HG10019415 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019415
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase II subunit RPB11-like protein
Location	Chr04: 21592609 .. 21594727 (-)
RNA-Seq Expression	HG10019415
Synteny	HG10019415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGTAATTTCACAAACTCTTACCTTTTTCTCTATTCACACCAATTTTCTCAGTTTCTGACGTTTTTTCCCCTTCTCTAGGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGTATGACCCTTTTGAAAACTTTTATATTACTGCTTGAAATTTATTTAAGTGGAGTTAGTAATGGGGTTTTTTTTTTTCGATGAGCAGGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGGTTAGTTCATTTTCCTCTTATTTTCGGGTTTTGTGATTTGGAATAGGGTTTAAGGGAGCTTTGAACTTGTGGGTTTTATCCCTGTTCTGTTACTTTGTGCTTGTTTTGATTGGATGAACAATTTAAGATTCTGCTTTAGTTTAAGCTGTTGGTTTTAGTAGTAGGCGGTTTTGAGTTCAAATTATTTCATTCATCCCCAGTGAGGGTTAAACTATCCCTTGTTGAATATCTTGCCAATCAATGAGCTGACAAGGAAGAGTGTTAAAGATATATTTGATCAAGCTTTTGAGTTCAGGAGTGATTTAACAAATATTCTCACTTGGACCTATGTTCTTTTTCTTGGTTTGTAATATATTGAAGTTAGAAATCACATAGTTTTGGGTCAAAAGGGTCGAAACTCGAGCTAAAAGGCTATGCAACTTGGTTTCCCATTGTCCTTACTACTAAGCCATTGAGCTTTTTTAGTATGAGTTTATCATAAATAGAGTGAGTGGGGAGGAAGGAGGCAAAGATTTAGTTCACTTAGGTTTGGGTGAGAGCATTCAAGAAGGGAGGGAGGTCCCAAGCACGTTGAATACTAGGGGAGTCGTTGCAGTTCTTCATCCTTTATATATGTTATACTTCAATATCATTTCAGTTCTTTGGTTTCTATCAAACTTTTGGAATAAGAACTAACTTTTTGAGGGAGATGAGGATAACTGTTTACGAAAGTCCATTCCCCCATAGCTTAACTGTATACCTGGTCTTCTGTTGAGAACATGGTTCAATGGGGTTTCAGCAAGATTATGTTGATGTTGACTAGCTTTACTTATAAGGAAGCAAGTTCTTAAATTCTTTTAATTAATCCAAATATGCTTGTGGTGCAAAGATGTGATTTCAAGCACCTCAAATTTTAGAGACGGTTTTTCATGTTGTTTGAAACCATTAGGATATCAAAAGCTGGAAAGCAAGACATTCAAAATTGATGAATTTCTGGGTTTTTGATCACTTCAGATTTTATTTTTTTCCCTCTCAAGTTAATCTTACCTATCTTACTGCATTGTGGTGGGATGGCTACTTACAATCTTTGTATTAAAAGAAATGTTTGGTATTTATATTGGCCCTGCTGAAATTACCTACAGATGGAATTGACCTGTCTATGATCCGTTGCATGTTCCACATACATTAGCAACGAAGGAACCTGAAGTATTCTTTTAAAAAGGAAACTTGATGATGAATTCAACTTGTCTAGTCCATCCACCTTATATGTTTGATAGTATAGTGTATCCTTCATAGTATAGTGTATTAATGATTAATATGGTTCTAAGAACCATTCTATTTGCCTGTTTCATACCTCCATATAAATATGTTTTTAAGTTCTTGGATCCATACTTGACCATTTCGAGATTATTTGTTGAACTTTAATTTAATGTGACTTTATTAATCTTTTGGTTTCATTTTAATTTTTCATTGAACTACCAACAAGATGGTTCTCGCCTTCTCAATATTTTAGTATGGAAGTGCACTTGTATATGGTACACCATAAATGGAAGTTGCATTTTCTTTATACTCTTCCTGTATCTTTTTCCTGTTGGGTTGATATTTATTTACTTGGGGCTATCTTTCACAAACTGATTATTCCTGCTCTTCAGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA

mRNA sequence

ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA

Coding sequence (CDS)

ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV

Homology

[Close]

BLAST of HG10019415 vs. NCBI nr
Match: KAG5539074.1 (hypothetical protein RHGRI_019578 [Rhododendron griersonianum])

HSP 1 Score: 217.2 bits (552), Expect = 6.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTVGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. NCBI nr
Match: KAE9459807.1 (hypothetical protein C3L33_08289, partial [Rhododendron williamsianum])

HSP 1 Score: 217.2 bits (552), Expect = 6.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTVGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. NCBI nr
Match: RYR69425.1 (hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea])

HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. NCBI nr
Match: RYR22165.1 (hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea])

HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 106

[Close]

BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.7e-52
Identity = 97/106 (91.51%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FE
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106

[Close]

BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-27
Identity = 52/105 (49.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L+N+F
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105

[Close]

BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F V
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107

[Close]

BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-26
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

[Close]

BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A6A4LZ80 (RNA_pol_L_2 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_08289 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.2e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTVGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 106

[Close]

BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445A731 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067442 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445E1Q7 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015966 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEV
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEV 107

[Close]

BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445A743 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067442 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 144 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 203

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV 108
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHLKNAFEV
Sbjct: 204 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEV 250

[Close]

BLAST of HG10019415 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-53
Identity = 97/106 (91.51%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FE
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106

[Close]

BLAST of HG10019415 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-48
Identity = 97/136 (71.32%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 107
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]

BLAST of HG10019415 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFE 107
             A  +L +   H+++ F+
Sbjct: 69  KDACQELMQMNRHVRSVFD 86

[Close]

BLAST of HG10019415 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFE 107
             A  +L +   H+++ F+
Sbjct: 69  KDACQELMQMNRHVRSVFD 86

The following BLAST results are available for this feature:

BLAST of HG10019415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5539074.1	6.7e-53	98.13	hypothetical protein RHGRI_019578 [Rhododendron griersonianum]	[more]
KAE9459807.1	6.7e-53	98.13	hypothetical protein C3L33_08289, partial [Rhododendron williamsianum]	[more]
RYR69425.1	8.7e-53	98.13	hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea]	[more]
RYR22165.1	8.7e-53	98.13	hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea]	[more]
XP_008461807.1	8.7e-53	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]

BLAST of HG10019415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	7.7e-52	91.51	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	2.9e-27	49.52	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	3.8e-27	52.34	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	3.8e-27	52.34	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]
Q9VJE4	1.5e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of HG10019415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4LZ80	3.2e-53	98.13	RNA_pol_L_2 domain-containing protein (Fragment) OS=Rhododendron williamsianum O...	[more]
A0A0A0LCD5	4.2e-53	100.00	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A445A731	4.2e-53	98.13	RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067...	[more]
A0A445E1Q7	4.2e-53	98.13	RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015...	[more]
A0A445A743	4.2e-53	98.13	RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067...	[more]

BLAST of HG10019415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	5.5e-53	91.51	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	3.1e-48	71.32	DNA-directed RNA polymerase, RBP11-like	[more]
AT2G29540.1	7.0e-08	30.38	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	7.0e-08	30.38	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..105
None	No IPR available	PANTHER	PTHR13946:SF36	DNA-DIRECTED RNA POLYMERASES II IV AND V SUBUNIT 11	coord: 1..105
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..107 e-value: 6.5E-47 score: 160.0
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..106
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 4.0E-25 score: 87.4
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 5.78504E-50 score: 151.206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019415.1	HG10019415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity