HG10019345 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019345
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor upbeat1
Location	Chr04: 20622521 .. 20622793 (+)
RNA-Seq Expression	HG10019345
Synteny	HG10019345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTTGGCGAAAGATATGCTCCGAAATCAAGTTTCGGAAGGGCGAATCGTGAAACAAGTCAAGAAGAAGCTACCGACAGCGTCGTCGAGGTCGGAGAAAAGGATTTGCTTGAAGAGGATTAAGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGACGATTGA

mRNA sequence

ATGGAAGTTTTGGCGAAAGATATGCTCCGAAATCAAGTTTCGGAAGGGCGAATCGTGAAACAAGTCAAGAAGAAGCTACCGACAGCGTCGTCGAGGTCGGAGAAAAGGATTTGCTTGAAGAGGATTAAGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGACGATTGA

Coding sequence (CDS)

ATGGAAGTTTTGGCGAAAGATATGCTCCGAAATCAAGTTTCGGAAGGGCGAATCGTGAAACAAGTCAAGAAGAAGCTACCGACAGCGTCGTCGAGGTCGGAGAAAAGGATTTGCTTGAAGAGGATTAAGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGACGATTGA

Protein sequence

MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKVRMMQALVHILNGSDD

Homology

[Close]

BLAST of HG10019345 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESME 60
          ME+LAKD     VS+ RI KQV KK     SR    SEKRICLKRI++LRKMIPKSESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFRETADYIVWLQMKVRMMQALVHILNGSDD 91
          LNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of HG10019345 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESME 60
          ME+LAKD     VS+ RI KQV KK    +  +S  SEKRICLKRI+RL+KM+PKSESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFRETADYIVWLQMKVRMMQALVHILNGSDD 91
          LNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of HG10019345 vs. NCBI nr
Match: XP_034911859.1 (transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protein D5086_0000325720 [Populus alba])

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-09
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 45  GRILMKRRARAEGSSTRAGYGI-ERRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRV 104

Query: 76  RMMQALVHILNGSDD 91
           R+MQ +V +L GSDD
Sbjct: 105 RVMQIMVKVLTGSDD 118

[Close]

BLAST of HG10019345 vs. NCBI nr
Match: KAG6787023.1 (hypothetical protein POTOM_008650 [Populus tomentosa])

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-09
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 45  GRILMKRRARAEGSSTRAGYGI-ERRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRV 104

Query: 76  RMMQALVHILNGSDD 91
           R+MQ +V +L GSDD
Sbjct: 105 RVMQIMVKVLTGSDD 118

[Close]

BLAST of HG10019345 vs. NCBI nr
Match: XP_002301522.1 (transcription factor UPBEAT1 [Populus trichocarpa] >PNT50574.1 hypothetical protein POPTR_002G193300 [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 63  GRILMKRRARAEGSTVRSGYGI-ERRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRV 122

Query: 76  RMMQALVHILNGSDD 91
           ++MQ +V +L GSDD
Sbjct: 123 KVMQIMVKVLTGSDD 136

[Close]

BLAST of HG10019345 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 30/81 (37.04%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 8  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRET 67
          ++R Q +   +VK+  ++ +    +SR   R   +R+K L++++P +++ E L+GLFR+T
Sbjct: 16 LMRRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQT 75

Query: 68 ADYIVWLQMKVRMMQALVHIL 86
          ADYI+ L+MKV++MQ +V +L
Sbjct: 76 ADYILALEMKVKVMQTMVQVL 96

[Close]

BLAST of HG10019345 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 71/94 (75.53%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MEVLAKDMLRNQVSEGRIVKQVKKKLPTASSR----SEKRICLKRIKRLRKMIPKSESME 60
          ME+LAKD     VS+ RI KQV KK     SR    SEKRICLKRI++LRKMIPKSESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFRETADYIVWLQMKVRMMQALVHILNGSDD 91
          LNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of HG10019345 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MEVLAKDMLRNQVSEGRIVKQVKKK----LPTASSRSEKRICLKRIKRLRKMIPKSESME 60
          ME+LAKD     VS+ RI KQV KK    +  +S  SEKRICLKRI+RL+KM+PKSESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFRETADYIVWLQMKVRMMQALVHILNGSDD 91
          LNGLFRETADYIVWLQMKVRMMQALVH+LNGSD+
Sbjct: 61 LNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of HG10019345 vs. ExPASy TrEMBL
Match: A0A4V5ZXB7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   +S+R+   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 45  GRILMKRRARAEGSSTRAGYGI-ERRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRV 104

Query: 76  RMMQALVHILNGSDD 91
           R+MQ +V +L GSDD
Sbjct: 105 RVMQIMVKVLTGSDD 118

[Close]

BLAST of HG10019345 vs. ExPASy TrEMBL
Match: B9GSV5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 63  GRILMKRRARAEGSTVRSGYGI-ERRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRV 122

Query: 76  RMMQALVHILNGSDD 91
           ++MQ +V +L GSDD
Sbjct: 123 KVMQIMVKVLTGSDD 136

[Close]

BLAST of HG10019345 vs. ExPASy TrEMBL
Match: A0A3G0Z5L8 (Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=bHLH02 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 16  GRIVKQVKKKLPTASSRSEKRICLKRIKRLRKMIPKSESMELNGLFRETADYIVWLQMKV 75
           GRI+ + + +   ++ RS   I  +R++ L+K+IP SESM L+GLFRETADYI+ LQM+V
Sbjct: 63  GRILMKRRARAEGSTVRSGYGI-ERRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRV 122

Query: 76  RMMQALVHILNGSDD 91
           ++MQ +V +L GSDD
Sbjct: 123 KVMQIMVKVLTGSDD 136

[Close]

BLAST of HG10019345 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07
Identity = 30/81 (37.04%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 8  MLRNQVSEGRIVKQ--VKKKLPTASSRSEKRICLKRIKRLRKMIPKSESME-LNGLFRET 67
          ++R Q +   +VK+  ++ +    +SR   R   +R+K L++++P +++ E L+GLFR+T
Sbjct: 16 LMRRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQT 75

Query: 68 ADYIVWLQMKVRMMQALVHIL 86
          ADYI+ L+MKV++MQ +V +L
Sbjct: 76 ADYILALEMKVKVMQTMVQVL 96

The following BLAST results are available for this feature:

BLAST of HG10019345 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038125.1	3.8e-25	75.53	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KGN58133.1	3.8e-25	73.40	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
XP_034911859.1	6.5e-09	52.00	transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protei...	[more]
KAG6787023.1	6.5e-09	52.00	hypothetical protein POTOM_008650 [Populus tomentosa]	[more]
XP_002301522.1	2.5e-08	50.67	transcription factor UPBEAT1 [Populus trichocarpa] >PNT50574.1 hypothetical prot...	[more]

BLAST of HG10019345 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	1.4e-06	37.04	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of HG10019345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9M0	1.8e-25	75.53	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L8J6	1.8e-25	73.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A4V5ZXB7	3.2e-09	52.00	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1	[more]
B9GSV5	1.2e-08	50.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 ...	[more]
A0A3G0Z5L8	1.2e-08	50.67	Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=b...	[more]

BLAST of HG10019345 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	1.0e-07	37.04	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..87
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 12..87
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 30..82 e-value: 2.99558E-12 score: 54.1656

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019345.1	HG10019345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated