HG10017686 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10017686
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationChr03: 18887601 .. 18888077 (+)
RNA-Seq ExpressionHG10017686
SyntenyHG10017686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGACAAATGTTTGGGATTTGTGTTATTTTCAAATGGTCATATGATTGATGGTGTTGAATATGACCAACCAGCTAGTGGAGGTTTTAGCATAAATGTGAACAGTGGAATAGTTTTTGAACAATTCATTGAAATGGTAGGGATGTCACTTGGTGTAGATATGAGAGCAAATCAGTTAGAAATAATATATAGACATCCTAATCCAACACCATCAGGATCAGTAAGGTTTATGCCATTCCCTATTCCTGATGAACAAGCAATGAATCTGATGTTTTCAATCGCACTGCCACTCCCAAACTTAGTGGATTTATATGTTAATGTGAGTAGGGTAGGGTTTGATATAAACTTGAATGCACAACCCTTTAGTCAATTTGAAGACCCGATGGACCCTGATCCTGAATCAGTTGTACCAGCCTGTGATGATGAAGGTATGGTGGCTAATAATCAATACAGGGATTTTAAACACAGAGACTGA

mRNA sequence

ATGACAGACAAATGTTTGGGATTTGTGTTATTTTCAAATGGTCATATGATTGATGGTGTTGAATATGACCAACCAGCTAGTGGAGGTTTTAGCATAAATGTGAACAGTGGAATAGTTTTTGAACAATTCATTGAAATGGTAGGGATGTCACTTGGTGTAGATATGAGAGCAAATCAGTTAGAAATAATATATAGACATCCTAATCCAACACCATCAGGATCAGTAAGGTTTATGCCATTCCCTATTCCTGATGAACAAGCAATGAATCTGATGTTTTCAATCGCACTGCCACTCCCAAACTTAGTGGATTTATATGTTAATGTGAGTAGGGTAGGGTTTGATATAAACTTGAATGCACAACCCTTTAGTCAATTTGAAGACCCGATGGACCCTGATCCTGAATCAGTTGTACCAGCCTGTGATGATGAAGGTATGGTGGCTAATAATCAATACAGGGATTTTAAACACAGAGACTGA

Coding sequence (CDS)

ATGACAGACAAATGTTTGGGATTTGTGTTATTTTCAAATGGTCATATGATTGATGGTGTTGAATATGACCAACCAGCTAGTGGAGGTTTTAGCATAAATGTGAACAGTGGAATAGTTTTTGAACAATTCATTGAAATGGTAGGGATGTCACTTGGTGTAGATATGAGAGCAAATCAGTTAGAAATAATATATAGACATCCTAATCCAACACCATCAGGATCAGTAAGGTTTATGCCATTCCCTATTCCTGATGAACAAGCAATGAATCTGATGTTTTCAATCGCACTGCCACTCCCAAACTTAGTGGATTTATATGTTAATGTGAGTAGGGTAGGGTTTGATATAAACTTGAATGCACAACCCTTTAGTCAATTTGAAGACCCGATGGACCCTGATCCTGAATCAGTTGTACCAGCCTGTGATGATGAAGGTATGGTGGCTAATAATCAATACAGGGATTTTAAACACAGAGACTGA

Protein sequence

MTDKCLGFVLFSNGHMIDGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPESVVPACDDEGMVANNQYRDFKHRD
Homology
BLAST of HG10017686 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-47
Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = 0

Query: 1   MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRA 60
           M DK LGF+LF NG+MI   DG++YDQPA GGF+I+VNSGIVFEQFIE+VG S+G+D+R 
Sbjct: 1   MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 61  NQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINL 120
           + +EIIYRHP+ TPSG +RFMPFPIP+EQAM  MFSIA+P+ N+V LYVNVSRV  DINL
Sbjct: 61  SDIEIIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRVSLDINL 120

Query: 121 NAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK 156
           N++ F Q ED      PD E V     DDE M+ANN   DF+
Sbjct: 121 NSKSFCQLEDRTQVIVPDSELVASLVYDDEEMMANNDNIDFR 162

BLAST of HG10017686 vs. NCBI nr
Match: TYK20962.1 (hypothetical protein E5676_scaffold1293G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-28
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM  NQ+EIIYRHPN + SGSVRFM FPI +EQAMN MFSI LP  N+V LY
Sbjct: 1   MVGLSLGVDMSLNQIEIIYRHPNLSSSGSVRFMSFPISNEQAMNTMFSIDLPFRNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEGMVANNQYRDFK 156
           + VSRVG  INLN +  S++ + +  DPESV  P C +E +VANN+Y+DF+
Sbjct: 61  MTVSRVGLGINLNVE--SEYVEHIHVDPESVAQPVCGEEEIVANNEYKDFR 109

BLAST of HG10017686 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-27
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFMPFPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS V   INLN +P    E+ +D +PES   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMVDTAINLNVEP-RYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFR 110

BLAST of HG10017686 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRF+PFPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFIPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS V   INLN +P    E+ +D +PES   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMVDTAINLNVEP-RYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFR 110

BLAST of HG10017686 vs. NCBI nr
Match: ADN34152.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0037868.1 hypothetical protein E6C27_scaffold36G00320 [Cucumis melo var. makuwa] >TYJ98006.1 hypothetical protein E5676_scaffold487G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFM FPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMNSSQIEIIYRHPNLTASGTVRFMSFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS +   INLN +P    E+ +D DP+S   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMIDSAINLNVEP-KYVEEYVDVDPKSDAPPVCHEEEMVATNEYTEFR 110

BLAST of HG10017686 vs. ExPASy TrEMBL
Match: A0A5A7THR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00980 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = 0

Query: 1   MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRA 60
           M DK LGF+LF NG+MI   DG++YDQPA GGF+I+VNSGIVFEQFIE+VG S+G+D+R 
Sbjct: 1   MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 61  NQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINL 120
           + +EIIYRHP+ TPSG +RFMPFPIP+EQAM  MFSIA+P+ N+V LYVNVSRV  DINL
Sbjct: 61  SDIEIIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRVSLDINL 120

Query: 121 NAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK 156
           N++ F Q ED      PD E V     DDE M+ANN   DF+
Sbjct: 121 NSKSFCQLEDRTQVIVPDSELVASLVYDDEEMMANNDNIDFR 162

BLAST of HG10017686 vs. ExPASy TrEMBL
Match: A0A5D3DBJ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1293G00170 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM  NQ+EIIYRHPN + SGSVRFM FPI +EQAMN MFSI LP  N+V LY
Sbjct: 1   MVGLSLGVDMSLNQIEIIYRHPNLSSSGSVRFMSFPISNEQAMNTMFSIDLPFRNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEGMVANNQYRDFK 156
           + VSRVG  INLN +  S++ + +  DPESV  P C +E +VANN+Y+DF+
Sbjct: 61  MTVSRVGLGINLNVE--SEYVEHIHVDPESVAQPVCGEEEIVANNEYKDFR 109

BLAST of HG10017686 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFMPFPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS V   INLN +P    E+ +D +PES   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMVDTAINLNVEP-RYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFR 110

BLAST of HG10017686 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-27
Identity = 67/111 (60.36%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRF+PFPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFIPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS V   INLN +P    E+ +D +PES   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMVDTAINLNVEP-RYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFR 110

BLAST of HG10017686 vs. ExPASy TrEMBL
Match: A0A5D3BFY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00290 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0

Query: 46  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLY 105
           MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFM FPI +EQ MN MFSIALP PN+V LY
Sbjct: 1   MVGLSLGVDMNSSQIEIIYRHPNLTASGTVRFMSFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 106 VNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEGMVANNQYRDFK 156
           V VS +   INLN +P    E+ +D DP+S   P C +E MVA N+Y +F+
Sbjct: 61  VTVSMIDSAINLNVEP-KYVEEYVDVDPKSDAPPVCHEEEMVATNEYTEFR 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041167.12.1e-4762.96uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa][more]
TYK20962.16.5e-2862.16hypothetical protein E5676_scaffold1293G00170 [Cucumis melo var. makuwa][more]
TYJ95836.14.2e-2761.26serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0034014.11.2e-2660.36uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
ADN34152.12.7e-2659.46hypothetical protein [Cucumis melo subsp. melo] >KAA0037868.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THR51.0e-4762.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DBJ93.1e-2862.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAB02.0e-2761.26Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SS315.9e-2760.36DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BFY61.3e-2659.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10017686.1HG10017686.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development