HG10019224 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019224
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr04: 18903425 .. 18903724 (+)
RNA-Seq ExpressionHG10019224
SyntenyHG10019224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAAGGTTGGTGTGTTAGCAATGGTGGTCATGCTGCTCATGGCCATTATTTCAGCTCAAGCCACCTCCTCTGCGGTCGGTGAGATGATTGAACTCCCGTTCGATGAGGCGAACGAGGTCGTCTCGACGAATATGGACGTGTGGCCAAGAAAAATGATGAAAGAAGGAAGAAATGGAGAAAATGGATTATGCCTGTTGATAGGCACTCCATGCAGCAGCGATGCAAACTGCTTACCTGGATGCAGCTGCAGAACCACCATAATACTAAAACTGGGATTATGTAGTCCCTTTTAA

mRNA sequence

ATGAGCAAGAAGGTTGGTGTGTTAGCAATGGTGGTCATGCTGCTCATGGCCATTATTTCAGCTCAAGCCACCTCCTCTGCGGTCGGTGAGATGATTGAACTCCCGTTCGATGAGGCGAACGAGGTCGTCTCGACGAATATGGACGTGTGGCCAAGAAAAATGATGAAAGAAGGAAGAAATGGAGAAAATGGATTATGCCTGTTGATAGGCACTCCATGCAGCAGCGATGCAAACTGCTTACCTGGATGCAGCTGCAGAACCACCATAATACTAAAACTGGGATTATGTAGTCCCTTTTAA

Coding sequence (CDS)

ATGAGCAAGAAGGTTGGTGTGTTAGCAATGGTGGTCATGCTGCTCATGGCCATTATTTCAGCTCAAGCCACCTCCTCTGCGGTCGGTGAGATGATTGAACTCCCGTTCGATGAGGCGAACGAGGTCGTCTCGACGAATATGGACGTGTGGCCAAGAAAAATGATGAAAGAAGGAAGAAATGGAGAAAATGGATTATGCCTGTTGATAGGCACTCCATGCAGCAGCGATGCAAACTGCTTACCTGGATGCAGCTGCAGAACCACCATAATACTAAAACTGGGATTATGTAGTCCCTTTTAA

Protein sequence

MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKEGRNGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF
Homology
BLAST of HG10019224 vs. NCBI nr
Match: KAE8649030.1 (hypothetical protein Csa_015018 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 7.9e-32
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 0

Query: 1   MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKE-GR 60
           M KKVG+LAM V++LM +ISA+ATSS VG +IELP DEA+EVV TNM++W RKMMKE GR
Sbjct: 4   MRKKVGLLAMAVLMLM-VISARATSSEVGGVIELPSDEASEVVPTNMEMWSRKMMKEGGR 63

Query: 61  NGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF 100
            G+NGLCL+IGTPC+SDANCL GC CRTT+ILKLGLCSPF
Sbjct: 64  KGDNGLCLIIGTPCNSDANCLSGCKCRTTLILKLGLCSPF 102

BLAST of HG10019224 vs. NCBI nr
Match: TYK29461.1 (hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 0

Query: 1   MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKEG-- 60
           MSKKVG+LAM V++LMA ISA ATSS V E+IELP DEAN VV+TNM++W RKMMKEG  
Sbjct: 5   MSKKVGLLAMAVLMLMA-ISAGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 61  RNGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF 100
           +   NGLCL++GTPC+SD NC  GC C+TT ILKLG+CSPF
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICSPF 104

BLAST of HG10019224 vs. NCBI nr
Match: KAA0044332.1 (hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 6.9e-28
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0

Query: 1   MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKEG-- 60
           MSKKVG LAM V++LMA ISA ATSS V E+IELP DEAN VV+TNM++W RKMMKEG  
Sbjct: 5   MSKKVGFLAMAVLMLMA-ISAGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 61  RNGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF 100
           +   NGLCL++GTPC+SD NC  GC C+TT ILKLG+CSPF
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICSPF 104

BLAST of HG10019224 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_014977 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-05
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 1  MSKKVGVLAMVVMLLMAIISAQATS-SAVGEMIELPFDEANEVVSTNMDVWPRKMMKEGR 60
          MSKK  V+  +V +L+   S +AT    + E  E+  DE N+     M   PRK+     
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNK-AGLEMIFAPRKLKLRNG 60

Query: 61 NGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLC 97
              G+CLL+G PC SDA+C  GC C+   +L +G C
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYC 96

BLAST of HG10019224 vs. ExPASy TrEMBL
Match: A0A5D3E1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00550 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 0

Query: 1   MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKEG-- 60
           MSKKVG+LAM V++LMA ISA ATSS V E+IELP DEAN VV+TNM++W RKMMKEG  
Sbjct: 5   MSKKVGLLAMAVLMLMA-ISAGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 61  RNGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF 100
           +   NGLCL++GTPC+SD NC  GC C+TT ILKLG+CSPF
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICSPF 104

BLAST of HG10019224 vs. ExPASy TrEMBL
Match: A0A5A7TM06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00550 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 0

Query: 1   MSKKVGVLAMVVMLLMAIISAQATSSAVGEMIELPFDEANEVVSTNMDVWPRKMMKEG-- 60
           MSKKVG LAM V++LMA ISA ATSS V E+IELP DEAN VV+TNM++W RKMMKEG  
Sbjct: 5   MSKKVGFLAMAVLMLMA-ISAGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 61  RNGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLCSPF 100
           +   NGLCL++GTPC+SD NC  GC C+TT ILKLG+CSPF
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICSPF 104

BLAST of HG10019224 vs. ExPASy TrEMBL
Match: A0A0A0KY29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 1  MSKKVGVLAMVVMLLMAIISAQATS-SAVGEMIELPFDEANEVVSTNMDVWPRKMMKEGR 60
          MSKK  V+  +V +L+   S +AT    + E  E+  DE N+     M   PRK+     
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNK-AGLEMIFAPRKLKLRNG 60

Query: 61 NGENGLCLLIGTPCSSDANCLPGCSCRTTIILKLGLC 97
              G+CLL+G PC SDA+C  GC C+   +L +G C
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYC 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649030.17.9e-3275.00hypothetical protein Csa_015018 [Cucumis sativus][more]
TYK29461.14.0e-2869.31hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa][more]
KAA0044332.16.9e-2869.31hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa][more]
KGN52756.16.3e-0537.11hypothetical protein Csa_014977 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E1J32.0e-2869.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TM063.3e-2869.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KY293.0e-0537.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019224.1HG10019224.1mRNA