HG10018783 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018783
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCYSTM domain-containing protein
LocationChr04: 8388660 .. 8388925 (+)
RNA-Seq ExpressionHG10018783
SyntenyHG10018783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCCTATCCCTATCCAGCCCCGCAAGGTATTTTTCTCACACGTTACGTTTTAGCAGTTGAGTTATGTTCAGGTTGACCTCGTTCTAAGTTTCGTTTGATTTAGTATTCTGGGTGTTGTGAAATTTATTTGCAGGAGGGTATTATCAAGGGCCACCCGTGATGGCGCCACCACAATATGCCGCCCCGCCGCCCAAAAGACAGCCGGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTCTTTGTTGA

mRNA sequence

ATGAGTGATCCCAAATATGCCTATCCCTATCCAGCCCCGCAAGGAGGGTATTATCAAGGGCCACCCGTGATGGCGCCACCACAATATGCCGCCCCGCCGCCCAAAAGACAGCCGGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTCTTTGTTGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTATCCAGCCCCGCAAGGAGGGTATTATCAAGGGCCACCCGTGATGGCGCCACCACAATATGCCGCCCCGCCGCCCAAAAGACAGCCGGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTCTTTGTTGA

Protein sequence

MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC
Homology
BLAST of HG10018783 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWY 46
          MSDPKYAYPYP PQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW+
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWF 45

BLAST of HG10018783 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.2 bits (230), Expect = 7.1e-16
Identity = 43/52 (82.69%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          MSDPKYAYPYP P GGYYQGPPVMAPPQYAAPPPKRQPGFLEG  A     C
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLAALCCCC 52

BLAST of HG10018783 vs. NCBI nr
Match: KAF9609677.1 (hypothetical protein IFM89_017856 [Coptis chinensis])

HSP 1 Score: 87.4 bits (215), Expect = 3.9e-14
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          M+DPKYAYPYP P  GYYQGPPVMAPPQYAAPPP+RQPGFLEG  A     C
Sbjct: 1  MNDPKYAYPYPYPAQGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCC 52

BLAST of HG10018783 vs. NCBI nr
Match: PQP99874.1 (uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 uncharacterized protein Pyn_09821 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MSDPKYAYPYPAP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          MSDPKY YPYPA  QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A     C
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCC 53

BLAST of HG10018783 vs. NCBI nr
Match: CAB4283958.1 (unnamed protein product [Prunus armeniaca] >CAB4314388.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MSDPKYAYPYPAP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          M+DPKY YPYPA  QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A     C
Sbjct: 1  MNDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCC 53

BLAST of HG10018783 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWY 46
          MSDPKYAYPYP PQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW+
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWF 45

BLAST of HG10018783 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.5e-14
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MSDPKYAYPYPAP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          MSDPKY YPYPA  QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A     C
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCC 53

BLAST of HG10018783 vs. ExPASy TrEMBL
Match: A0A6J5XT78 (CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS39353 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MSDPKYAYPYPAP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          M+DPKY YPYPA  QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A     C
Sbjct: 1  MNDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCC 53

BLAST of HG10018783 vs. ExPASy TrEMBL
Match: B9SMJ5 (CYSTM domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0230320 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          MSDPKYAYPYPA   GYYQGPPVMAPPQYAAPPP+RQPGFLEG  A     C
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCC 50

BLAST of HG10018783 vs. ExPASy TrEMBL
Match: A0A2P5AQS9 (Cysteine-rich transmembrane CYSTM domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_309210 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVLC 53
          MSDPKYAYPYPA   GYYQGPPVMAPPQYAAPPP+R+PGFLEG  A     C
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPGFLEGCLAALCCCC 50

BLAST of HG10018783 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-09
Identity = 35/62 (56.45%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 1  MSDPKYAYPYPAPQGGYYQG--PPVMAPPQY--------AAPPPKRQPGFLEGWYAKKLV 53
          MSDPKYAYPYPAP G Y QG  PPV  PPQY          PPP R+ GFLEG  A    
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCC 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031406.11.7e-1795.56cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
KAG6571885.17.1e-1682.69hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF9609677.13.9e-1476.92hypothetical protein IFM89_017856 [Coptis chinensis][more]
PQP99874.11.1e-1377.36uncharacterized protein Pyn_05607 [Prunus yedoensis var. nudiflora] >PQQ01249.1 ... [more]
CAB4283958.12.5e-1375.47unnamed protein product [Prunus armeniaca] >CAB4314388.1 unnamed protein product... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SN048.2e-1895.56Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A314Y8T55.5e-1477.36CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN... [more]
A0A6J5XT781.2e-1375.47CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3935... [more]
B9SMJ52.1e-1378.85CYSTM domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0230320 PE=3... [more]
A0A2P5AQS94.6e-1376.92Cysteine-rich transmembrane CYSTM domain containing protein OS=Parasponia anders... [more]
Match NameE-valueIdentityDescription
AT4G33660.16.8e-0956.45unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044850Cysteine-rich and transmembrane domain-containing protein WIH1/2-likePANTHERPTHR31568RCG49325, ISOFORM CRA_Acoord: 1..47
NoneNo IPR availablePANTHERPTHR31568:SF105CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKEcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018783.1HG10018783.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane