HG10018026 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018026
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosome biogenesis protein
LocationChr03: 29259647 .. 29261469 (+)
RNA-Seq ExpressionHG10018026
SyntenyHG10018026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTCGGATTTGAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGTGAGTTTGGATTTCTGACATTGACTTGATTGTGTTCGCTCCATAAATTGCTTCACCGTCTTTGTTTCAGAAACCTTTAATCTTATTGACACTATTTGCTTTGGAATGACTTGAGCTTCACTTATGAAGTGAAAAAAAAAATCTCAGGTGATATTTGAAAGAAACATTGTTTGAATACAGAAATAATAAACAAATGACAAAACATATTGATAGCATCCTGCTAATATTTTGCAAATTGCAAAAGATGTAGAACAAAATTGGCCATCTAGTGCAGGTTATGAAACGAATACAACCCTAATTTTACTTCAGTTGTCAGTTGTCACCCTACAACTTGTTTACTACTTCTGCAAAGTAAATATGAATATGTTTTCAGTTGATTTTTTGATTTCCGAATAAATGGAAGGTCACCTTTCAGAATAGCAAATCAAGTTATATTTCAATACCATTTTATTGTTTATGATACCATAAACAATTAAACGTTAAATCTGGCTACATGCAGGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAAACTATTACTAAGGTAAAATTATTCATTCTATTACTTTGCACATAGCGTTATATTTTTTCATTAGTGATGGCTATTCAGTTTTGTTATTATTTATTTTCATTTTTGTTATCGATGGCTTTTAATACTCTTCCATTTTTATTATGTGAATAGTTCTCAAACAATTTTCTGTTTCTCGTTTTTATCTGTTAAACTGTTTGTAGATTTGTAGATATAATTTTCTTGAAATCTCAATGGTACGGCACATGGTGATAAGCACAATAAACATTAGGTTCAGCAAAGAGATCATGTATCCATTATAGTTGGTGCCATCTAATAATTTGTGTCAAAATTAGCCCTAGTTTTCTTATAACCAAACGTTGCAAGGTTATAAATTGATCATGGAATACCCTCGAATTTTCCTCTACAATGAAAATTTTGGCATGGAGTGCTTCAATCTTTCTACTTTACTTTTAAATCTGAACATCTGAAAATAATTGCTTCAGTATTGTGAAGTGATTGTCAATTAACGAGGAGCTTAGGAGTTGGCTCTAGTTCGAATGGGAGCATTTTGATTGGCTCAATGGATCAATGTTCTTATTCTTGGCCTTTCTTTCAAATAATGTGAAAAGACTAATGCTCAAAGTACAAGAAACCAAGAAAAATGGAAAGCATATAATTAAGCATGAAAAATAAAATCATTCCAATTTTAACATATATCTTAGATGGATGATTGGGTTCTGTTAGTCTTAAAGCGTAATCCTAGATGTTCTTATTTACTCTTTTAGTATTCTGCTACAATTGATTATGTGTAACAGAAGAAAAACCATCGAAGACGTAAAAGGGACTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCTTCCTCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATGTAAGTTGATTGTTACCATTATTTGGACATGTTTAACAATTTATCCTTATTTATGTATTGTAATGATGGGTTCATTTGATCAGATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGAATACGAATAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCAAAAGCCTCTGCAAGACCTTCATCTATGGAGATGTGA

mRNA sequence

AGGTCGGATTTGAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAAACTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGGGACTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCTTCCTCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGAATACGAATAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCAAAAGCCTCTGCAAGACCTTCATCTATGGAGATGTGA

Coding sequence (CDS)

AGGTCGGATTTGAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTGCTACCTTAAATGCTCAAAAAACTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGGGACTTGAAGGCTTTTGATCTTTCTACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCTTCCTCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAAAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGAATACGAATAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCAAAAGCCTCTGCAAGACCTTCATCTATGGAGATGTGA

Protein sequence

RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPIEEPKKKNTNKNGSKKRKEKKSKASARPSSMEM
Homology
[Close]
BLAST of HG10018026 vs. NCBI nr
Match: XP_004144346.1 (putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN54744.1 hypothetical protein Csa_012867 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 142/152 (93.42%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD+KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 7   RSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQPI
Sbjct: 67  PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPI 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKKSKASA+PSSMEM
Sbjct: 127 EEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]
BLAST of HG10018026 vs. NCBI nr
Match: XP_038900086.1 (putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900088.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900089.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900091.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.6e-68
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD KSKAERKFEKKVQFYERVGETI+TLNAQKTITKKK+HRRRKRDLKAFDLSTLSEFL
Sbjct: 7   RSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLSTLSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEAPKQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+AIQLHLEGTQPI
Sbjct: 67  PGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHLEGTQPI 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK TNKNGSKKRKEKKSKAS RPSSMEM
Sbjct: 127 EEPKKK-TNKNGSKKRKEKKSKASPRPSSMEM 157

[Close]
BLAST of HG10018026 vs. NCBI nr
Match: KAA0062508.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 141/152 (92.76%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           +SD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 215 QSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 274

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQPI
Sbjct: 275 PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPI 334

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKKSKA ARPSSMEM
Sbjct: 335 EEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]
BLAST of HG10018026 vs. NCBI nr
Match: KAA0037498.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01973.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 7   RSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQP 
Sbjct: 67  PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPT 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKK KASARPSSMEM
Sbjct: 127 EEPKKKKMNKNGSKKRKEKKLKASARPSSMEM 158

[Close]
BLAST of HG10018026 vs. NCBI nr
Match: XP_038883686.1 (putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >XP_038883687.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >XP_038883688.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 137/152 (90.13%), Postives = 145/152 (95.39%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD KSKAERKFEKKVQFYERVGETI+TLNAQKTI+KKK++RRRKRDLKAFDLS LSEFL
Sbjct: 7   RSDSKSKAERKFEKKVQFYERVGETISTLNAQKTISKKKSYRRRKRDLKAFDLSILSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGL APKQKPS+AE KLNCKSRLKF+LKERKQM TVLNHPVFQADPL+AI+LHLEGTQPI
Sbjct: 67  PGL-APKQKPSAAESKLNCKSRLKFMLKERKQMSTVLNHPVFQADPLRAIRLHLEGTQPI 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK TNKNGSKKRKEKKS ASARPSSMEM
Sbjct: 127 EEPKKKKTNKNGSKKRKEKKSNASARPSSMEM 157

[Close]
BLAST of HG10018026 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 142/152 (93.42%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD+KSKAERKFEKKVQFYERVGETI TLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 7   RSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQPI
Sbjct: 67  PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPI 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKKSKASA+PSSMEM
Sbjct: 127 EEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]
BLAST of HG10018026 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 141/152 (92.76%), Postives = 148/152 (97.37%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           +SD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 215 QSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 274

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQPI
Sbjct: 275 PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPI 334

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKKSKA ARPSSMEM
Sbjct: 335 EEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]
BLAST of HG10018026 vs. ExPASy TrEMBL
Match: A0A5D3BQL6 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00780 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD+KSKAERKFEKKVQFYERVGE+IATLNAQK+ITKKKNHRRRKRDLKAFDLSTLSEFL
Sbjct: 7   RSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGLEA KQKPS+AELKLNCKSRLKFILKERKQMGTVLNHPVFQADPL+A+QLHLEGTQP 
Sbjct: 67  PGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPT 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EEPKKK  NKNGSKKRKEKK KASARPSSMEM
Sbjct: 127 EEPKKKKMNKNGSKKRKEKKLKASARPSSMEM 158

[Close]
BLAST of HG10018026 vs. ExPASy TrEMBL
Match: A0A6J1E5M8 (putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=LOC111430153 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.3e-59
Identity = 128/152 (84.21%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKRDLKAFDL+ LSEFL
Sbjct: 7   RSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKK-LRRRKRDLKAFDLTALSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGL+APKQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL AI LHL+ TQP+
Sbjct: 67  PGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPV 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EE KKK TN+NGSKKRKEKKSKA+A+PSSMEM
Sbjct: 127 EETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]
BLAST of HG10018026 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.3e-59
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   RSDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFL 60
           RSD KSKAERKFEKK+QFYERVGETIATLNAQKTITKKK  RRRKRDLKAFDL+ LSEFL
Sbjct: 7   RSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKK-LRRRKRDLKAFDLTALSEFL 66

Query: 61  PGLEAPKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQPI 120
           PGL+ PKQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL AI LHLE TQP+
Sbjct: 67  PGLKTPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPV 126

Query: 121 EEPKKKNTNKNGSKKRKEKKSKASARPSSMEM 153
           EE KKK TN+NGSKKRKEKKSKA+A+PSSMEM
Sbjct: 127 EETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]
BLAST of HG10018026 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-30
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 0 

Query: 2   SDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLP 61
           S++ +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP
Sbjct: 8   SEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLTNLSEFLP 67

Query: 62  GLEA-PKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQ-P 121
              A  K    + ELK+NCK R K +L E +++  VL+HP FQADP+ +I  HL   Q P
Sbjct: 68  EFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQHLLSQQPP 127

Query: 122 IEEPKKKNTNKNGSKKRKEKKSKASA 146
           +EE  KK TN NGSKKR +KK K  +
Sbjct: 128 VEEKPKKKTNTNGSKKRNKKKGKTDS 153

[Close]
BLAST of HG10018026 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-30
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 0 

Query: 2   SDLKSKAERKFEKKVQFYERVGETIATLNAQKTITKKKNHRRRKRDLKAFDLSTLSEFLP 61
           S++ +K+++KFEKK+QFY +V +T+ +L+ QK I KKK  R R++ LKA+DL+ LSEFLP
Sbjct: 8   SEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLTNLSEFLP 67

Query: 62  GLEA-PKQKPSSAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLKAIQLHLEGTQ-P 121
              A  K    + ELK+NCK R K +L E +++  VL+HP FQADP+ +I  HL   Q P
Sbjct: 68  EFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQHLLSQQPP 127

Query: 122 IEEPKKKNTNKNGSKKRKEKKSKASA 146
           +EE  KK TN NGSKKR +KK K  +
Sbjct: 128 VEEKPKKKTNTNGSKKRNKKKGKTDS 153

The following BLAST results are available for this feature:
BLAST of HG10018026 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144346.12.8e-6893.42putative ribosome biogenesis protein slx9-like [Cucumis sativus] >KGN54744.1 hyp... [more]
XP_038900086.13.6e-6895.39putative ribosome biogenesis protein slx9-like [Benincasa hispida] >XP_038900087... [more]
KAA0062508.11.8e-6792.76putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa][more]
KAA0037498.12.3e-6792.76putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01... [more]
XP_038883686.11.6e-6390.13putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida] >X... [more]
BLAST of HG10018026 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10018026 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1131.3e-6893.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1[more]
A0A5A7V4K78.6e-6892.76Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3BQL61.1e-6792.76Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1E5M83.3e-5984.21putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1JDX44.3e-5984.21putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
BLAST of HG10018026 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01640.19.2e-3050.00unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bac... [more]
AT2G01640.29.2e-3050.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 4..116
e-value: 6.2E-10
score: 39.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..152
NoneNo IPR availablePANTHERPTHR31109PROTEIN FAM207Acoord: 2..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018026.1HG10018026.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0030686 90S preribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0030688 preribosome, small subunit precursor