HG10019403 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019403
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein
Location	Chr04: 21453067 .. 21455783 (+)
RNA-Seq Expression	HG10019403
Synteny	HG10019403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTGTACTTCCACTTCTCCTTCTTCCTTAATGCTCACTTCTGCTTCTTCTTCTGTACATCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCCCAATTTTCCACCATCAAATCCTTCTCTTCTTCTCATTTCCTCTGCAGGTCTAGGAGATCAGCCGATTGGGTATTTCTTCATTTTCACAGACGAGCGAGGCAACATGTGATCGTTGCAGCTCTCGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAGGGGGTTGCTGCGGCGGCAACGGCTACCGTCGCTGCGCCAAAACCCATGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGAGTATGCTCCAAAACCTTGTGGTGTTTGGTTTGTTTTTTGATTTGGGTCTGATGATTGGATTGTGGGTTGTGCTTTAGAAATGGAGGGTGTTCTCTTTTTCCAGGATGTTTAATGATCATTGCGGTGGACTATTGGCTTCATTTTCTTTGGCTTTTCATGTCCTTGTTTTATTATTGATGTCTGAATTCAATTTGTTGCGTGATATGTCAGAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGGAAGCACAAAGTTTGTAGAAACAGCTGAAGCTCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTGAGTTTTGTTTTATGATCCCTTTACTGTTAAGTGAAGTTATAAAGAATATGGATGTCATGAGGTTATTTTGTTTGAATGCTTTTATGCAGGTAAATCTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTAGTTGGTAGTTACTTTTAATACTTGAGCGACTCTCTCTCTCTCTCAAACTATGCTATATGTTCTCACATTTTAACTAAATCCACCAAGTTGAGTCTCTGTCTGTGGCTTAGGGCTTGTTTGAGAGTTGGGTTTGAAACAGGTTTATGTTTTTAGAACAAAAAGTAGTGTAAATATGTTCCAATAACTATTTCCAAAAGCCTTTTTTCTTTACACTGATGACTTGATTTTTTCAAATAAATGAAGCCATTAGAAATCAATCACGAATAATACTAATCTTTACATTCCCTTTGATCACTGTTCTTAAAAATAGTTTTGAAAATAGTTAGCTTAGTTAGACAAACACAAGCTATCTCGATTGCAATCAAGAAACTTAGTTATCTTCTTGTTGAACTCTAAGCTAAGTCTTGGTAGTAGAGAATTGGGATTGTACCATAATTTGAAGTTTGCACCCTTGAGTTGAGGTCCATGGATCGTTCCCAATTTCAGTCCGTGGCAGTTTGATTTCGGTCGAACCAAATAGTAGGTTTTTATGCATCTAGATTCCTTTTTTCTTTAGAGGTGTTTGGCCCTAGGAGTTCATGGGCCCCATGACTTAAAAACATCAATTCTATGACTTATTAACTCCCTACACTGTGGAACCCATAGTTAAACAACTCCATAAACTACACAACTCAACTCCTTGGGCCAAATGCCCCTTCGTAGATGCTTTTTAAAAGAACTTTACTGTTTAGGTGCAATCCTAAAAGTTGAAAGAAATACACAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGCCCTGAGTGCATTACTCCAATCATTCTTTCATTTATCTTTTGAGATTTTTATGACTTTCACAACATATAAATTGTTTTCCTAAACAAGTTGCATAACTTTAAAAGATGAATTAGATGGTTAGGATTACACTGGTGATACTGCTTATGTAATGCAGAAAGAAATAAGAAAACAAGAGACATGAATACCAATTTAATAGTCACCCTGAGTTTACTGAACCATTTTCGGTCATAGATATGCTTCCTAGATTTTGTTGATCAGAGTGCTTGCCTTATGGCTGCAGCCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGTATCAATGATATTTTTCCAGTACCTACATTGCATCCAGATTTCATATCTATCCACTGGAAAAAGAAATTTAAGACTTTAGTTAAACCATCGGGCATCACTGATTTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAGTACGTTCTTCCCTTCTTTCTGTAGCCGATAGTCTCTAGAGACAGATCTCACTCATTTTTGATAAGTCATTTTCTTCTACCTCTGACAGAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGA

mRNA sequence

ATGGCAGCTTGTACTTCCACTTCTCCTTCTTCCTTAATGCTCACTTCTGCTTCTTCTTCTGTACATCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCCCAATTTTCCACCATCAAATCCTTCTCTTCTTCTCATTTCCTCTGCAGGTCTAGGAGATCAGCCGATTGGGTATTTCTTCATTTTCACAGACGAGCGAGGCAACATGTGATCGTTGCAGCTCTCGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAGGGGGTTGCTGCGGCGGCAACGGCTACCGTCGCTGCGCCAAAACCCATGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGAAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGGAAGCACAAAGTTTGTAGAAACAGCTGAAGCTCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTAAATCTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGCCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGA

Coding sequence (CDS)

ATGGCAGCTTGTACTTCCACTTCTCCTTCTTCCTTAATGCTCACTTCTGCTTCTTCTTCTGTACATCCCCAAGATCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCCCAATTTTCCACCATCAAATCCTTCTCTTCTTCTCATTTCCTCTGCAGGTCTAGGAGATCAGCCGATTGGGTATTTCTTCATTTTCACAGACGAGCGAGGCAACATGTGATCGTTGCAGCTCTCGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAGGGGGTTGCTGCGGCGGCAACGGCTACCGTCGCTGCGCCAAAACCCATGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGAAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGGAAGCACAAAGTTTGTAGAAACAGCTGAAGCTCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTAAATCTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTGAGAAATTCGATGAAGCAAAAAATGCTGGAGCGGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGCCAAATTTGACCCATTTCTTAAAATTGACGAAGTCTCTGTATGCAAAGTGTTATCTGGTCCTCGTTGATGACAATATAGTTGATTCCCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGACTCATGCCGAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCACTTACCATTTGGAAAAGCTGACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGCTGGACTTCAAACTTCCCTCAAGCGCTTGA

Protein sequence

MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADWVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA

Homology

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BLAST of HG10019403 vs. NCBI nr
Match: XP_008461822.1 (PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 615.9 bits (1587), Expect = 2.3e-172
Identity = 340/388 (87.63%), Postives = 346/388 (89.18%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSAD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSSS+FLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFL+F RRARQHVIVAALAAEANVAEVEAEEEE VAAAATAT  APKP KGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLP 300
           MPK                              VASLGKLLGPRGLMPNPKAGTVATNLP
Sbjct: 241 MPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLP 300

Query: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 360
           QAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWK
Sbjct: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 356

Query: 361 SAHICSSMGPSIRLNIREMLDFKLPSSA 388
           SAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 361 SAHICSSMGPSIRLNIRDMLDFKLPSSA 356

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BLAST of HG10019403 vs. NCBI nr
Match: XP_022152718.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 612.5 bits (1578), Expect = 2.6e-171
Identity = 334/391 (85.42%), Postives = 341/391 (87.21%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIK+FSS+HFLCR RRS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  VFLHFHRRARQHVIVAALAAE----ANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALP 120
           +FLHF RRAR HVIVAALAAE        E EA+EEEG+  AA ATVAAPKP KGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDGAA-ATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEM STKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTV+VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVAT 300
           PDMMPK                              VASLGKLLGPRGLMPNPKAGTVAT
Sbjct: 241 PDMMPK------------------------------VASLGKLLGPRGLMPNPKAGTVAT 300

Query: 301 NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGV 360
           NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKS+ETNKPSGAKGV
Sbjct: 301 NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSVETNKPSGAKGV 360

Query: 361 YWKSAHICSSMGPSIRLNIREMLDFKLPSSA 388
           YWKS HICSSMGPSIRLNIREMLDFKLPSSA
Sbjct: 361 YWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360

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BLAST of HG10019403 vs. NCBI nr
Match: XP_038905945.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 612.5 bits (1578), Expect = 2.6e-171
Identity = 338/388 (87.11%), Postives = 340/388 (87.63%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSF-SSSHFLCRSRRSAD 60
           MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFK KPQ STIKSF SSSHFL   RRS D
Sbjct: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKPKPQISTIKSFSSSSHFLGWPRRSTD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFLHF RRAR HVIVAALAAEANVAEVEAEEE       T TVAAPKP KGKAALPLKR
Sbjct: 61  WVFLHFQRRARHHVIVAALAAEANVAEVEAEEE-------TPTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLP 300
           MPK                              VASLGKLLGPRGLMPNPKAGTVATNLP
Sbjct: 241 MPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLP 300

Query: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 360
           QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK
Sbjct: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 351

Query: 361 SAHICSSMGPSIRLNIREMLDFKLPSSA 388
           SAHICSSMGPSIRLNIREMLDFKLPSSA
Sbjct: 361 SAHICSSMGPSIRLNIREMLDFKLPSSA 351

[Close]

BLAST of HG10019403 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 612.1 bits (1577), Expect = 3.4e-171
Identity = 329/387 (85.01%), Postives = 340/387 (87.86%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIKSFSS HFLCR RRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRD 120
           + L+F RRAR HVIVAALAAEANVAE EAE EEGVA   T TVAAPKP KGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY++KTAISLLKEM STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTV+VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
           PK                              VASLGKLLGPRGLMPNPKAGTVATNLPQ
Sbjct: 241 PK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLPQ 300

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL+NLLAAIKS+ETNKP+GAKGVYWKS
Sbjct: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKS 357

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSSA 388
           AHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 361 AHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of HG10019403 vs. NCBI nr
Match: KAA0048392.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 611.3 bits (1575), Expect = 5.8e-171
Identity = 340/389 (87.40%), Postives = 346/389 (88.95%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSAD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSSS+FLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFL+F RRARQHVIVAALAAEANVAEVEAEEEE VAAAATAT  APKP KGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVKVAVLTQG E+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGSERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNL 300
           MMPK                              VASLGKLLGPRGLMPNPKAGTVATNL
Sbjct: 241 MMPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNL 300

Query: 301 PQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYW 360
           PQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYW
Sbjct: 301 PQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW 357

Query: 361 KSAHICSSMGPSIRLNIREMLDFKLPSSA 388
           KSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 361 KSAHICSSMGPSIRLNIRDMLDFKLPSSA 357

[Close]

BLAST of HG10019403 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.7e-115
Identity = 240/386 (62.18%), Postives = 278/386 (72.02%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    S  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRD 120
                 R +    IV+A+AAEA++     + EE +   ATA +  PKP KGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+  +T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
            K                              VA LGK+LGPRGLMPNPKAGTV  N+PQ
Sbjct: 241 VK------------------------------VAGLGKILGPRGLMPNPKAGTVTANIPQ 300

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AI EFK+GKVE+RADKTGIVH+PFGK +F+EEDLLIN LAA+KS+ETNKP GAKGVYWKS
Sbjct: 301 AIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKS 345

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSS 387
           AHICSSMGPSI+LNIREM+DFK P++
Sbjct: 361 AHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of HG10019403 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 6.7e-114
Identity = 239/386 (61.92%), Postives = 280/386 (72.54%), Query Frame = 0


Query: 6   STSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADWVFLHF 65
           + +P SL L  ASSS   Q   S    FK     S++   + +    R R    WV    
Sbjct: 3   TAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQ---RERSCLKWVDFTS 62

Query: 66  HRRARQHV---IVAALAAEANVAEVEAEEEEGVAAAATATVAAP-KPMKGKAALPLKRDR 125
            +++ + V   ++AA+AAEA VA++E EE E   +   AT+ +P KP KGKAALPLK DR
Sbjct: 63  QKQSPKSVSFRVLAAVAAEAEVADMEEEEGE---SGGVATLPSPTKPKKGKAALPLKSDR 122

Query: 126 RRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRAT 185
            RSKRFLEIQKLRE K+EYDLKTA+SL+K+M STKFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 182

Query: 186 VNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 245
           V+LPKGTG+TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DMM 
Sbjct: 183 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 242

Query: 246 KPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQA 305
           K                              VASLG++LGPRGLMP PKAGTV  N+ QA
Sbjct: 243 K------------------------------VASLGRILGPRGLMPTPKAGTVTPNVAQA 302

Query: 306 IAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSA 365
           + EFK+GKVE+R DKTGIVH+PFGK +F EEDLLINL A IKS+ETNKP+GAKGVYWKSA
Sbjct: 303 VEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSA 352

Query: 366 HICSSMGPSIRLNIREMLDFKLPSSA 388
           HI SSMGPSIRLNIREMLD+K PS+A
Sbjct: 363 HISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of HG10019403 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.8e-73
Identity = 145/263 (55.13%), Postives = 185/263 (70.34%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  + Q   EN K Y+   A++LLKE+ + KF ETAEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDMM
Sbjct: 63  TVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMM 122

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
           PK                              VA LG+ LGPRGLMP+PK GTV T+L  
Sbjct: 123 PK------------------------------VAKLGRQLGPRGLMPSPKGGTVTTDLTG 182

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AIAEFK GK+E+RAD+TGIVH+ FGKA FS EDLL+NL A  ++++ N+PSGAKG YW++
Sbjct: 183 AIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRT 234

Query: 361 AHICSSMGPSIRLNIREMLDFKL 384
            ++ SSMGPSI+++I  + D KL
Sbjct: 243 VYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of HG10019403 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-71
Identity = 143/267 (53.56%), Postives = 185/267 (69.29%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+SLLKE  + KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
           P                              QVA LGK+LGPRGLMP+PK GTV  ++  
Sbjct: 123 P------------------------------QVAKLGKMLGPRGLMPSPKGGTVTFDIAS 182

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AIAEFK GK+E+RAD+TGIVH+ FGKA FS EDLL+NL A  ++I+ N+PSGAKG YW++
Sbjct: 183 AIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRT 238

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSSA 388
            ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 243 FYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of HG10019403 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.4e-71
Identity = 143/267 (53.56%), Postives = 185/267 (69.29%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+ LLKE  + KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ V+VAV+ +GEK  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
           P                              QVA LGK+LGPRGLMP+PK GTV  ++  
Sbjct: 123 P------------------------------QVAKLGKMLGPRGLMPSPKGGTVTFDVAS 182

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AIAEFK GK+E+RAD+TGIVH+ FGKA FS EDLL+NL A  ++I+ N+PSGAKG YW++
Sbjct: 183 AIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRT 238

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSSA 388
            ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 243 FYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of HG10019403 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 1.1e-172
Identity = 340/388 (87.63%), Postives = 346/388 (89.18%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSAD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSSS+FLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFL+F RRARQHVIVAALAAEANVAEVEAEEEE VAAAATAT  APKP KGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLP 300
           MPK                              VASLGKLLGPRGLMPNPKAGTVATNLP
Sbjct: 241 MPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLP 300

Query: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 360
           QAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWK
Sbjct: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 356

Query: 361 SAHICSSMGPSIRLNIREMLDFKLPSSA 388
           SAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 361 SAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of HG10019403 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 1.1e-172
Identity = 340/388 (87.63%), Postives = 346/388 (89.18%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSAD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSSS+FLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFL+F RRARQHVIVAALAAEANVAEVEAEEEE VAAAATAT  APKP KGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTVKVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLP 300
           MPK                              VASLGKLLGPRGLMPNPKAGTVATNLP
Sbjct: 241 MPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLP 300

Query: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 360
           QAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYWK
Sbjct: 301 QAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWK 356

Query: 361 SAHICSSMGPSIRLNIREMLDFKLPSSA 388
           SAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 361 SAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of HG10019403 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.3e-171
Identity = 334/391 (85.42%), Postives = 341/391 (87.21%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIK+FSS+HFLCR RRS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  VFLHFHRRARQHVIVAALAAE----ANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALP 120
           +FLHF RRAR HVIVAALAAE        E EA+EEEG+  AA ATVAAPKP KGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDGAA-ATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEM STKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTV+VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVAT 300
           PDMMPK                              VASLGKLLGPRGLMPNPKAGTVAT
Sbjct: 241 PDMMPK------------------------------VASLGKLLGPRGLMPNPKAGTVAT 300

Query: 301 NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGV 360
           NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKS+ETNKPSGAKGV
Sbjct: 301 NLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSVETNKPSGAKGV 360

Query: 361 YWKSAHICSSMGPSIRLNIREMLDFKLPSSA 388
           YWKS HICSSMGPSIRLNIREMLDFKLPSSA
Sbjct: 361 YWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360

[Close]

BLAST of HG10019403 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.6e-171
Identity = 329/387 (85.01%), Postives = 340/387 (87.86%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIKSFSS HFLCR RRSADW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRD 120
           + L+F RRAR HVIVAALAAEANVAE EAE EEGVA   T TVAAPKP KGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY++KTAISLLKEM STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTV+VAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
           PK                              VASLGKLLGPRGLMPNPKAGTVATNLPQ
Sbjct: 241 PK------------------------------VASLGKLLGPRGLMPNPKAGTVATNLPQ 300

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL+NLLAAIKS+ETNKP+GAKGVYWKS
Sbjct: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLVNLLAAIKSVETNKPTGAKGVYWKS 357

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSSA 388
           AHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 361 AHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of HG10019403 vs. ExPASy TrEMBL
Match: A0A5A7TXX7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001120 PE=3 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 2.8e-171
Identity = 340/389 (87.40%), Postives = 346/389 (88.95%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSAD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSSS+FLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKR 120
           WVFL+F RRARQHVIVAALAAEANVAEVEAEEEE VAAAATAT  APKP KGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVKVAVLTQG E+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGSERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNL 300
           MMPK                              VASLGKLLGPRGLMPNPKAGTVATNL
Sbjct: 241 MMPK------------------------------VASLGKLLGPRGLMPNPKAGTVATNL 300

Query: 301 PQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYW 360
           PQAIAEFKQGKVEYRADKTGIVHLPFGKA+FSEEDLLINLLAAIKSIETNKPSGAKGVYW
Sbjct: 301 PQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYW 357

Query: 361 KSAHICSSMGPSIRLNIREMLDFKLPSSA 388
           KSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 361 KSAHICSSMGPSIRLNIRDMLDFKLPSSA 357

[Close]

BLAST of HG10019403 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 416.8 bits (1070), Expect = 1.9e-116
Identity = 240/386 (62.18%), Postives = 278/386 (72.02%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    S  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRD 120
                 R +    IV+A+AAEA++     + EE +   ATA +  PKP KGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+  +T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
            K                              VA LGK+LGPRGLMPNPKAGTV  N+PQ
Sbjct: 241 VK------------------------------VAGLGKILGPRGLMPNPKAGTVTANIPQ 300

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSIETNKPSGAKGVYWKS 360
           AI EFK+GKVE+RADKTGIVH+PFGK +F+EEDLLIN LAA+KS+ETNKP GAKGVYWKS
Sbjct: 301 AIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKS 345

Query: 361 AHICSSMGPSIRLNIREMLDFKLPSS 387
           AHICSSMGPSI+LNIREM+DFK P++
Sbjct: 361 AHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of HG10019403 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 272.3 bits (695), Expect = 5.9e-73
Identity = 176/326 (53.99%), Postives = 208/326 (63.80%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSSHFLCRSRRSADW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    S  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAALPLKRD 120
                 R +    IV+A+AAEA++     + EE +   ATA +  PKP KGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+  +T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVASLGKLLGPRGLMPNPKAGTVATNLPQ 300
            K                              VA LGK+LGPRGLMPNPKAGTV  N+PQ
Sbjct: 241 VK------------------------------VAGLGKILGPRGLMPNPKAGTVTANIPQ 282

Query: 301 AIAEFKQGKVEYRADKTGIVHLPFGK 327
           +    ++GK+     K G+     GK
Sbjct: 301 S---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of HG10019403 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-31
Identity = 123/408 (30.15%), Postives = 192/408 (47.06%), Query Frame = 0


Query: 6   STSPSSLMLTSASSSVHP---------QDLASSIVSFKGKP--QFSTIKSFSSSHFLCRS 65
           S+S SS   +S+SS  +P         + +    VS+  KP  Q S  K+  S+  L +S
Sbjct: 32  SSSSSSSSSSSSSSDSNPSPDSNESRKKAVTIEPVSYAAKPKDQKSEPKNVESTENL-QS 91

Query: 66  RRSADWVFLHFHRRARQHVIVAALAAEANVAEVEAEEEEGVAAAATATVAAPKPMKGKAA 125
             SA+W      R   ++V  +      + A+  A   E   A        P+ M+ +  
Sbjct: 92  PESANWT-----REEIRYVKDSPSINPVSYAQRVAPLPEDRVAGENEGDRTPEEME-RER 151

Query: 126 LPLKRDRRRSKRFLEIQKLREN------------------KKEYDLKTAISLLKEMGSTK 185
             ++ + R  +RFL    + E+                  K  +DL  AI  +K     K
Sbjct: 152 KRIELENRARRRFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFDLMEAIREIKGNAKAK 211

Query: 186 FVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGG 245
           F ET EAH RL I+   ++  +R T+ LP    + VKVA   +G   ++AK AGAD+VGG
Sbjct: 212 FDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGG 271

Query: 246 EDLIEQI-KGGFMDFDKLIASPDMMPKPNLTHFLKLTKSLYAKCYLVLVDDNIVDSQVAS 305
            +LIE+I K G +DFD+ +A+P MMP+                              V  
Sbjct: 272 LELIEEILKSGKIDFDRCLATPKMMPR------------------------------VYK 331

Query: 306 LGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLL 365
           + ++L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L 
Sbjct: 332 ISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALR 391

Query: 366 INLLAAIKSIETNKPSGAKGV-----YWKSAHICSSMGPSIRLNIREM 379
            N+ A + ++   KP+G K       Y  + H+CS+MG    ++I+ +
Sbjct: 392 ENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of HG10019403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461822.1	2.3e-172	87.63	PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50...	[more]
XP_022152718.1	2.6e-171	85.42	LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica cha...	[more]
XP_038905945.1	2.6e-171	87.11	50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]	[more]
XP_022948661.1	3.4e-171	85.01	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
KAA0048392.1	5.8e-171	87.40	50S ribosomal protein L1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10019403 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY66	2.7e-115	62.18	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
Q9LE95	6.7e-114	61.92	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
B0JNQ5	5.8e-73	55.13	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	1.1e-71	53.56	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YLJ7	2.4e-71	53.56	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of HG10019403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLK6	1.1e-172	87.63	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00...	[more]
A0A1S3CFH3	1.1e-172	87.63	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1	[more]
A0A6J1DFM3	1.3e-171	85.42	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1	[more]
A0A6J1G9U2	1.6e-171	85.01	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1	[more]
A0A5A7TXX7	2.8e-171	87.40	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00...	[more]

BLAST of HG10019403 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	1.9e-116	62.18	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	5.9e-73	53.99	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	2.5e-31	30.15	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 249..304 e-value: 1.2E-10 score: 43.5
None	No IPR available	GENE3D	3.30.190.20		coord: 305..383 e-value: 1.2E-24 score: 88.4
None	No IPR available	GENE3D	3.30.190.20		coord: 138..248 e-value: 2.7E-32 score: 113.0
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 137..380
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 137..380
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 149..242 e-value: 8.2E-17 score: 61.6 coord: 252..369 e-value: 1.3E-25 score: 90.4
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 142..373 e-value: 8.09298E-69 score: 213.97
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 121..378 score: 38.043694
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 126..242
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 250..375

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019403.1	HG10019403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding