HG10017763 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017763
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDBD_Tnp_Mut domain-containing protein
LocationChr03: 21632459 .. 21632767 (+)
RNA-Seq ExpressionHG10017763
SyntenyHG10017763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAACTTCCAATAGTTGTTTTCCATAATGGTCAGTGGAATGATCGACAGTGCTATGTAGATTACAAAACTATTGGTGTTTTGGTTGACGAGGCGATGCGTTTTGACTCTTTTGTTAACTTCATACAAATGGAAACTCAACTTCATTCATCTATTGAACTTTCAGTTTTATTGGATTTAGGTAGTACTGGGGTTCAACATGTTGTCAAGATTCTTGAAGATAAAGATGTATGTTATCTATTTGATTGTCATGTCATTGCCATATCATTGATATTTGATTGTCATGTGATCTTCATTAGATATTAA

mRNA sequence

ATGGTTAAACTTCCAATAGTTGTTTTCCATAATGGTCAGTGGAATGATCGACAGTGCTATGTAGATTACAAAACTATTGGTGTTTTGGTTGACGAGGCGATGCGTTTTGACTCTTTTGTTAACTTCATACAAATGGAAACTCAACTTCATTCATCTATTGAACTTTCAGTTTTATTGGATTTAGGTAGTACTGGGGTTCAACATGTTGTCAAGATTCTTGAAGATAAAGATGTATGTTATCTATTTGATTGTCATGTCATTGCCATATCATTGATATTTGATTGTCATGTGATCTTCATTAGATATTAA

Coding sequence (CDS)

ATGGTTAAACTTCCAATAGTTGTTTTCCATAATGGTCAGTGGAATGATCGACAGTGCTATGTAGATTACAAAACTATTGGTGTTTTGGTTGACGAGGCGATGCGTTTTGACTCTTTTGTTAACTTCATACAAATGGAAACTCAACTTCATTCATCTATTGAACTTTCAGTTTTATTGGATTTAGGTAGTACTGGGGTTCAACATGTTGTCAAGATTCTTGAAGATAAAGATGTATGTTATCTATTTGATTGTCATGTCATTGCCATATCATTGATATTTGATTGTCATGTGATCTTCATTAGATATTAA

Protein sequence

MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLHSSIELSVLLDLGSTGVQHVVKILEDKDVCYLFDCHVIAISLIFDCHVIFIRY
Homology
BLAST of HG10017763 vs. NCBI nr
Match: KAA0062637.1 (uncharacterized protein E6C27_scaffold79G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAM-RFDSFVNFIQMETQLHSSIELSVLL 60
          MVKL ++VFH+GQW+++Q YVDYKT  VLVDE +  FDSFVN I+ E Q+ S IELSVLL
Sbjct: 1  MVKLAVIVFHSGQWDEQQSYVDYKTNCVLVDEVISSFDSFVNLIRTEIQVESCIELSVLL 60

Query: 61 DLGSTGVQHVVKILEDKDVCY 81
           +GS GVQHV+KI+E+KDV +
Sbjct: 61 PIGSNGVQHVLKIVENKDVTW 81

BLAST of HG10017763 vs. NCBI nr
Match: TYJ96591.1 (uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAM-RFDSFVNFIQMETQLHSSIELSVLL 60
          MVKL ++VFH+GQW+++Q YVDYKT  VLVDE +  FDSFVN I+ E Q+ S IELSVLL
Sbjct: 1  MVKLAVIVFHSGQWDEQQSYVDYKTNCVLVDEVISSFDSFVNLIRTEIQVESCIELSVLL 60

Query: 61 DLGSTGVQHVVKILEDKDVCY 81
           +GS  VQHV+KI+E+KDV +
Sbjct: 61 PIGSNSVQHVLKIVENKDVTW 81

BLAST of HG10017763 vs. NCBI nr
Match: TYK27852.1 (Mutator-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKTIGVLVDE M F++FV+ I  E +     SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTIGVLVDEMMSFENFVSLILREVRFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q+VV+I EDKDV +
Sbjct: 61 LLDYGITDIQNVVQIQEDKDVTW 83

BLAST of HG10017763 vs. NCBI nr
Match: KAA0066702.1 (uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKT GVLVDE M F+ FV+ I  E +     SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTTGVLVDEMMCFEIFVSLILREVRFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q+VV+I EDKDV +
Sbjct: 61 LLDYGITDIQNVVQIQEDKDVTW 83

BLAST of HG10017763 vs. NCBI nr
Match: KAA0059897.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKT GVLVDE M F++FV+ I  E       SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTTGVLVDEMMSFENFVSLILREVLFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q VV+I EDKDV +
Sbjct: 61 LLDYGITNIQTVVQIQEDKDVTW 83

BLAST of HG10017763 vs. ExPASy TrEMBL
Match: A0A5A7V6N4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001490 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAM-RFDSFVNFIQMETQLHSSIELSVLL 60
          MVKL ++VFH+GQW+++Q YVDYKT  VLVDE +  FDSFVN I+ E Q+ S IELSVLL
Sbjct: 1  MVKLAVIVFHSGQWDEQQSYVDYKTNCVLVDEVISSFDSFVNLIRTEIQVESCIELSVLL 60

Query: 61 DLGSTGVQHVVKILEDKDVCY 81
           +GS GVQHV+KI+E+KDV +
Sbjct: 61 PIGSNGVQHVLKIVENKDVTW 81

BLAST of HG10017763 vs. ExPASy TrEMBL
Match: A0A5D3BD68 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00090 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.0e-19
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAM-RFDSFVNFIQMETQLHSSIELSVLL 60
          MVKL ++VFH+GQW+++Q YVDYKT  VLVDE +  FDSFVN I+ E Q+ S IELSVLL
Sbjct: 1  MVKLAVIVFHSGQWDEQQSYVDYKTNCVLVDEVISSFDSFVNLIRTEIQVESCIELSVLL 60

Query: 61 DLGSTGVQHVVKILEDKDVCY 81
           +GS  VQHV+KI+E+KDV +
Sbjct: 61 PIGSNSVQHVLKIVENKDVTW 81

BLAST of HG10017763 vs. ExPASy TrEMBL
Match: A0A5D3DWG1 (Mutator-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00290 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKTIGVLVDE M F++FV+ I  E +     SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTIGVLVDEMMSFENFVSLILREVRFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q+VV+I EDKDV +
Sbjct: 61 LLDYGITDIQNVVQIQEDKDVTW 83

BLAST of HG10017763 vs. ExPASy TrEMBL
Match: A0A5A7T3G5 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00710 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-17
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKT GVLVDE M F++FV+ I  E       SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTTGVLVDEMMSFENFVSLILREVLFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q VV+I EDKDV +
Sbjct: 61 LLDYGITNIQTVVQIQEDKDVTW 83

BLAST of HG10017763 vs. ExPASy TrEMBL
Match: A0A5D3DAW8 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001090 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-17
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MVKLPIVVFHNGQWNDRQCYVDYKTIGVLVDEAMRFDSFVNFIQMETQLH---SSIELSV 60
          M+KLPIVVFH+GQW+D   Y++YKT GVLVDE M F++FV+ I  E       SSI+LS+
Sbjct: 1  MIKLPIVVFHSGQWDDTNSYLNYKTTGVLVDEMMSFENFVSLILREVLFDASPSSIQLSI 60

Query: 61 LLDLGSTGVQHVVKILEDKDVCY 81
          LLD G T +Q VV+I EDKDV +
Sbjct: 61 LLDYGITNIQTVVQIQEDKDVTW 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062637.12.1e-1964.20uncharacterized protein E6C27_scaffold79G001490 [Cucumis melo var. makuwa][more]
TYJ96591.11.0e-1862.96uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa][more]
TYK27852.11.1e-1759.04Mutator-like transposase [Cucumis melo var. makuwa][more]
KAA0066702.11.6e-1657.83uncharacterized protein E6C27_scaffold271G00350 [Cucumis melo var. makuwa][more]
KAA0059897.11.6e-1657.83protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6N41.0e-1964.20SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BD685.0e-1962.96SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DWG15.5e-1859.04Mutator-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7T3G57.9e-1757.83Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DAW87.9e-1757.83Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017763.1HG10017763.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding