HG10019692 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019692
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	polyvinylalcohol dehydrogenase-like
Location	Chr04: 24460421 .. 24460696 (-)
RNA-Seq Expression	HG10019692
Synteny	HG10019692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCTGTACGCCGATTAGAGCTTCCAATGGAGCTCTTATTTGGAAGAAGAATCTGCAAAAACTGACGGGGTTCAACAATACCGGATTCATTCTAAATGTTAACTCCACGGTGTCCAGATCGACTCCCACGGTGGTCGGAGAATTGCTCCTCGTCGGAATATATGGACCTGCCGTCGTCATCGCTGTTAAAAGATCAACGGGGAAGCTTGTGTGGTCAACGAGGCTGGATTATAAAAATAGAAGTTTCATCACCATGTCTGGCACATACTAA

mRNA sequence

ATGGGTTTCTGTACGCCGATTAGAGCTTCCAATGGAGCTCTTATTTGGAAGAAGAATCTGCAAAAACTGACGGGGTTCAACAATACCGGATTCATTCTAAATGTTAACTCCACGGTGTCCAGATCGACTCCCACGGTGGTCGGAGAATTGCTCCTCGTCGGAATATATGGACCTGCCGTCGTCATCGCTGTTAAAAGATCAACGGGGAAGCTTGTGTGGTCAACGAGGCTGGATTATAAAAATAGAAGTTTCATCACCATGTCTGGCACATACTAA

Coding sequence (CDS)

ATGGGTTTCTGTACGCCGATTAGAGCTTCCAATGGAGCTCTTATTTGGAAGAAGAATCTGCAAAAACTGACGGGGTTCAACAATACCGGATTCATTCTAAATGTTAACTCCACGGTGTCCAGATCGACTCCCACGGTGGTCGGAGAATTGCTCCTCGTCGGAATATATGGACCTGCCGTCGTCATCGCTGTTAAAAGATCAACGGGGAAGCTTGTGTGGTCAACGAGGCTGGATTATAAAAATAGAAGTTTCATCACCATGTCTGGCACATACTAA

Protein sequence

MGFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVVIAVKRSTGKLVWSTRLDYKNRSFITMSGTY

Homology

[Close]

BLAST of HG10019692 vs. NCBI nr
Match: XP_031738007.1 (uncharacterized protein LOC101211277 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 4.4e-37
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GEL++VGIYGPAVV
Sbjct: 89  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELVVVGIYGPAVV 148

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW TRLDYKNRSFITMSGTY
Sbjct: 149 IGVKRSTGKLVWCTRLDYKNRSFITMSGTY 178

[Close]

BLAST of HG10019692 vs. NCBI nr
Match: KGN59583.1 (hypothetical protein Csa_002525 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 4.4e-37
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GEL++VGIYGPAVV
Sbjct: 89  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELVVVGIYGPAVV 148

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW TRLDYKNRSFITMSGTY
Sbjct: 149 IGVKRSTGKLVWCTRLDYKNRSFITMSGTY 178

[Close]

BLAST of HG10019692 vs. NCBI nr
Match: KAA0053748.1 (polyvinylalcohol dehydrogenase-like [Cucumis melo var. makuwa] >TYK25655.1 polyvinylalcohol dehydrogenase-like [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 8.3e-36
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GELL+VGIYGPAVV
Sbjct: 88  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELLVVGIYGPAVV 147

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW  R+DYK RSFITMSGTY
Sbjct: 148 IGVKRSTGKLVWCRRMDYKKRSFITMSGTY 177

[Close]

BLAST of HG10019692 vs. NCBI nr
Match: XP_008443424.1 (PREDICTED: polyvinylalcohol dehydrogenase-like [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 8.3e-36
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GELL+VGIYGPAVV
Sbjct: 88  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELLVVGIYGPAVV 147

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW  R+DYK RSFITMSGTY
Sbjct: 148 IGVKRSTGKLVWCRRMDYKKRSFITMSGTY 177

[Close]

BLAST of HG10019692 vs. NCBI nr
Match: XP_022159165.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025591 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   + A+NG L+WKKNLQKLTGF+NTGFILNVNSTVSRSTPTV GELLLVGIYGPA V
Sbjct: 90  GFLYAVGAANGTLLWKKNLQKLTGFSNTGFILNVNSTVSRSTPTVAGELLLVGIYGPAAV 149

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           +AVKRSTG LVWSTRLDY NRSFI+MSGTY
Sbjct: 150 VAVKRSTGNLVWSTRLDYNNRSFISMSGTY 179

[Close]

BLAST of HG10019692 vs. ExPASy TrEMBL
Match: A0A0A0LCT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827260 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GEL++VGIYGPAVV
Sbjct: 89  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELVVVGIYGPAVV 148

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW TRLDYKNRSFITMSGTY
Sbjct: 149 IGVKRSTGKLVWCTRLDYKNRSFITMSGTY 178

[Close]

BLAST of HG10019692 vs. ExPASy TrEMBL
Match: A0A5A7UF76 (Polyvinylalcohol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008180 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GELL+VGIYGPAVV
Sbjct: 88  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELLVVGIYGPAVV 147

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW  R+DYK RSFITMSGTY
Sbjct: 148 IGVKRSTGKLVWCRRMDYKKRSFITMSGTY 177

[Close]

BLAST of HG10019692 vs. ExPASy TrEMBL
Match: A0A1S3B7I7 (polyvinylalcohol dehydrogenase-like OS=Cucumis melo OX=3656 GN=LOC103487015 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   +RASNGAL+WKKNLQKLTGFNNTGFILNVNSTVSRSTPTV GELL+VGIYGPAVV
Sbjct: 88  GFLYAVRASNGALLWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGELLVVGIYGPAVV 147

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           I VKRSTGKLVW  R+DYK RSFITMSGTY
Sbjct: 148 IGVKRSTGKLVWCRRMDYKKRSFITMSGTY 177

[Close]

BLAST of HG10019692 vs. ExPASy TrEMBL
Match: A0A6J1DXW9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025591 OS=Momordica charantia OX=3673 GN=LOC111025591 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.9e-35
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           GF   + A+NG L+WKKNLQKLTGF+NTGFILNVNSTVSRSTPTV GELLLVGIYGPA V
Sbjct: 90  GFLYAVGAANGTLLWKKNLQKLTGFSNTGFILNVNSTVSRSTPTVAGELLLVGIYGPAAV 149

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           +AVKRSTG LVWSTRLDY NRSFI+MSGTY
Sbjct: 150 VAVKRSTGNLVWSTRLDYNNRSFISMSGTY 179

[Close]

BLAST of HG10019692 vs. ExPASy TrEMBL
Match: A0A2N9HSE8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42525 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.3e-34
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 2   GFCTPIRASNGALIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVVGELLLVGIYGPAVV 61
           G+   ++AS+G+LIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTV G LL++GIYGP VV
Sbjct: 98  GYIYAVKASDGSLIWKKNLQKLTGFNNTGFILNVNSTVSRSTPTVAGNLLVIGIYGPTVV 157

Query: 62  IAVKRSTGKLVWSTRLDYKNRSFITMSGTY 92
           IAVKRSTGKLVWSTRLD   RSFITMSGTY
Sbjct: 158 IAVKRSTGKLVWSTRLDNHTRSFITMSGTY 187

The following BLAST results are available for this feature:

BLAST of HG10019692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738007.1	4.4e-37	88.89	uncharacterized protein LOC101211277 [Cucumis sativus]	[more]
KGN59583.1	4.4e-37	88.89	hypothetical protein Csa_002525 [Cucumis sativus]	[more]
KAA0053748.1	8.3e-36	86.67	polyvinylalcohol dehydrogenase-like [Cucumis melo var. makuwa] >TYK25655.1 polyv...	[more]
XP_008443424.1	8.3e-36	86.67	PREDICTED: polyvinylalcohol dehydrogenase-like [Cucumis melo]	[more]
XP_022159165.1	2.0e-34	83.33	LOW QUALITY PROTEIN: uncharacterized protein LOC111025591 [Momordica charantia]	[more]

BLAST of HG10019692 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCT6	2.1e-37	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827260 PE=4 SV=1	[more]
A0A5A7UF76	4.0e-36	86.67	Polyvinylalcohol dehydrogenase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B7I7	4.0e-36	86.67	polyvinylalcohol dehydrogenase-like OS=Cucumis melo OX=3656 GN=LOC103487015 PE=4...	[more]
A0A6J1DXW9	9.9e-35	83.33	LOW QUALITY PROTEIN: uncharacterized protein LOC111025591 OS=Momordica charantia...	[more]
A0A2N9HSE8	8.3e-34	82.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42525 PE=4 SV=1	[more]

BLAST of HG10019692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 5..90 e-value: 2.1E-7 score: 32.4
None	No IPR available	PANTHER	PTHR32303:SF16	PQQ ENZYME REPEAT PROTEIN	coord: 4..91
None	No IPR available	PANTHER	PTHR32303	QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C)	coord: 4..91
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 5..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019692.1	HG10019692.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding