HG10017968 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017968
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SWIB domain-containing protein
Location	Chr03: 28278384 .. 28280602 (-)
RNA-Seq Expression	HG10017968
Synteny	HG10017968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAAAAATCTTCAGGTTCTTCTTTTGTCTCATTTTTATGAGTTTTTTTTTTTTTTAATCTGTTTTAGATGCATATTGAATCTGCCGCTATCAACCTGACAGAGACCTCCCTTGTTTAATCTACTTTCAAAATATTTGTGGTAGATTCTACGTTTTATGCTGGTCAAAGTATAGATTAAAATGGGGAACAGAGCAGGAGAAGAAAGATTATAAGTTTGAAGACTCGGGATGAAAAAGAACCTCCTTAAGTGAAAGTTATGAGAAACTGATGGAGGGTCAAGGTCCTAGACAAAATACAGTTAATAAAACCAAGTTTTTGCAATGTAAGATTGTATAGGCTGAGAAAGACTTTACAAACTTACAAAGAGTGATAGAACCCAAACAGAACTTTGATGATATTGCAACGTAAAAGATTGAATATCTACAAAATAATTCAAGTATTTGAGGTACTTGAAACTCCTGTGACCTGACTATACACGACAATCTCAACAATTCTTTGTGGGGACAATACCAGCTTATGTGCAACTCGACTAATCTCACAAGATAACTCACCTGATCCTACAATATTTGAGTGTCAAAGAAACTGGTTAGATATTAAATCCTAGGTAGGTGGCTACTATGGACCAAATCCATCCCCTCTAAGCCCTTTATCAAACTCAATGCCCTTTATTTACCACTAGGTTAACCCATGATGGTTGATGGGCTTACTACGGATGCCGACTAACATATATTTTTTCTTATTAAATAAGACCAGAAATTCCTTCAAAAACCTATAAAGCCCTATTACAACTCCCAAAGGACATCTCCTTATGCATAAGGGGAAATTGTATTATAAGCCGAAATGAGTTATATGGATGATTTCTATCCGTCCCAGCAAGCAACCCTTCTACTAAACCTTTATCCACGCCTCTCAAAATAAGTCTGTTAAGCACATCCACAATCACCCCAAAAGAGAATGATGTTTGATTTTACTTCTAAATTCAATAGCTTTTGATTTTTGCACCAGTTTGCAGTACACTTTATGACTGTTCCACTGCCATATGATATGATCTTGGGAAGCTGGAAGTACTTGAAACTTTAATGAAGGAGCATCTTTTTTTTTTTTCTTTTATAAGTGTTATAAATATGTTTCTGCTAACCCATAATTGGCTTTCTTTATTCTGATAAAAGGTTATTGATGTGTATCTTTCTTGTCTAGGATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTTCCCAAAAATCCCAAGTGAGTTATGCTTGCAATTTAACCTCTGGCACCTCCATAATGGCGTCTTCAAGTCGCCAATGTTTAGAACATTTAGCCTCAGTGGTTTCTGTACCAAATATTTTCAGAAAATTGTTTGACTTAACTCTCTCTTTGTGCCTCATGGCCTTCTGTATATATTATATTTGGCTTCACTTGACTTTTTATCAATTTTGAAGTTTCTTGCATTATTCTCAATTAACATGGAATTGATTGGAACTTCTGTGTAAATATAAGATGGAACTTTAACAAAAATTCAAAACTGATCCGTTTTATAATCAACACAGAAGAGAAGCAGATCAACACAGAAGAGAAGCAGCAAAGTGAATGAGGTGAAACATAATGAAACAATGTTCATCCAATCTTTGGTATATGACTCTCATTTGCAATCCCTTCTTTGTTCCCTTTATCTTTGGTATATGACTCTCATTTGGTTTCAATTTACTTTTGGTTTTATTTTAGAAAACTAAAAGAATTGATAAGTATAGTTCAAATCAATTAAATGGACAAGATTTGTTCTTTTGCTACAAATAATGTTTGATACATTTGTTTGTTCTGCAGCAAGGCAAGTGTTTGATGTCTTCTTAAGTGGCCTTCTATCATTAGGAAGCCACCATATATCTTCTTTTGGCTCATCAAAGCCCATGGTCAAGAAAGATATGATGTTCATTTTCAAATATTGTGATTTCAGGGGCGAATCTCCCAAGTTCTGTTCTTGA

mRNA sequence

ATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAAAAATCTTCAGGATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTTCCCAAAAATCCCAAGGGCGAATCTCCCAAGTTCTGTTCTTGA

Coding sequence (CDS)

ATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAAAAATCTTCAGGATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTTCCCAAAAATCCCAAGGGCGAATCTCCCAAGTTCTGTTCTTGA

Protein sequence

MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKGESPKFCS

Homology

[Close]

BLAST of HG10017968 vs. NCBI nr
Match: XP_038882021.1 (upstream activation factor subunit spp27 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 5.5e-47
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDP
Sbjct: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. NCBI nr
Match: XP_008449303.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449305.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. NCBI nr
Match: XP_031739586.1 (upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739588.1 upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 5.7e-44
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]

BLAST of HG10017968 vs. NCBI nr
Match: KGN55149.2 (hypothetical protein Csa_012337 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 5.7e-44
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDP
Sbjct: 90  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 149

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Sbjct: 150 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 189

[Close]

BLAST of HG10017968 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K++L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSI 76
           + L   L EF+G  Q+SR    K +W YIK  +LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]

BLAST of HG10017968 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-07
Identity = 26/77 (33.77%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVD 83
           V L  +L   +G+ +++R    + +W+YIK  NLQ+P NK  ++CDEKL+ ++LGK   +
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LVELPELIKLHFPKNPK 101
           + E+ +++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]

BLAST of HG10017968 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 5   RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKN 64
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK  +LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 65  VVICDEKLKSILLGKPKVDLVELPELIKLH 95
            ++CDEK++ I  GK K+ +  + +L+  H
Sbjct: 165 EILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]

BLAST of HG10017968 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. ExPASy TrEMBL
Match: A0A0A0L2E1 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.8e-44
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]

BLAST of HG10017968 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.1e-44
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K++L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. ExPASy TrEMBL
Match: A0A151SBL4 (Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+RMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP+VDL ELP LIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]

BLAST of HG10017968 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK 101
           TNKNVVICDEKL+SILLGK KV+L ELP LIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of HG10017968 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-43
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKGESPK 106
            NKNVVICDEKLKSILLGK +V+LV+LP LIKLHFPK  K  S K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQKKNSQK 105

[Close]

BLAST of HG10017968 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-43
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDP 60
           MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKGESPK 106
            NKNVVICDEKLKSILLGK +V+LV+LP LIKLHFPK  K  S K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQKKNSQK 105

[Close]

BLAST of HG10017968 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.8e-15
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 20  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGK 79
           ++ +V +   L  F+G++++SR    K +W YIK  NLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  PKVDLVELPELIKLHFPKN 99
             V  +E+ +L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of HG10017968 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-13
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 30  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPE 89
           L  F G+ +++R    K VW Y+K  NLQ+P NK  + CD+KLK+I  GK KV + E+ +
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPKN 99
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]

BLAST of HG10017968 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 30  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPE 89
           +++ VG  +I R    K +W+YIK  +LQDP NK  ++CDEKLK I  GK +V  +E+ +
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 90  LIKLHF 96
           LI  HF
Sbjct: 138 LIGPHF 143

The following BLAST results are available for this feature:

BLAST of HG10017968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882021.1	5.5e-47	96.00	upstream activation factor subunit spp27 [Benincasa hispida]	[more]
XP_008449303.1	2.0e-44	91.00	PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304...	[more]
XP_031739586.1	5.7e-44	92.00	upstream activation factor subunit spp27 [Cucumis sativus] >XP_031739587.1 upstr...	[more]
KGN55149.2	5.7e-44	92.00	hypothetical protein Csa_012337 [Cucumis sativus]	[more]
XP_022928748.1	1.7e-43	91.00	upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up...	[more]

BLAST of HG10017968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	2.6e-07	46.15	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	4.5e-07	33.77	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	3.8e-06	30.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of HG10017968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BL41	9.5e-45	91.00	upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221...	[more]
A0A0A0L2E1	2.8e-44	92.00	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 S...	[more]
A0A6J1ELR1	8.1e-44	91.00	upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A151SBL4	1.1e-43	89.00	Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 ...	[more]
A0A6J1HY33	1.4e-43	91.00	upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of HG10017968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26810.1	1.0e-43	81.90	SWIB/MDM2 domain superfamily protein	[more]
AT4G26810.2	1.0e-43	81.90	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	7.8e-15	40.51	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	5.6e-13	44.93	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.4e-11	45.45	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 20..100 e-value: 1.7E-11 score: 54.2
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 15..104 e-value: 8.5E-22 score: 79.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 13..99
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 24..95 e-value: 6.3E-23 score: 80.4
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 19..97 score: 18.43187
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 2..101
None	No IPR available	PANTHER	PTHR13844:SF45	OS09G0133000 PROTEIN	coord: 2..101
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 24..95 e-value: 3.54855E-22 score: 80.2801

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017968.1	HG10017968.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus