HG10018003 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10018003
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationChr03: 28917972 .. 28918325 (+)
RNA-Seq ExpressionHG10018003
SyntenyHG10018003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATCTTGTGAGCGATCCTTTGGGTGTTCCTCTCACATCCTCTGAAACAACTGTTCTTAGACCTCCTGTTGCTAAGAACTCCACCGATTCTGCCTATGTTAAGAAAAATCTTGATGCGTATGAAGTTAGATCTGGAACCTGCCCTGTCGACTCCCCACCATTTGCTAACCTGTTGAACCAAGTAACTTCAATAAAGATGGACCACAATAATTTCCTGTTGTGGCAAAATATTGCTCTCCCGATCCTTCATAGCTACAAGCTTGAGGGACATTTCACAGGTAAGGATGAATGTCTGATCGACCAAAAGTGTACAAATGATGAAATTATTAAATTCAATACTTGTATGTGA

mRNA sequence

ATGGCTAATCTTGTGAGCGATCCTTTGGGTGTTCCTCTCACATCCTCTGAAACAACTGTTCTTAGACCTCCTGTTGCTAAGAACTCCACCGATTCTGCCTATGTTAAGAAAAATCTTGATGCGTATGAAGTTAGATCTGGAACCTGCCCTGTCGACTCCCCACCATTTGCTAACCTGTTGAACCAAGTAACTTCAATAAAGATGGACCACAATAATTTCCTGTTGTGGCAAAATATTGCTCTCCCGATCCTTCATAGCTACAAGCTTGAGGGACATTTCACAGGTAAGGATGAATGTCTGATCGACCAAAAGTGTACAAATGATGAAATTATTAAATTCAATACTTGTATGTGA

Coding sequence (CDS)

ATGGCTAATCTTGTGAGCGATCCTTTGGGTGTTCCTCTCACATCCTCTGAAACAACTGTTCTTAGACCTCCTGTTGCTAAGAACTCCACCGATTCTGCCTATGTTAAGAAAAATCTTGATGCGTATGAAGTTAGATCTGGAACCTGCCCTGTCGACTCCCCACCATTTGCTAACCTGTTGAACCAAGTAACTTCAATAAAGATGGACCACAATAATTTCCTGTTGTGGCAAAATATTGCTCTCCCGATCCTTCATAGCTACAAGCTTGAGGGACATTTCACAGGTAAGGATGAATGTCTGATCGACCAAAAGTGTACAAATGATGAAATTATTAAATTCAATACTTGTATGTGA

Protein sequence

MANLVSDPLGVPLTSSETTVLRPPVAKNSTDSAYVKKNLDAYEVRSGTCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDECLIDQKCTNDEIIKFNTCM
Homology
[Close]
BLAST of HG10018003 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-09
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 53  SPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           SPP   LLNQ+TSIKMD  NFLLWQN+ALPIL SYKL  + TG   C
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPC 70

[Close]
BLAST of HG10018003 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 44  VRSGTCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           + S T    +PP   +LNQ+ S+K+D  N+LLWQ +ALPIL SYKL+GH T +++C
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQC 63

[Close]
BLAST of HG10018003 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-08
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 44  VRSGTCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           V S T    +PP   LLNQ++S+K+D  N+LLW+ +ALPI+ SYK EG+ TG++ C
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPC 63

[Close]
BLAST of HG10018003 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.5e-08
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 48  TCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           T    +PP   LLNQ++S+K+D  N+LLW+ +ALPI+ SYK EGH TG++ C
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPC 63

[Close]
BLAST of HG10018003 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.5e-08
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 53  SPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           +PP   +LNQ+T+IK+D +N+LLW+ +ALPIL  YKLEGH TG+  C
Sbjct: 21  NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPC 67

[Close]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 53  SPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           SPP   LLNQ+TSIKMD  NFLLWQN+ALPIL SYKL  + TG   C
Sbjct: 24  SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPC 70

[Close]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 44  VRSGTCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           V S T    +PP   LLNQ++S+K+D  N+LLW+ +ALPI+ SYK EG+ TG++ C
Sbjct: 8   VESSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPC 63

[Close]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-08
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 53  SPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           +PP   +LNQ+T+IK+D +N+LLW+ +ALPIL  YKLEGH TG+  C
Sbjct: 21  NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPC 67

[Close]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-08
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 48  TCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           T    +PP   LLNQ++S+K+D  N+LLW+ +ALPI+ SYK EGH TG++ C
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPC 63

[Close]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-08
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 48  TCPVDSPPFANLLNQVTSIKMDHNNFLLWQNIALPILHSYKLEGHFTGKDEC 100
           T    +PP   LLNQ++S+K+D  N+LLW+ +ALPI+ SYK EGH TG++ C
Sbjct: 12  TTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPC 63

The following BLAST results are available for this feature:
BLAST of HG10018003 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.18.5e-0968.09uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_031745012.11.9e-0850.00uncharacterized protein LOC116405217 [Cucumis sativus][more]
XP_016901223.13.2e-0850.00PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo][more]
KAA0060627.15.5e-0851.92Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa][more]
KAA0066132.15.5e-0857.45putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
BLAST of HG10018003 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10018003 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW44.1e-0968.09uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A1S4DZ261.6e-0850.00uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=... [more]
A0A5A7VCS12.7e-0857.45Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A5D3BVJ12.7e-0851.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1E02.7e-0851.92Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ... [more]
BLAST of HG10018003 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10018003.1HG10018003.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity