HG10020093 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020093
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA binding protein, putative
Location	Chr04: 28719817 .. 28723156 (-)
RNA-Seq Expression	HG10020093
Synteny	HG10020093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATATCCTCCAATCGTTGTGTTCTTCCCTCAATATTTACTCTGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCATCGAAGCTTTTTGTTGGTGGTAAACTCAACGTTCCTGCTCTTTACTTATCTGTTCATTTTCCGATTCATTATATCTACTTACCGTTTCAGTCTACGTTTTGGAATCGAAATCACACTCTTTATTGCGATTTTTATATCTATGCTGATTAATTGTTCAACTGTTTCTGTGAATTGAGCTAACTGTGTATGTTTGAACTAAGGTCTTTGCAATGACCGTACGTTAAGTTTTGTGAAGTATAAACTTTGTTTTAATCTTACAAGTGAATGTACGACTGTGTGAATGCGAGCTTCTGTGTTAATTTACTTCAGGAAACCACGATCGTGGAAAATTCTGGAGAAAACTTCTTGTATTGATATTCATTTCAAAATTGATAACTGTTGTATATATTGTAAAGGATAAATATAGGCTTACTTTGTAATTAGTTTGTAAACGTCTCAATATTATTAGTTTGTAATTAATTATTTTTCTCATGTACTCTCTGCCTATATATAGGCTTACTTTCATTAATGAAATCATGGGAGTTTTATTTAGTCTCAAGCTTAATAGATGGATATGCATACTTTCTCCTAATGTTGATGTCAAAGATCAAAATGATGGATGGATATGAAAGGAATATACAGGATTTGTAAAATGTTTCAACCTTGATCTTAGGTCGCACTTACTTATGGAGAGACAGAAAATAGCACAAAGCGTCTCCCGCCAAGGGAGACACCAGGAAAAGGAAAAAACAGATCTAGGAAAACTTGGACTCTAGTAAGATTTCATTAGCTAAATTAGGAGTCTTGATGTCAGGAAGCACCAAGTCAACTTTGAGAGATCTTCCTCTGCACCACTCAACACATTTATTTTTTCCAGTACACATTGCCTAAATATGGTCAAGTTCCTAAGCCCCAAGCCCATTAGCATAATGTAATATAAACCTCCTGAGTAGCTTCATCACCCACTAAGAGTGCAGTGTAGCATGTCTTCAATGCTTTTACTTGAACCGTTACTTCCTGACCATCTTTATCTTTATCATGATTCGTCACTTGCTATAATCCACACAGCATCCACGATCATTTTAAAGCTATCTACCCTAGCCTTGGAGAAATTGGATATGAAGGCGGTTTTCATTACTTCTAGTGCCTTCTCTTGAAATACTTTGGAGGTTGTTCAAATATGTTTAGGCACGCCGCCCACCTACAAATTATATAATTATAAAAAATATATATCAAAGTAATGTGGTTGATGTATCTTCTCATCCTGTAATGGTAGTCCCCTTTGATCTTAGGACAAGTTCTTTGACTTCGAATTTGTGTTTAGGTGGGGTTTTCCACAACCTTACACGAACAAGATCGGTTCCTTAGGCTGAACAACTGTGTCTGTGAGTTCTACTTCTAAGGTGGGGTTGCGGAAGGGAATGGGCTTCTTGAGCGGGTTTTGAAGGAATGGTCTTGCCTTGATGTCTTCCTAGTGAATCTTGGCTTGTGCTTCGGCCCTAAAGAATCTGGGTAACATAATGAATGTTAGGGAAGTGGGTGGAGGGAGTTGAGAGAGGAGGCATTACTTGGAAGAGAGAAATAATCAAGGAATTCTACGATAGTAAACTTGGATTTTTCTGGTTCTTGTTGTCTAAGAGGGGTTCTAAGGATGTTGAGGGTCATAGAAATTTCCCCACTAATGATACCTCTTTTGAGTTTGCTATAATTTCTTCATAAACTACCATGGTTTGTTTCCTTCTTCCATGAGCCTGAACTCCCTAAATCTTTCTGCAATTGTATTGGAAGACCTACTTTGGTTGCCATTGCTCATTGTACTTGATCACTAAAACTGACCATAAATCATCCGAAAGAGCTATATAGGTAGAAGCTCAGAAGAAAACCAATAGAGATCTAGAGTGCATATGCAGCTTTAGCTTTACAAATCTAGGATGCTTAAGATTCTTCAGCTTAACCTTGATTGTGATAATTGATAGTGTGTGTGTGTGTTTGAGGAAAATTGATGAGGAGAATGTTAGGAACCAAGGTAGTACGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGGTTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAATGGTATCAGAGCCGGTTGTTAACGTTCCGGAGTGGAACCGGCGGAGGGTTCTGACCGGGTATGGCCGAGTGAAGTACCGTCGGAGTAGCCATCAGGACGTCGGCTTTCCGGGGATGGGGTATTGTTAGGAACCAAGGTTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACTAATGTGGTACTTAAGTGGCTTGGCCCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAGAGAATTAGGATAATTACACATTTTAGTTAATATTTAGTTTAGTTGTTAATTTAGATTAATTAATACAAGAAAATAAGACAATTAATTCTCCTCGTCAAAACTTTTAGTGTGTTATTGTTCTGGCAGACTGCCACATCGACTTGTTCTGTAACAGGATTTGTGGAGTTTGAGGAAATGAGCCAATATTTATCCCTATTTCATTGTTAACCTTTGATCTCAAGTTTCTTTACCTTTCTGGAAGAGATTCTTACATGTCACATTGATTAATAGAATTGTTTACTATGCTTGAAAAAGAACAGAATCATTTGTCTATGGAAATTTGCGAGATTTTTGCTCTTGATTTTACCAGTCAATTCATATGACAATACCTTATTCCATATTGAAATCTTCTCTGGAATATTTTGCAACAGGACTCTCATTTTACACTACGGACAAGGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTGTTGAAGGTGACTTCCATTGAGATCTTTTAGCTTTTATGTCTATGGTCTAACCATGCAAATTTACTTTCATGGGGCATAACACAATTTTCTCAACTCCAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACAGAGATGAACGGAAAGGTCTGCACTTTCCTCTGTCGTTACTTTTACATCTTAGAAATTAAGTCTAATGGTTATTTGCTGCAGCCTTTGAACGGAAGGGTTATTTTTGTGGAATATGCAAAGCCAACATCCAAATCTCGTGGTGGAATTCCTATAGCGAGAGGACCTCCTGAGGAGAGAACTGATGAATGA

mRNA sequence

ATGGCAATATCCTCCAATCGTTGTGTTCTTCCCTCAATATTTACTCTGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCATCGAAGCTTTTTGTTGGTGGACTCTCATTTTACACTACGGACAAGGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGGAATATGCAAAGCCAACATCCAAATCTCGTGGTGGAATTCCTATAGCGAGAGGACCTCCTGAGGAGAGAACTGATGAATGA

Coding sequence (CDS)

ATGGCAATATCCTCCAATCGTTGTGTTCTTCCCTCAATATTTACTCTGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCATCGAAGCTTTTTGTTGGTGGACTCTCATTTTACACTACGGACAAGGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTCGTCACCTTTGCATCCGAAGACGAAGCTCATACAGCACTGACAGAGATGAACGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGGAATATGCAAAGCCAACATCCAAATCTCGTGGTGGAATTCCTATAGCGAGAGGACCTCCTGAGGAGAGAACTGATGAATGA

Protein sequence

MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGPPEERTDE

Homology

[Close]

BLAST of HG10020093 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 6.1e-61
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MAISSNRCVLPS+FTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAISSNRCVLPSLFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFV+YAKPTSK R GIPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSKFRSGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MAISSNRCVLPS+FT PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFV+YAKPTS  RGGIPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MAISS+R VL S+F  PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
            DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFV+YAKPT+  RGGIPIARGP
Sbjct: 68  TDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MA+SS+R VL S+F  PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
            DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFV+YAKPT+  RGGIPIARGP
Sbjct: 68  TDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. NCBI nr
Match: KAG6596588.1 (Small RNA-binding protein 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 110/127 (86.61%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MA+SS+R VL S+F  PSRL+SFRGIASKLFVGGLSFYT+DKGL+EAFSQYGQVVEAKVV
Sbjct: 1   MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVV 60

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFAS+DEAHTALTEMNGK LNGRVIFV+YAKPT+  RGGIPIARGP
Sbjct: 61  MDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 120

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 121 PEEKTDE 127

[Close]

BLAST of HG10020093 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-33
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 24  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 83
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 84  TALTEMNGKPLNGRVIFVEYAKPTSK--SRGGIPIARGPPE 123
            AL E NG+ LNGR IFV+YAK        GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of HG10020093 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-19
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 18  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 77
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 78  SEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKS 111
            ED A+ A+ EM+GK LNGR I V  A   S +
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of HG10020093 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.6e-18
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 29  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 88
           KLFVGGL+F TT++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 89  MNGKPLNGRVIFVEYAKPTSKSRGG 114
           MNGK ++GR I V+ A  +S  R G
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRG 91

[Close]

BLAST of HG10020093 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-17
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 29  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 88
           KLF+ GLSFYT++K L  AF  +G++VE K++MD++S +SKG+ F+ + +E+ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 89  MNGKPLNGRVIFVEYAK 106
           MNGK +NG +I V+ AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359

[Close]

BLAST of HG10020093 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 27  ASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTAL 86
           ++ LFV GLS  TT +GL  AF+Q+G+V +AKVV DRVS  SKGFGFV +A+ +++   +
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 87  TEMNGKPLNGRVIFVEYAKPTSKSRGGIP 116
             M+GK L+G VIF EYA+P  +S+   P
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQP 143

[Close]

BLAST of HG10020093 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MAISSNRCVLPS+FT PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFV+YAKPTS  RGGIPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MA+SS+R VL S+F  PSRL+SFRGIASKLFVGGLSFYT+DKGLSEAFSQYGQVVEAKVV
Sbjct: 8   MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQVVEAKVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
            DRVSDKSKGFGFVTFASEDEAHTALTEMNGK LNGRVIFV+YAKPT+  RGGIPIARGP
Sbjct: 68  TDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TDE
Sbjct: 128 PEEKTDE 134

[Close]

BLAST of HG10020093 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.8e-54
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           MAI+SNR VLPS+F  PSRLVS+RGIA+KLFVGGLS+YTTDKGLSEAFSQYGQV+EA VV
Sbjct: 8   MAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV YAKPT+ SRG IPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGAIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TD+
Sbjct: 128 PEEKTDK 134

[Close]

BLAST of HG10020093 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           +AISSNR VLPS+F  PSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQV+EA VV
Sbjct: 8   IAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV YAKPT+ +RG IPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TD+
Sbjct: 128 PEEKTDK 134

[Close]

BLAST of HG10020093 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MAISSNRCVLPSIFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVV 60
           +AISSNR VLPS+F  PSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQV+EA VV
Sbjct: 8   IAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVV 67

Query: 61  MDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKSRGGIPIARGP 120
           MDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV YAKPT+ +RG IPIARGP
Sbjct: 68  MDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARGP 127

Query: 121 PEERTDE 128
           PEE+TD+
Sbjct: 128 PEEKTDK 134

[Close]

BLAST of HG10020093 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-34
Identity = 72/101 (71.29%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 24  RGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAH 83
           RG+ASKLF+GGLSF TT++GLSEAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 84  TALTEMNGKPLNGRVIFVEYAKPTSK--SRGGIPIARGPPE 123
            AL E NG+ LNGR IFV+YAK        GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of HG10020093 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 18  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 77
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 78  SEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKS 111
            ED A+ A+ EM+GK LNGR I V  A   S +
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of HG10020093 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 18  SRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 77
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 78  SEDEAHTALTEMNGKPLNGRVIFVEYAKPTSKS 111
            ED A+ A+ EM+GK LNGR I V  A   S +
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of HG10020093 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 26  IASKLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTA 85
           I+++LFV  LS YTTD+ L + FS +GQ+ EA+++ D  + + KGFGF+TF SED+A  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 86  LTEMNGKPLNGRVIFVEYAKPTSKSRGGI 115
           L  ++GK ++GR+IFVE AK   + R GI
Sbjct: 65  LKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93

[Close]

BLAST of HG10020093 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 29  KLFVGGLSFYTTDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTE 88
           KLF+ GLSFYT++K L  AF  +G++VE K++MD++S +SKG+ F+ + +E+ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 89  MNGKPLNGRVIFVEYAK 106
           MNGK +NG +I V+ AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359

The following BLAST results are available for this feature:

BLAST of HG10020093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903502.1	6.1e-61	96.06	small RNA-binding protein 11, chloroplastic [Benincasa hispida]	[more]
XP_023005174.1	7.4e-59	92.91	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_023538908.1	5.5e-54	88.19	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933740.1	1.2e-53	87.40	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
KAG6596588.1	1.2e-53	86.61	Small RNA-binding protein 11, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]

BLAST of HG10020093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	1.9e-33	71.29	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	6.0e-19	51.61	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	8.6e-18	52.94	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q8L440	2.5e-17	51.95	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	3.3e-17	50.56	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]

BLAST of HG10020093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYF3	3.6e-59	92.91	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F5P0	5.9e-54	87.40	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0LE31	7.8e-54	85.83	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]
A0A5A7TKK4	1.0e-53	85.83	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7I3	1.0e-53	85.83	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]

BLAST of HG10020093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	1.4e-34	71.29	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	4.2e-20	51.61	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	4.2e-20	51.61	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	1.2e-19	49.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.8e-18	51.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 29..102 e-value: 2.3E-28 score: 110.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 30..99 e-value: 5.5E-22 score: 77.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 28..106 score: 20.985703
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..126 e-value: 5.3E-31 score: 109.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..127
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 11..125
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 11..125
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 29..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020093.1	HG10020093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding