HG10019990 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019990
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L21, putative, expressed
Location	Chr04: 27670552 .. 27671567 (-)
RNA-Seq Expression	HG10019990
Synteny	HG10019990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCGGCCATGGACTTCGTTCCCGTACCAGAGATCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTATTTGCGGACGTACAAAATTGGCGAGTATGTCGATATCAAAGTTAACGGCGCTGTCCACAAGGGTATGCCGCATAAATTTTACCATGGTCGCACAGGTCGAGTATGGAATGTTACAAAGCGTGCCATCGGTGTCGAGATCAACAAGCAGGTTCGTTTCCGTTTTCGTTTCCTTTCGTGTCTGGATTGGTTTTGTTTTCGATTCTTTTATTAGATCTGTTTTGGTTTTCATTCTGCTGTGGTTTTTAGAATGTATATGATTTTGGAGATTCAGGGTAATAGATTGTGTTTGATTTTCATAGAAACTGTTTTAGGTTGGACTCTGTTCTGTTTCTTAAGTTTCTGGTTGCTGTTGGTTGGATATGTATCTGTTAATCTGTGTAGCAACTCATTCGGTGATAGTATAATGGTAATGTTCTAACGATTGTTGTTTTAATTTGATATAATGGTATACTTGTTTGTGAATAATCGGGGTATTTCATATGTATTTGAAGAGTTAATTGTTTTGAGTAGTTTCTGCCTTATGATGCTGTTCATCAAATGATTTGGTTTGGCTGTAAAGGGTTATTGTTATAATGTCATTTGATTAGATTATTCAGGAAGCTAAACAATGTTGTGATTCAATCAAATTAGACACACTTGTGTTCTAATGTTCTTCTATGAATTTTGCAGGTCGGCAACAGAATTATCAAGAAGAGAATTCACGTCCGTGTTGAGCACGTGCAGCCTTCCCGATGCACCGAGGAATTTCGTTTGAGGAAGGTGAAGAATGATGAACTGAAGGCCGATGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTTAATGATCTCAAGGGTGGCTATTAG

mRNA sequence

ATGCCGGCCGGCCATGGACTTCGTTCCCGTACCAGAGATCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTATTTGCGGACGTACAAAATTGGCGAGTATGTCGATATCAAAGTTAACGGCGCTGTCCACAAGGGTATGCCGCATAAATTTTACCATGGTCGCACAGGTCGAGTATGGAATGTTACAAAGCGTGCCATCGGTGTCGAGATCAACAAGCAGGTCGGCAACAGAATTATCAAGAAGAGAATTCACGTCCGTGTTGAGCACGTGCAGCCTTCCCGATGCACCGAGGAATTTCGTTTGAGGAAGGTGAAGAATGATGAACTGAAGGCCGATGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTTAATGATCTCAAGGGTGGCTATTAG

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTCGTTCCCGTACCAGAGATCTCTTCGCCAGGCCTTTCAGGAAGAAGGGTTATATTGCTTTGACTACCTATTTGCGGACGTACAAAATTGGCGAGTATGTCGATATCAAAGTTAACGGCGCTGTCCACAAGGGTATGCCGCATAAATTTTACCATGGTCGCACAGGTCGAGTATGGAATGTTACAAAGCGTGCCATCGGTGTCGAGATCAACAAGCAGGTCGGCAACAGAATTATCAAGAAGAGAATTCACGTCCGTGTTGAGCACGTGCAGCCTTCCCGATGCACCGAGGAATTTCGTTTGAGGAAGGTGAAGAATGATGAACTGAAGGCCGATGCCAAGGCCAAAGGTGAAGTCATTTGTACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTGACTCCCATTCCATACGATGTCGTTAATGATCTCAAGGGTGGCTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of HG10019990 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 162/164 (98.78%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 7.5e-88
Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. NCBI nr
Match: XP_031739289.1 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal protein L21-1 [Cucumis sativus] >XP_031745254.1 60S ribosomal protein L21-1 [Cucumis sativus] >KAE8651128.1 hypothetical protein Csa_001407 [Cucumis sativus] >KGN43674.2 hypothetical protein Csa_017109 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 160/164 (97.56%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 2.2e-87
Identity = 158/164 (96.34%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIG+YVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. NCBI nr
Match: XP_004140433.3 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal protein L21-1-like [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 3.7e-87
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEH+QPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHMQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 301.6 bits (771), Expect = 5.4e-81
Identity = 138/164 (84.15%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 7.1e-81
Identity = 137/164 (83.54%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-42
Identity = 92/158 (58.23%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIGEYVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of HG10019990 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-41
Identity = 81/157 (51.59%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+G+ VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of HG10019990 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-41
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRT+++G+YVDIK  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   +AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of HG10019990 vs. ExPASy TrEMBL
Match: A0A5D3DP20 (60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005180 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.6e-88
Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy TrEMBL
Match: A0A1S3B7V0 (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.6e-88
Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy TrEMBL
Match: A0A0A0LEZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.1e-88
Identity = 160/164 (97.56%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKA+AK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy TrEMBL
Match: A0A6J1F7A4 (60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 158/164 (96.34%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIG+YVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. ExPASy TrEMBL
Match: A0A6J1KU90 (60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF LRKVKND+LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-82
Identity = 138/164 (84.15%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-82
Identity = 138/164 (84.15%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-82
Identity = 137/164 (83.54%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of HG10019990 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-82
Identity = 137/164 (83.54%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of HG10019990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906379.1	1.2e-88	98.78	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_008443016.1	7.5e-88	98.17	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]
XP_031739289.1	1.7e-87	97.56	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal prot...	[more]
XP_022934303.1	2.2e-87	96.34	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]
XP_004140433.3	3.7e-87	96.95	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal prot...	[more]

BLAST of HG10019990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	5.4e-81	84.15	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	7.1e-81	83.54	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
O82574	1.7e-42	58.23	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q02753	7.2e-41	51.59	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
Q54X53	7.2e-41	53.46	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]

BLAST of HG10019990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP20	3.6e-88	98.17	60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B7V0	3.6e-88	98.17	60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1	[more]
A0A0A0LEZ0	8.1e-88	97.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1	[more]
A0A6J1F7A4	1.1e-87	96.34	60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 P...	[more]
A0A6J1KU90	1.8e-87	96.95	60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=...	[more]

BLAST of HG10019990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	3.9e-82	84.15	Translation protein SH3-like family protein	[more]
AT1G09690.1	3.9e-82	84.15	Translation protein SH3-like family protein	[more]
AT1G57660.1	5.0e-82	83.54	Translation protein SH3-like family protein	[more]
AT1G57860.1	5.0e-82	83.54	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 7.5E-46 score: 156.2
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 3.5E-23 score: 83.4
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 1.3E-45 score: 153.3
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019990.1	HG10019990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome