HG10020129 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020129
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LITTLE ZIPPER 4
Location	Chr04: 29010838 .. 29011056 (-)
RNA-Seq Expression	HG10020129
Synteny	HG10020129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCTAAACTCAGAGCTGTATTTGCAAAACTGTTACATAATGAAGGAAAATGAAAGATTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAACTGA

mRNA sequence

ATGGAGAGGCTAAACTCAGAGCTGTATTTGCAAAACTGTTACATAATGAAGGAAAATGAAAGATTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAACTGA

Coding sequence (CDS)

ATGGAGAGGCTAAACTCAGAGCTGTATTTGCAAAACTGTTACATAATGAAGGAAAATGAAAGATTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAACTGA

Protein sequence

MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDLNLSSANPSNSSN

Homology

[Close]

BLAST of HG10020129 vs. NCBI nr
Match: XP_008442826.1 (PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_011652008.1 protein LITTLE ZIPPER 4 [Cucumis sativus] >XP_038905261.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905262.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905263.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >KGN59119.1 hypothetical protein Csa_001986 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. NCBI nr
Match: XP_022935644.1 (protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPPER 4 [Cucurbita maxima] >XP_023526116.1 protein LITTLE ZIPPER 4 [Cucurbita pepo subsp. pepo] >KAG7017444.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANA-SKSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NA SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 73
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of HG10020129 vs. NCBI nr
Match: XP_021639017.1 (protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639020.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSK NSKANA  SIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKANSKANAPNSIPDL 60

Query: 61 NLSSA---NPSNSS 72
          NLSS+   NP+NSS
Sbjct: 61 NLSSSSSHNPTNSS 74

[Close]

BLAST of HG10020129 vs. NCBI nr
Match: XP_007027705.2 (PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976700.1 PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976701.1 PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSK N++ +IPDL
Sbjct: 1  MERLNSNLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKGNSANTIPDL 60

Query: 61 NLSSA---NPSNSS 72
          NLSS+   NPSNSS
Sbjct: 61 NLSSSSNPNPSNSS 74

[Close]

BLAST of HG10020129 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-13
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLS--KGNSKANASKSIP 60
          MERLNS+LYLQNCYI+KENERLRKKAQ+LNQENQ LL ELKQKLS  K +S +N   +  
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 DLNLSSANPSN 70
          + NLSS++ ++
Sbjct: 61 NNNLSSSSSAS 71

[Close]

BLAST of HG10020129 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]

BLAST of HG10020129 vs. ExPASy TrEMBL
Match: A0A1S3B7E3 (protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. ExPASy TrEMBL
Match: A0A0A0LE03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. ExPASy TrEMBL
Match: A0A6J1J6J7 (protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. ExPASy TrEMBL
Match: A0A6J1F606 (protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 73
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

[Close]

BLAST of HG10020129 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANA-SKSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NA SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 73
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of HG10020129 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-13
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

[Close]

BLAST of HG10020129 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 44
           ME +N +LY++N  I++ENE+L+KKA LL+QEN+ L S L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of HG10020129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442826.1	3.6e-26	100.00	PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: pro...	[more]
XP_022935644.1	3.0e-25	97.22	protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPP...	[more]
XP_022144704.1	3.5e-21	88.16	protein LITTLE ZIPPER 4 [Momordica charantia]	[more]
XP_021639017.1	4.5e-21	87.84	protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein ...	[more]
XP_007027705.2	4.5e-21	86.49	PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976700.1 ...	[more]

BLAST of HG10020129 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WL5	1.2e-13	66.20	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1	[more]
Q9LXI8	1.8e-12	66.67	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1	[more]

BLAST of HG10020129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7E3	1.7e-26	100.00	protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1	[more]
A0A0A0LE03	1.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1	[more]
A0A6J1J6J7	1.5e-25	97.22	protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1	[more]
A0A6J1F606	1.5e-25	97.22	protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1	[more]
A0A6J1CT31	1.7e-21	88.16	protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1	[more]

BLAST of HG10020129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52770.1	1.3e-13	66.67	protein binding	[more]
AT2G45450.1	1.4e-04	53.49	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72
None	No IPR available	PANTHER	PTHR33601:SF1	PROTEIN LITTLE ZIPPER 4	coord: 1..71
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020129.1	HG10020129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane