGCGGTATGCCTCTTTTAGCTGTCAATCTACCTGTTCTATCTTGATTATTGATCTGTTTGTGATTTGTTGTTTGCTATGCATATTAAGGCCGTAGAAATAGATAATTGTTCTCTTTTGGCTTTTAAATTAGTGATAGTGGGGAAAACCGCATGATTCTATTCCCTAATATGATTTTTGTGCAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGAGGGTTGCATGGAAAGGATATTACACAGGTAAACTTAATTTATTTGTGGAGCAAATGGGATTTTGTAAGTACAAAATTTCTTTGTCCCACTTGGATACTACATAGGTAGTATGGACTACCTTTGTCCCATATCGGTTAGAATGAGATAGCCAATGTGGTACTTAAGTGACGCTTGGCTCTCCCACCTCCATAGCTGGCTTTTGGGGTGTGGTTCTCTAAGGTGTTTAAGTATCTAATAGTCTCCTCCTGAATTGTTGTGTCATCTGTATAATCCAGGACTCGACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATTGATAAAGTCAGAGTGGTTAGGGAGTCAAGGCACATTGCACGGAGGTTTTAAATTTCCTCCATTCCCATTTGTTTTATGCCTATGTATATTGTGAATACTGCTTCAGGTGTAACTCGGGTTCGTTACATTTGTAGAATGCATGGAAAGAAAGCAAAGGAGCTCGTAGAGAAACGGAAGGAATTGGATCAGAGCATCAGTTTGATCAAAGCACCTACTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGCAGAACAAAATCAGCCTATGGAAGAATGA

mRNA sequence

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCAAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGAGGGTTGCATGGAAAGGATATTACACAGGACTCGACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATTGATAAAGTCAGAGTGGTTAGGGAGTCAAGGCACATTGCACGGAGAATGCATGGAAAGAAAGCAAAGGAGCTCGTAGAGAAACGGAAGGAATTGGATCAGAGCATCAGTTTGATCAAAGCACCTACTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGCAGAACAAAATCAGCCTATGGAAGAATGA

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTATATATCAAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACTAAGGCATATAGAGGGTTGCATGGAAAGGATATTACACAGGACTCGACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACCGAAGAGACATTGAAGGCTATTAAGAAGATTGATAAAGTCAGAGTGGTTAGGGAGTCAAGGCACATTGCACGGAGAATGCATGGAAAGAAAGCAAAGGAGCTCGTAGAGAAACGGAAGGAATTGGATCAGAGCATCAGTTTGATCAAAGCACCTACTGTTCTCAAGGAGGATCCTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGCAGAACAAAATCAGCCTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHGKDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKELVEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE

Homology

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BLAST of HG10020153 vs. NCBI nr
Match: XP_022976358.1 (probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E +KELDQSISL+KAP  LKEDPSLTLPKIKV V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of HG10020153 vs. NCBI nr
Match: XP_038905540.1 (probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 153/168 (91.07%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 29  MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 88

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVR  RESRHIARR  GKKAKEL
Sbjct: 89  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 148

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E +KELDQSISL+KAP+ LKEDPSLTLPKIKVKVVPSQAEQNQ MEE
Sbjct: 149 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 196

[Close]

BLAST of HG10020153 vs. NCBI nr
Match: XP_038905541.1 (probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905542.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905544.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905545.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 153/168 (91.07%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVR  RESRHIARR  GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E +KELDQSISL+KAP+ LKEDPSLTLPKIKVKVVPSQAEQNQ MEE
Sbjct: 121 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 168

[Close]

BLAST of HG10020153 vs. NCBI nr
Match: XP_022135604.1 (probable ribosome biogenesis protein RLP24 [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYR L+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKELDQSISL+KAP+VLKEDPSLTLPKIKVKV  SQAEQNQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]

BLAST of HG10020153 vs. NCBI nr
Match: XP_022148700.1 (probable ribosome biogenesis protein RLP24 [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 151/168 (89.88%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR L+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKELDQSISL+KAP+VLKEDPSLTLPKIKVKV  SQAEQNQ ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

[Close]

BLAST of HG10020153 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-57
Identity = 113/168 (67.26%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+T+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R+   K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            +  KELDQ+I +++AP            KIKV V   ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

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BLAST of HG10020153 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-41
Identity = 78/142 (54.93%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MR+EKC+FCS  +Y GHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           K++T D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      RM G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 VEKRKELDQSISLIKAPTVLKE 143
            +K KE++Q++SLI+ P+ L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]

BLAST of HG10020153 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-39
Identity = 73/137 (53.28%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MR+EKC+FCS  IY GHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R   G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R+   K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 VEKRKELDQSISLIKAP 138
           V+  KE+ Q+I LI+AP
Sbjct: 121 VQDVKEVKQNIHLIRAP 137

[Close]

BLAST of HG10020153 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.9e-39
Identity = 73/137 (53.28%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MR+EKC+FCS  IY GHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R   G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R+   K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 VEKRKELDQSISLIKAP 138
           V+  KE+ Q+I LI+AP
Sbjct: 121 VQDIKEVKQNIHLIRAP 137

[Close]

BLAST of HG10020153 vs. ExPASy Swiss-Prot
Match: Q5RF04 (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-38
Identity = 72/137 (52.55%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MR+EKC+FCS  IY GHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R   G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R+   K  + 
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120

Query: 121 VEKRKELDQSISLIKAP 138
           V+  KE+ Q+I LI+AP
Sbjct: 121 VQDIKEVKQNIHLIRAP 137

[Close]

BLAST of HG10020153 vs. ExPASy TrEMBL
Match: A0A6J1ILW2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111476784 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E +KELDQSISL+KAP  LKEDPSLTLPKIKV V PSQAEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of HG10020153 vs. ExPASy TrEMBL
Match: A0A6J1C1W9 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111007521 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYR L+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKELDQSISL+KAP+VLKEDPSLTLPKIKVKV  SQAEQNQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]

BLAST of HG10020153 vs. ExPASy TrEMBL
Match: A0A6J1D3M8 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111017299 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 151/168 (89.88%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR L+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RESRHIARRM GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKELDQSISL+KAP+VLKEDPSLTLPKIKVKV  SQAEQNQ ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

[Close]

BLAST of HG10020153 vs. ExPASy TrEMBL
Match: A0A6J1KWV2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111498315 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.3e-76
Identity = 146/168 (86.90%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RE+RHIARRM GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKEL+QSIS++K P +LKEDPSLTLPKI+VKV  SQAE+NQPMEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]

BLAST of HG10020153 vs. ExPASy TrEMBL
Match: A0A6J1GEZ5 (probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC111453564 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.3e-76
Identity = 146/168 (86.90%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSST+Y GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR LHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+TQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVR  RE+RHIARRM GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            E RKEL+QSIS++K P +LKEDPSLTLPKI+VKV  SQAE+NQPMEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]

BLAST of HG10020153 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-58
Identity = 113/168 (67.26%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+T+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R+   K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            +  KELDQ+I +++AP            KIKV V   ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of HG10020153 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-58
Identity = 113/168 (67.26%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYQGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRGLHG 60
           MRLEKCWFCSSTIY GHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDITQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRVVRESRHIARRMHGKKAKEL 120
           KD+T+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R+   K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 VEKRKELDQSISLIKAPTVLKEDPSLTLPKIKVKVVPSQAEQNQPMEE 169
            +  KELDQ+I +++AP            KIKV V   ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

The following BLAST results are available for this feature:

BLAST of HG10020153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976358.1	1.2e-77	90.48	probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 pr...	[more]
XP_038905540.1	1.2e-77	91.07	probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]	[more]
XP_038905541.1	1.2e-77	91.07	probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_03...	[more]
XP_022135604.1	2.1e-77	90.48	probable ribosome biogenesis protein RLP24 [Momordica charantia]	[more]
XP_022148700.1	6.1e-77	89.88	probable ribosome biogenesis protein RLP24 [Momordica charantia]	[more]

BLAST of HG10020153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	1.5e-57	67.26	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q86B05	1.9e-41	54.93	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q3SZ12	5.3e-39	53.28	Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2...	[more]
Q9UHA3	6.9e-39	53.28	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]
Q5RF04	1.5e-38	52.55	Probable ribosome biogenesis protein RLP24 OS=Pongo abelii OX=9601 GN=RSL24D1 PE...	[more]

BLAST of HG10020153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILW2	6.0e-78	90.48	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1C1W9	1.0e-77	90.48	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1D3M8	3.0e-77	89.88	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1KWV2	3.3e-76	86.90	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GEZ5	3.3e-76	86.90	probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of HG10020153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	1.0e-58	67.26	Ribosomal protein L24e family protein	[more]
AT2G44860.2	1.0e-58	67.26	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 4.8E-11 score: 52.7
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 1..68 e-value: 1.8E-33 score: 116.4
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 2.9E-32 score: 110.7
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..168
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 1.94482E-29 score: 100.725
None	No IPR available	PANTHER	PTHR10792:SF36	BNAA04G10330D PROTEIN	coord: 1..168
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020153.1	HG10020153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus