HG10017927 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017927
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDUF4283 domain-containing protein
LocationChr03: 26174745 .. 26175104 (-)
RNA-Seq ExpressionHG10017927
SyntenyHG10017927
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGGAATTGCTGCGGATTTTGAACACCTGAGTTTATTAGGGGTAGAAGAAAATATATCGGTTCTAATCGATCCCGAAATAGTCCGAGAGGTAGATAATCAACTCAATCATTGCCTCTTTGGAAAGCTTCTGGCGCCGAGAGCAATTTCAGGAAATGTAATAAAGAACACATTTTTTAATGCTTGGAGATTCGACAATGGAATCAGTGTTGAAGCCATCGGAAGAAATCTCTTTTTGTTCACTTTTGAAAAAATCCTGGATAAAAAATGGGGTTTAAGTGCTGGACCCTGGTTGTTTGATAAACATCTTCTTGTTTTAGAAGAACCAGAGATTGACTTAAAGCCTTCAGAATAA

mRNA sequence

ATGGATGAGGGAATTGCTGCGGATTTTGAACACCTGAGTTTATTAGGGGTAGAAGAAAATATATCGGTTCTAATCGATCCCGAAATAGTCCGAGAGGTAGATAATCAACTCAATCATTGCCTCTTTGGAAAGCTTCTGGCGCCGAGAGCAATTTCAGGAAATGTAATAAAGAACACATTTTTTAATGCTTGGAGATTCGACAATGGAATCAGTGTTGAAGCCATCGGAAGAAATCTCTTTTTGTTCACTTTTGAAAAAATCCTGGATAAAAAATGGGGTTTAAGTGCTGGACCCTGGTTGTTTGATAAACATCTTCTTGTTTTAGAAGAACCAGAGATTGACTTAAAGCCTTCAGAATAA

Coding sequence (CDS)

ATGGATGAGGGAATTGCTGCGGATTTTGAACACCTGAGTTTATTAGGGGTAGAAGAAAATATATCGGTTCTAATCGATCCCGAAATAGTCCGAGAGGTAGATAATCAACTCAATCATTGCCTCTTTGGAAAGCTTCTGGCGCCGAGAGCAATTTCAGGAAATGTAATAAAGAACACATTTTTTAATGCTTGGAGATTCGACAATGGAATCAGTGTTGAAGCCATCGGAAGAAATCTCTTTTTGTTCACTTTTGAAAAAATCCTGGATAAAAAATGGGGTTTAAGTGCTGGACCCTGGTTGTTTGATAAACATCTTCTTGTTTTAGAAGAACCAGAGATTGACTTAAAGCCTTCAGAATAA

Protein sequence

MDEGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFNAWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEPEIDLKPSE
Homology
BLAST of HG10017927 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 3   EGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFN 62
           E + AD++   L   E+ I++ +D + V+  +  L + L GKLLA R IS +V+      
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 63  AWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEP 112
           AW+ ++ ++VE+IG+NLFLF F +  D    +  GPW FDK L+VL++P
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKP 112

BLAST of HG10017927 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 1   MDEGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTF 60
           M EG+   +E+ +L   EEN+ V +DP +V E   + N+CL GKLL+ R ++  V++N  
Sbjct: 1   MTEGLTDLWENFNLT-EEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVM 60

Query: 61  FNAWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLE 110
              W+   G+ V  IG NLF+F FE  L+K+      PW F+K LLVL+
Sbjct: 61  HMVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLK 108

BLAST of HG10017927 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 18  EENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFNAWRFDNGISVEAIGR 77
           EE+  V I  E    +  + + CL GKLL  R  +   +KNT  + W+   G+ V  IG 
Sbjct: 17  EEDAVVRIGGESTSLMMGKSDMCLVGKLLTRRPFNVEAMKNTLLSVWQPTKGMQVRVIGD 76

Query: 78  NLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEPEIDLKPSE 120
           NLF+F F  ++DK+  LS GPW FDKHLL+L E + +++PS+
Sbjct: 77  NLFVFVFGHVVDKRRVLSDGPWTFDKHLLMLGEMDPNVQPSD 118

BLAST of HG10017927 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 7.5e-13
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 18  EENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFNAWRFDNGISVEAIGR 77
           EE+  V I  +    +  + + CL GKLL  R  +   +KNT  + W+   G+ V  IG 
Sbjct: 17  EEDAVVRIGGDSTSLMMGKSDMCLVGKLLTRRPFNVEAMKNTLLSVWQPTKGMQVRVIGD 76

Query: 78  NLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEPEIDLKPSE 120
           NLF+F F  ++DK+  LS GPW FDKHLL+L E + +++PS+
Sbjct: 77  NLFVFVFGHVVDKRRVLSNGPWTFDKHLLMLGEMDPNVQPSD 118

BLAST of HG10017927 vs. NCBI nr
Match: OMP10859.1 (hypothetical protein COLO4_04212 [Corchorus olitorius])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 1   MDEGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTF 60
           M E +   ++  SL   EE+  V++DP+++    ++   CL GKLL+ RA++  V++N  
Sbjct: 1   MSEALEDMWKKFSLTEEEES-DVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNIL 60

Query: 61  FNAWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEE 111
              W+   G+ ++A+G  LF+F FEK ++K       PW F+K LLVL E
Sbjct: 61  HWVWKLSGGLQIQAVGDKLFIFQFEKEIEKDRVFQQSPWSFNKALLVLGE 109

BLAST of HG10017927 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 3   EGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFN 62
           E + AD++   L   E+ I++ +D + V+  +  L + L GKLLA R IS +V+      
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 63  AWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEP 112
           AW+ ++ ++VE+IG+NLFLF F +  D    +  GPW FDK L+VL++P
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKP 112

BLAST of HG10017927 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 1   MDEGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTF 60
           M EG+   +E+ +L   EEN+ V +DP +V E   + N+CL GKLL+ R ++  V++N  
Sbjct: 1   MTEGLTDLWENFNLT-EEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVM 60

Query: 61  FNAWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLE 110
              W+   G+ V  IG NLF+F FE  L+K+      PW F+K LLVL+
Sbjct: 61  HMVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLK 108

BLAST of HG10017927 vs. ExPASy TrEMBL
Match: A0A1R3KUZ6 (DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.3e-12
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 1   MDEGIAADFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTF 60
           M E +   ++  SL   EE+  V++DP+++    ++   CL GKLL+ RA++  V++N  
Sbjct: 1   MSEALEDMWKKFSLTEEEES-DVVVDPKLIANTLDEGKACLIGKLLSRRAVNIEVMRNIL 60

Query: 61  FNAWRFDNGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEE 111
              W+   G+ ++A+G  LF+F FEK ++K       PW F+K LLVL E
Sbjct: 61  HWVWKLSGGLQIQAVGDKLFIFQFEKEIEKDRVFQQSPWSFNKALLVLGE 109

BLAST of HG10017927 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 8   DFEHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFNAWRFD 67
           ++++  L   EE  ++ +D        ++L   L GKL   R I+  V+KNT   AW+ +
Sbjct: 9   EWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTAWKLE 68

Query: 68  -NGISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVLEEPEIDLKPSE 120
            N   V+++G NLFLF+F + LD+     +GPW FD+ L+++ +P   + PSE
Sbjct: 69  NNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSE 121

BLAST of HG10017927 vs. ExPASy TrEMBL
Match: F6GZ60 (14_3_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_00s0199g00140 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 10  EHLSLLGVEENISVLIDPEIVREVDNQLNHCLFGKLLAPRAISGNVIKNTFFNAWRFDNG 69
           E+LSLL V+E   +++D           + CL G+ L  R I+ N +K+   + WR + G
Sbjct: 179 ENLSLL-VDEEEELVLDTGENGSTTQSFDLCLIGRFLTDRMINFNAMKHCLASVWRLEKG 238

Query: 70  ISVEAIGRNLFLFTFEKILDKKWGLSAGPWLFDKHLLVL 109
           I ++ I + LFLF F  I+D K  L  GPW FD HLL+L
Sbjct: 239 ICIKEINKQLFLFQFFHIVDLKRVLEGGPWTFDNHLLIL 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.11.4e-1438.53uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
OMO61345.11.2e-1340.37reverse transcriptase [Corchorus capsularis][more]
XP_028122006.13.4e-1341.18uncharacterized protein LOC114319195 [Camellia sinensis][more]
XP_028124075.17.5e-1340.20uncharacterized protein LOC114321128 [Camellia sinensis][more]
OMP10859.11.1e-1135.45hypothetical protein COLO4_04212 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU556.6e-1538.53uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1R3GTB55.6e-1440.37Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV... [more]
A0A1R3KUZ65.3e-1235.45DUF4283 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_04212... [more]
A0A6J1DX301.2e-1133.63uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
F6GZ603.4e-1139.3914_3_3 domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_00s0199g00140... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 30..110
e-value: 8.0E-13
score: 48.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017927.1HG10017927.1mRNA