HG10019000 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019000
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 13598172 .. 13600404 (-)
RNA-Seq Expression	HG10019000
Synteny	HG10019000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGACAACTCGATCAATTAACCATTGCTGCTCCTCCACCTCAACCTTTGGATAATAGAGCAAACGCAAAAAACAGGAATCAAAATCAAGAAAGACAGCAAAAGCATGCAAGAATCAATAATAGGGAGCACTCACAATCTCCAGCAAGAAATCAAGCATTGGTAAACCTTCCAAGAATCCAAGAACTCCAGCAAGAAGATCAAGCTTCAGAATCCTCAAGTGATAATGAGGAACTACTTATTAGAAGATTTCCAGAAAATAGACTACTTGTAAGAGTTGATCATTACCAAGAGCGTGAGAACCAACCACAAGACTATAAGATGAAGATTGATATGCCAACATTTAATAGGAAAATCGACCTCGAAGCATTTTTCGATTGGGTTAAATGTGGTGACAGCGTCTTTGACTACATGAACACACCGGAGAACCAAAAGGTTAAGGTAGTTACATTCAAGTTGAAATCAGGAGCTTCTGCTTCGTGGGATCAAATCCAAGCTAACAGACAATTAACAGGAAAACATCCAAATTAAGAGCTCGCCTCGAATGCTTCATAAGATGAAGGAAAGATTTATGCCCGCTAATTATGAGCTTACTTTATGAACAATACCAAAAATGCAAGCAAGGAAACCAAAGTGTAGCAGATTATACTTAAGAATTTCATCGACTAAGTCCTTGGACAATATTAAATGAAAGTGAAAACTACCAAAAGTGCCTCACACAACCATCAACATCAACCATCTTCTTTTTGCCGATGATACTCTCTTGTTCTCCATCAACAATGATGAGAAAATTGAAAACCCCATCAACTTGATAAGCCTGTTTGAAGAGGCATCTGGCCTCAACATCAATAGACACAAATCTGAATTTTTGGGTATCACTTGTGATGATGCATGGGTGGAGAATATTGCCTCGAAATTTGATTGCAAGGTGGGAGGTTGGCCGACCACCTACTTGGGACTTCCTCTTTTTGGAAAACCATCAACATTGACTTTCTTGGCAACCGGTTTTAGACAAGATTACCAAAAGATTACAATCATGGCAGTACAATCATCTCTCAAAAAGTGGCAGAATGACACTTTTGAAAGCCACTCTTTCCAATCAGCCGATTTATTATCTTTCTTTAAAGCGCCTTCTGAAGGAGTTGAAAACATTGAAAAATATTTTAGAAACTTCCTATGGGCTGGTTACAGGGGAAGCAAATTATCTCACCTTATTAGATGGGATAATTTAAAGAAACCGTTAAATGCTGGAAGGCTTGGCAATCACTGATATCAAACAGCAAAACAAGGCCATTCTTACAAAATGGGTGTGGCGTTTTCATTCTAAAAAAGAAGCTCTCCGGAGGATTTTGATTAAAGCTAAATATGGGTCTTACCAATTTGACTTAAAGGCATCTGAAACGAGGAATCCAACATCGAGAAGCCTTTGGAAACACATTATAAAACAGGACCTCATTTATGAGAATATTCAATGCATCCTTGGGAATGGTGAGGCTACTGCCTTTTGGAATGATTTTTGGATTGGTGATGGCCCCCTTAATCAAAAATACCCCAAACTTTATCATCTTTCTAGGGACAAAGATGCTTCTGTGGCTCAGGTTTGGGATGCTGTTCTTTGCTCATGGAACATTCATTTCAGAAGTCATTTTACCGAGAAAGAGATTTCTGAATGGGCGGGTTTCACCCACTCCATGCCCATCATTGAACTATCAACTAATATTGATAAGGTCATGGAAACTCAACAAAGATGTCTTCCCCACCAAATCTTTATACAAAAGCATTAATCCAAGTGGTCTCTCGATGGATGCTGATTTGTTTTAGAAGATTTGGAGCTGCCCTTGCCCGAACTGTGTCAAATTCCTTATGTGGGAAATTTTTAATTCTTGTCTCAATACCATGGACCGTCTTCAAAATCAATGCCCTTGGATCAATTTATCCCCCTGTTGGTGCAGCCTCTGTCAAACCAACAATGAATCAACAATTCACTTATTCATCAACTGCCCCTTCACTACAAGGATTTGGTCAGAAATTTTTGCGGCTTTTAACTGGACAGTGGTCTTCACAAATGACATCTTTAGCTGGTTCAGATTATTATTCTATGATCCTCCCTTTAAAGCCTCCAAAAAGAAATTTTGGAAGTGCATTATCGCTACGATTTTGTGAAAGATATGGGATGAAAGAAATTCACGCATCTTCTAAGAGAAATACAAGACTTCAAGAGACATATTAG

mRNA sequence

ATGAGCAGACAACTCGATCAATTAACCATTGCTGCTCCTCCACCTCAACCTTTGGATAATAGAGCAAACGCAAAAAACAGGAATCAAAATCAAGAAAGACAGCAAAAGCATGCAAGAATCAATAATAGGGAGCACTCACAATCTCCAGCAAGAAATCAAGCATTGGTAAACCTTCCAAGAATCCAAGAACTCCAGCAAGAAGATCAAGCTTCAGAATCCTCAAGTCATGGAAACTCAACAAAGATGTCTTCCCCACCAAATCTTTATACAAAAGCATTAATCCAAGTGGTCTCTCGATGGATGCTGATTTGTTTTAGAAGATTTGGAGCTGCCCTTGCCCGAACTGTGTCAAATTCCTTATGTGGGAAATTTTTAATTCTTGTCTCAATACCATGGACCGTCTTCAAAATCAATGCCCTTGGATCAATTTATCCCCCTGTTGGTGCAGCCTCTGTCAAACCAACAATGAATCAACAATTCACTTATTCATCAACTGCCCCTTCACTACAAGGATTTGGTCAGAAATTTTTGCGGCTTTTAACTGGACAGTGGTCTTCACAAATGACATCTTTAGCTGGTTCAGATTATTATTCTATGATCCTCCCTTTAAAGCCTCCAAAAAGAAATTTTGGAAGTGCATTATCGCTACGATTTTGTGAAAGATATGGGATGAAAGAAATTCACGCATCTTCTAAGAGAAATACAAGACTTCAAGAGACATATTAG

Coding sequence (CDS)

ATGAGCAGACAACTCGATCAATTAACCATTGCTGCTCCTCCACCTCAACCTTTGGATAATAGAGCAAACGCAAAAAACAGGAATCAAAATCAAGAAAGACAGCAAAAGCATGCAAGAATCAATAATAGGGAGCACTCACAATCTCCAGCAAGAAATCAAGCATTGGTAAACCTTCCAAGAATCCAAGAACTCCAGCAAGAAGATCAAGCTTCAGAATCCTCAAGTCATGGAAACTCAACAAAGATGTCTTCCCCACCAAATCTTTATACAAAAGCATTAATCCAAGTGGTCTCTCGATGGATGCTGATTTGTTTTAGAAGATTTGGAGCTGCCCTTGCCCGAACTGTGTCAAATTCCTTATGTGGGAAATTTTTAATTCTTGTCTCAATACCATGGACCGTCTTCAAAATCAATGCCCTTGGATCAATTTATCCCCCTGTTGGTGCAGCCTCTGTCAAACCAACAATGAATCAACAATTCACTTATTCATCAACTGCCCCTTCACTACAAGGATTTGGTCAGAAATTTTTGCGGCTTTTAACTGGACAGTGGTCTTCACAAATGACATCTTTAGCTGGTTCAGATTATTATTCTATGATCCTCCCTTTAAAGCCTCCAAAAAGAAATTTTGGAAGTGCATTATCGCTACGATTTTGTGAAAGATATGGGATGAAAGAAATTCACGCATCTTCTAAGAGAAATACAAGACTTCAAGAGACATATTAG

Protein sequence

MSRQLDQLTIAAPPPQPLDNRANAKNRNQNQERQQKHARINNREHSQSPARNQALVNLPRIQELQQEDQASESSSHGNSTKMSSPPNLYTKALIQVVSRWMLICFRRFGAALARTVSNSLCGKFLILVSIPWTVFKINALGSIYPPVGAASVKPTMNQQFTYSSTAPSLQGFGQKFLRLLTGQWSSQMTSLAGSDYYSMILPLKPPKRNFGSALSLRFCERYGMKEIHASSKRNTRLQETY

Homology

The following BLAST results are available for this feature:

BLAST of HG10019000 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019000 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019000 vs.


Match Name	E-value	Identity	Description

BLAST of HG10019000 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019000.1	HG10019000.1	mRNA