
HG10019415 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGTAATTTCACAAACTCTTACCTTTTTCTCTATTCACACCAATTTTCTCAGTTTCTGACGTTTTTTCCCCTTCTCTAGGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGTATGACCCTTTTGAAAACTTTTATATTACTGCTTGAAATTTATTTAAGTGGAGTTAGTAATGGGGTTTTTTTTTTTCGATGAGCAGGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGGTTAGTTCATTTTCCTCTTATTTTCGGGTTTTGTGATTTGGAATAGGGTTTAAGGGAGCTTTGAACTTGTGGGTTTTATCCCTGTTCTGTTACTTTGTGCTTGTTTTGATTGGATGAACAATTTAAGATTCTGCTTTAGTTTAAGCTGTTGGTTTTAGTAGTAGGCGGTTTTGAGTTCAAATTATTTCATTCATCCCCAGTGAGGGTTAAACTATCCCTTGTTGAATATCTTGCCAATCAATGAGCTGACAAGGAAGAGTGTTAAAGATATATTTGATCAAGCTTTTGAGTTCAGGAGTGATTTAACAAATATTCTCACTTGGACCTATGTTCTTTTTCTTGGTTTGTAATATATTGAAGTTAGAAATCACATAGTTTTGGGTCAAAAGGGTCGAAACTCGAGCTAAAAGGCTATGCAACTTGGTTTCCCATTGTCCTTACTACTAAGCCATTGAGCTTTTTTAGTATGAGTTTATCATAAATAGAGTGAGTGGGGAGGAAGGAGGCAAAGATTTAGTTCACTTAGGTTTGGGTGAGAGCATTCAAGAAGGGAGGGAGGTCCCAAGCACGTTGAATACTAGGGGAGTCGTTGCAGTTCTTCATCCTTTATATATGTTATACTTCAATATCATTTCAGTTCTTTGGTTTCTATCAAACTTTTGGAATAAGAACTAACTTTTTGAGGGAGATGAGGATAACTGTTTACGAAAGTCCATTCCCCCATAGCTTAACTGTATACCTGGTCTTCTGTTGAGAACATGGTTCAATGGGGTTTCAGCAAGATTATGTTGATGTTGACTAGCTTTACTTATAAGGAAGCAAGTTCTTAAATTCTTTTAATTAATCCAAATATGCTTGTGGTGCAAAGATGTGATTTCAAGCACCTCAAATTTTAGAGACGGTTTTTCATGTTGTTTGAAACCATTAGGATATCAAAAGCTGGAAAGCAAGACATTCAAAATTGATGAATTTCTGGGTTTTTGATCACTTCAGATTTTATTTTTTTCCCTCTCAAGTTAATCTTACCTATCTTACTGCATTGTGGTGGGATGGCTACTTACAATCTTTGTATTAAAAGAAATGTTTGGTATTTATATTGGCCCTGCTGAAATTACCTACAGATGGAATTGACCTGTCTATGATCCGTTGCATGTTCCACATACATTAGCAACGAAGGAACCTGAAGTATTCTTTTAAAAAGGAAACTTGATGATGAATTCAACTTGTCTAGTCCATCCACCTTATATGTTTGATAGTATAGTGTATCCTTCATAGTATAGTGTATTAATGATTAATATGGTTCTAAGAACCATTCTATTTGCCTGTTTCATACCTCCATATAAATATGTTTTTAAGTTCTTGGATCCATACTTGACCATTTCGAGATTATTTGTTGAACTTTAATTTAATGTGACTTTATTAATCTTTTGGTTTCATTTTAATTTTTCATTGAACTACCAACAAGATGGTTCTCGCCTTCTCAATATTTTAGTATGGAAGTGCACTTGTATATGGTACACCATAAATGGAAGTTGCATTTTCTTTATACTCTTCCTGTATCTTTTTCCTGTTGGGTTGATATTTATTTACTTGGGGCTATCTTTCACAAACTGATTATTCCTGCTCTTCAGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA ATGAATGCCCCCGACCGATACGAGCGCTTCGTCGTCCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACAAAAATCATTAATGCGGCGTCGTTTACCATTGAACGAGAGGAACATACCATTGGAAACATCTTGCGAATGCAGCTGCACAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAGTATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCACCGATGCAAGCATATAATCAAGCCATCAACGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGA MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEV Homology
BLAST of HG10019415 vs. NCBI nr
Match: KAG5539074.1 (hypothetical protein RHGRI_019578 [Rhododendron griersonianum]) HSP 1 Score: 217.2 bits (552), Expect = 6.7e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. NCBI nr
Match: KAE9459807.1 (hypothetical protein C3L33_08289, partial [Rhododendron williamsianum]) HSP 1 Score: 217.2 bits (552), Expect = 6.7e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. NCBI nr
Match: RYR69425.1 (hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea]) HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. NCBI nr
Match: RYR22165.1 (hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea]) HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]) HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 7.7e-52 Identity = 97/106 (91.51%), Postives = 105/106 (99.06%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 2.9e-27 Identity = 52/105 (49.52%), Postives = 82/105 (78.10%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27 Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27 Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.5e-26 Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A6A4LZ80 (RNA_pol_L_2 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_08289 PE=3 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 3.2e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445A731 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067442 PE=3 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445E1Q7 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015966 PE=3 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. ExPASy TrEMBL
Match: A0A445A743 (RNA_pol_L_2 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067442 PE=3 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53 Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of HG10019415 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like ) HSP 1 Score: 204.1 bits (518), Expect = 5.5e-53 Identity = 97/106 (91.51%), Postives = 105/106 (99.06%), Query Frame = 0
BLAST of HG10019415 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like ) HSP 1 Score: 188.3 bits (477), Expect = 3.1e-48 Identity = 97/136 (71.32%), Postives = 105/136 (77.21%), Query Frame = 0
BLAST of HG10019415 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit ) HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08 Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 0
BLAST of HG10019415 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit ) HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08 Identity = 24/79 (30.38%), Postives = 46/79 (58.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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