Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATAAGATCACTGCTGAATTGGAGTTACTGAATCTATCAGGGGAAGAAGAAAGAACTTCAATTCCTCTTGATCTTGGGATTGCTCAAGAGATTAATGGTCATCTGAACCACTGTTTAATTGGGAAGCTTCTTCCACCAAAGATTATCGCTGGAAATGCTTTAAGGAATGCGTTCTTTAACGCGTGGAGGATGGATCATGGGATTAATATCTCGGTGATTGGAAAGAATATTTTTTTTATTTGTTTTTTAGAAACTTTTTGACAAGGAATGGGTGATGAGTGCTGGCCCATGGTTATTTGATAAACATTTGCTGATTTTAGAGGAATTGGGGGTTGATAGGCAGTTATCTGATTTAAATTTTAATAAGGTTGCTTTTTGGATTCGTTTGCTGAATTTGCCATTCGGATTCCAGAACAGACTAATGACCAGGAGAATTGGCGAAGAAATTGGGGGTTTTGTTGAAGTTGAGTGCGATCAGGAAGGCCTTTGCTGGGGAGATTCAATGAGAATTAAGGTTCACCTAGATATCTTGAAACCTTTACGCAGGGGTATCAAAGTGTTGTCGTCAAACGGGTTGGAAGAAAAATGGGTGGCGATTCGTTACGAAAGATTGCCTGATTTTTGTTACTCATGCGGTCGTATAGGTCATGTAACTAAGGATTGTGTAAATATTCCTGTCAACCCAGATACATTAAGTGGTAGTTCTGGATAATTTGGTCCATGGCTAAGGTTCCAAGGTGTACCGAGATCCCCCAAGAAACCCTCCAATCCTCCTAAAGATTCTGACACTAGTAAAGAGGTTGAAGAGGAGGATATTTTGCAACCTTCTGTTCCAGAAAACAAGGCGGCTCGATCTGAATTTCAAGAGGAATAGAGGAATCATGGTTCTTTAAATCTTGACCTAAATCAAGCTCAAGAGTTGGCTGACCAAATGGAGACTGATTTCGAAAGAACTTATTTTGTGAATCATACGTCTCAACTACCTCTTCAACAGGTTTCTGAGCTTGTAACTTCTACAGGTCATCCGGACCCAACTTTTAAAGATCCAAATGTAAACCTTTTGGTTTTCAAAACTCCTTTGAAAGGAGGTAACATGGAGGAAGTAAAATCCAGAAAGGCTACTAGGACCTGGAAGAACCGTATGAGATCATTAACAGATTCTCCTCTATAGGTTAAGCGGATTTATCCGCCAAATAGGAAATTAGGTGATGGGGAGAGTTCAAAGATTGGAGAAAGCAAACGTCTTCGAGCTGCTTCTTTAGAAACTTTGCTGAATGAGGCGATGCAGCCCTGCCCAAAACCATGAAGATCATTTGCTGGAATGCTAGGGGCTTGGGCAATCCTCGAGCATTCCATTCTTTGTGTAACCTTGTTCACACGACTAGTCCTGATATTTTGTTCGTTGCAGAAACTAAAGGTGGTTCTGATCTTTGCAATAGAGTCAAGCTTCGATGTAAATTCACTGGTTGCTTACCAGTGAATAGTGTGAGAGCTAAGGGTGGTTTATGTATTTTCTGGAGTGATACCGTGGTTTCAGAGATCAAATCTTTCTCTTCTCATCATATAGATGCGGTGTTTACATGGAAGAATAGTCATTGGAGATTTACAGGAGTGTATGGGTATCCTGAATCAGCTAGAAAGCATTTGACTTGGGAGTTGCTGAATAGGTTGAATAATAGAGAGGATGTTCCATGGTTGTTAGGGGGTGACTTCAACAATATTCTTTATGATAATGAAAAGTCTTGGGATCCCTCCACCCCCCCCCCCCCCCCGTGCTGTTCAGGCTCTTAG
mRNA sequence
ATGACAGATAAGATCACTGCTGAATTGGAGTTACTGAATCTATCAGGGGAAGAAGAAAGAACTTCAATTCCTCTTGATCTTGGGATTGCTCAAGAGATTAATGGTCATCTGAACCACTGTTTAATTGGGAAGCTTCTTCCACCAAAGATTATCGCTGGAAATGCTTTAAGGAATGCGTTCTTTAACGCGTGGAGGATGGATCATGGGATTAATATCTCGAAACTTTTTGACAAGGAATGGGTGATGAGTGCTGGCCCATGGTTATTTGATAAACATTTGCTGATTTTAGAGGAATTGGGGGTTGATAGGCAGTTATCTGATTTAAATTTTAATAAGGTTGCTTTTTGGATTCGTTTGCTGAATTTGCCATTCGGATTCCAGAACAGACTAATGACCAGGAGAATTGGCGAAGAAATTGGGGGTTTTGTTGAAGTTGAGTGCGATCAGGAAGGCCTTTGCTGGGGAGATTCAATGAGAATTAAGGTTCACCTAGATATCTTGAAACCTTTACGCAGGGGTATCAAAGTGTTGTCGTCAAACGGGTTGGAAGAAAAATGGGTGGCGATTCGTTACGAAAGATTGCCTGATTTTTGTTACTCATGCGGTCGTATAGGTCATGTAACTAAGGATTGTGTAAATATTCCTGTCAACCCAGATACATTAAGTGGTCATCCGGACCCAACTTTTAAAGATCCAAATGTAAACCTTTTGGTTTTCAAAACTCCTTTGAAAGGAGGTAACATGGAGGAAGTAAAATCCAGAAAGGCTACTAGGACCTGGAAGAACCCCCTGCCCAAAACCATGAAGATCATTTGCTGGAATGCTAGGGGCTTGGGCAATCCTCGAGCATTCCATTCTTTGTGTAACCTTGTTCACACGACTAGTCCTGATATTTTGTTCGTTGCAGAAACTAAAGGTGGTTCTGATCTTTGCAATAGAGTCAAGCTTCGATGTAAATTCACTGGTTGCTTACCAGTGAATAGTGTGAGAGCTAAGGGTGGTTTATGTATTTTCTGGAGTGATACCGTGGTTTCAGAGATCAAATCTTTCTCTTCTCATCATATAGATGCGGTGTTTACATGGAAGAATAGTCATTGGAGATTTACAGGAGTGTATGGGTATCCTGAATCAGCTAGAAAGCATTTGACTTGGGAGTTGCTGAATAGGTTGAATAATAGAGAGGATGTTCCATGGTTGTTAGGGGGTGACTTCAACAATATTCTTTATGATAATGAAAAGTCTTGGGATCCCTCCACCCCCCCCCCCCCCCCGTGCTGTTCAGGCTCTTAG
Coding sequence (CDS)
ATGACAGATAAGATCACTGCTGAATTGGAGTTACTGAATCTATCAGGGGAAGAAGAAAGAACTTCAATTCCTCTTGATCTTGGGATTGCTCAAGAGATTAATGGTCATCTGAACCACTGTTTAATTGGGAAGCTTCTTCCACCAAAGATTATCGCTGGAAATGCTTTAAGGAATGCGTTCTTTAACGCGTGGAGGATGGATCATGGGATTAATATCTCGAAACTTTTTGACAAGGAATGGGTGATGAGTGCTGGCCCATGGTTATTTGATAAACATTTGCTGATTTTAGAGGAATTGGGGGTTGATAGGCAGTTATCTGATTTAAATTTTAATAAGGTTGCTTTTTGGATTCGTTTGCTGAATTTGCCATTCGGATTCCAGAACAGACTAATGACCAGGAGAATTGGCGAAGAAATTGGGGGTTTTGTTGAAGTTGAGTGCGATCAGGAAGGCCTTTGCTGGGGAGATTCAATGAGAATTAAGGTTCACCTAGATATCTTGAAACCTTTACGCAGGGGTATCAAAGTGTTGTCGTCAAACGGGTTGGAAGAAAAATGGGTGGCGATTCGTTACGAAAGATTGCCTGATTTTTGTTACTCATGCGGTCGTATAGGTCATGTAACTAAGGATTGTGTAAATATTCCTGTCAACCCAGATACATTAAGTGGTCATCCGGACCCAACTTTTAAAGATCCAAATGTAAACCTTTTGGTTTTCAAAACTCCTTTGAAAGGAGGTAACATGGAGGAAGTAAAATCCAGAAAGGCTACTAGGACCTGGAAGAACCCCCTGCCCAAAACCATGAAGATCATTTGCTGGAATGCTAGGGGCTTGGGCAATCCTCGAGCATTCCATTCTTTGTGTAACCTTGTTCACACGACTAGTCCTGATATTTTGTTCGTTGCAGAAACTAAAGGTGGTTCTGATCTTTGCAATAGAGTCAAGCTTCGATGTAAATTCACTGGTTGCTTACCAGTGAATAGTGTGAGAGCTAAGGGTGGTTTATGTATTTTCTGGAGTGATACCGTGGTTTCAGAGATCAAATCTTTCTCTTCTCATCATATAGATGCGGTGTTTACATGGAAGAATAGTCATTGGAGATTTACAGGAGTGTATGGGTATCCTGAATCAGCTAGAAAGCATTTGACTTGGGAGTTGCTGAATAGGTTGAATAATAGAGAGGATGTTCCATGGTTGTTAGGGGGTGACTTCAACAATATTCTTTATGATAATGAAAAGTCTTGGGATCCCTCCACCCCCCCCCCCCCCCCGTGCTGTTCAGGCTCTTAG
Protein sequence
MTDKITAELELLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWRMDHGINISKLFDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKVLSSNGLEEKWVAIRYERLPDFCYSCGRIGHVTKDCVNIPVNPDTLSGHPDPTFKDPNVNLLVFKTPLKGGNMEEVKSRKATRTWKNPLPKTMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPVNSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWKNSHWRFTGVYGYPESARKHLTWELLNRLNNREDVPWLLGGDFNNILYDNEKSWDPSTPPPPPCCSGS
Homology
BLAST of HG10017614 vs. NCBI nr
Match:
GAU14523.1 (hypothetical protein TSUD_250650 [Trifolium subterraneum])
HSP 1 Score: 235.0 bits (598), Expect = 1.2e-57
Identity = 137/444 (30.86%), Postives = 217/444 (48.87%), Query Frame = 0
Query: 17 EEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWRMDHGINISKL- 76
EEE S D G ++++ L CL+G+ L K I N+++ W G+ I++
Sbjct: 15 EEEGFSFDFDEGGDEQVD--LRWCLVGRFLCEKAIHFNSMKLRMAELWTPVKGVTINETP 74
Query: 77 -----------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFWIRLLNLPF 136
D E V+ GPW+FD + L+LE++ + Q+ ++ V W+++ +LP
Sbjct: 75 SGKFLFHFAHPLDMEAVLKGGPWIFDNNTLLLEQVPLGMQVENIPLLHVNLWVQIHDLPT 134
Query: 137 GFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKVLSSNGLEE 196
G + ++ IG FVE + + W MRI+V +DI +PL++ KV + G E
Sbjct: 135 GLMKENVGIKLANYIGEFVEYDKNNNSSFWRQYMRIRVKVDIRQPLKKDTKVKNRVG-EW 194
Query: 197 KWVAIRYERLPDFCYSCGRIGHVTKDC-VNIPVNPDT-LSGHPDPTFKDPNVN----LLV 256
V +YE+L FC+ CG +GH C V + D + G DP +
Sbjct: 195 CMVKFKYEKLGIFCFVCGIMGHAENKCEVRYSMEQDDGIRGWSAEIRADPRRQGGRPVSR 254
Query: 257 FKTPLKGGNMEEVKSRKAT-------------RTWKNPLPKTMKIICWNARGLGNPRAFH 316
+ KGG +E+ +A ++W+ LP MKI+ WN RGL P A
Sbjct: 255 WLREEKGGRVEKHGGDQAAQPTFTGGVRVWVPQSWQPGLPGPMKILSWNCRGLSTPSAIP 314
Query: 317 SLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPVNSVRAKGGLCIFWSDTVVS 376
+L N+ + PDILF++ET + RV++ KF CL V+ GGL + W DT+
Sbjct: 315 NLRNIAQSHKPDILFLSETLSKAQAMERVRVDLKFNSCLSVDVEGRSGGLSVMWRDTINC 374
Query: 377 EIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLTWELLNRLNNREDVPWLLGGDF 429
+ ++S + I+ + K WR T YGYPE R+ W+LL +L + D+PW + GDF
Sbjct: 375 RVMNYSRNFINLIVEEKEQEEWRLTCYYGYPERGRRKQAWDLLRQLRDMSDLPWCIVGDF 434
BLAST of HG10017614 vs. NCBI nr
Match:
MCH82853.1 (hypothetical protein [Trifolium medium])
HSP 1 Score: 227.6 bits (579), Expect = 2.0e-55
Identity = 126/447 (28.19%), Postives = 205/447 (45.86%), Query Frame = 0
Query: 11 LLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWRMDHGI 70
L LS EE D ++ L CL+G+ + + I N++ + W+ G+
Sbjct: 6 LEGLSLHEEEEGFRFDFEADEDEQVDLRWCLVGRFICERSIHFNSMSIRMADLWKPVRGV 65
Query: 71 NISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFWIR 130
I + D E V++ PW+FD ++LILE++ + Q+ + V W++
Sbjct: 66 TIKEASAGKILFHFAHPLDMEAVLNGSPWIFDNNMLILEQVQLGMQIEHIPLFHVNMWVQ 125
Query: 131 LLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKVLS 190
+ +LP G + + IG FVE + W + MRI+V +D+ PL++ KV++
Sbjct: 126 VHDLPMGLMKEKVGIPLANYIGSFVEYDKKNNSTFWREFMRIRVKIDVRLPLKKDTKVMN 185
Query: 191 SNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC----------------VNIPVNPDT 250
G KW V +YE+L FC+ CG +GH C + +P T
Sbjct: 186 KEG---KWCTVKFKYEKLGTFCFVCGIMGHSENKCEVRFSMEQDDGTREWSAELRADPRT 245
Query: 251 LSGHPDPTF--KDPNVNLLVFKTPLKGGNMEEVKSR-----------KATRTWKNPLPKT 310
G P + +D + + G + S A ++W+ LP
Sbjct: 246 RGGRPVSRWLREDRGGPMRHHGGDVAGQSNPPANSNSVDPTVAELALNAQQSWQPGLPGP 305
Query: 311 MKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPVN 370
MKI+ WN RGL A +L N+ PDILF+AET + R+++ KF CL V+
Sbjct: 306 MKILSWNCRGLSTSSAIPNLSNIAQGYQPDILFLAETLSKNHTMERIRVNLKFQSCLSVD 365
Query: 371 SVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLTWEL 414
+ GGL + W D++ + ++S + I+ + K WR T YGYPE R+ W+L
Sbjct: 366 AEGRSGGLSVMWRDSISCRVMNYSRNFINLIVREKEEEEWRLTCYYGYPERGRRRQAWDL 425
BLAST of HG10017614 vs. NCBI nr
Match:
PNY16372.1 (ribonuclease H, partial [Trifolium pratense])
HSP 1 Score: 227.3 bits (578), Expect = 2.6e-55
Identity = 139/463 (30.02%), Postives = 218/463 (47.08%), Query Frame = 0
Query: 6 TAELELLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWR 65
T L+ L+L EEE + ++ L CLIG+ L K I N+++ + W+
Sbjct: 3 TPNLDGLSLH-EEEEDGFSFEFEEEEDAQVDLRWCLIGRFLCDKAIHVNSMKVRMADLWK 62
Query: 66 MDHGINISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKV 125
G+ I + D E V++ PW+FD ++L+LE + + Q+ + N V
Sbjct: 63 PVMGVTIKETKRGIFLFHFNHQIDMEEVLNGSPWIFDYNMLVLERVQLGMQIEQIPLNHV 122
Query: 126 AFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRG 185
+ W+++ NLP G + + IG F+E + + W + MRI+V +D+ PL++
Sbjct: 123 SLWVQVHNLPTGLMKERVGTTLANYIGEFMEYDKNNNTSFWREFMRIRVKIDVRLPLKKD 182
Query: 186 IKVLSSNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC-VNIPV-NPDTLSG-----H 245
KV + G KW V I+YE+L FC+ CG +GH C V + N D G
Sbjct: 183 AKVKNREG---KWCTVNIKYEKLGVFCFVCGIMGHAENKCQVRFAMENDDGRRGWSADLR 242
Query: 246 PDPTFKDPNVNLLVFKTPLKGGNMEEVKS------------------RKATRTWKNPLPK 305
+P + V K +GG+ E A +W+ LP
Sbjct: 243 AEPRRRGGRVTSRWLKE--EGGSGETAMGGHTAVPPNFQPEQSSGGPAYADVSWQPGLPG 302
Query: 306 TMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPV 365
MKI+ WN RGL P A +L N+ PDILF++ET + RV++ +++ CL V
Sbjct: 303 PMKILSWNCRGLSTPSAIPNLRNVAQGHQPDILFLSETLSKAQSMERVRVMLQYSSCLSV 362
Query: 366 NSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLTWE 425
+ GGL + W DT I ++S + I+ + WR T YGYPE +R+ W+
Sbjct: 363 DVEGRSGGLSVMWRDTTNCRIMNYSRNFINLIVDDPVKGEWRLTCYYGYPERSRRRQAWD 422
Query: 426 LLNRLNNREDVPWLLGGDFNNILYDNEKSWDPSTPPPPPCCSG 429
LL L + D+PW + GDFN++L +K + P P C+G
Sbjct: 423 LLRELRDMSDLPWCIVGDFNDLLSQEDKK--GTLPHPNWLCNG 457
BLAST of HG10017614 vs. NCBI nr
Match:
PNY17656.1 (ribonuclease H, partial [Trifolium pratense])
HSP 1 Score: 226.9 bits (577), Expect = 3.4e-55
Identity = 135/465 (29.03%), Postives = 219/465 (47.10%), Query Frame = 0
Query: 9 LELLNLSGEEERTSIPLDL---GIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWR 68
L+ L+L EEE + D G +++ L CL+G+ + + I N++ + W+
Sbjct: 6 LDGLSLHEEEEEEGLCFDFEEEGDDEQV--ELRWCLVGRFICERNIHFNSMSVRMADLWK 65
Query: 69 MDHGINISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKV 128
G+ I + +D E V++ GPW+FD ++L+LE++ + Q+ +
Sbjct: 66 PVRGVTIKEAKPGLFLFHFAHPYDMEAVLNGGPWIFDYNMLLLEQVQLGMQVDHIPLFHA 125
Query: 129 AFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRG 188
W+++ +LP G + + IG FVE + + W MR++V +D+ +PL++
Sbjct: 126 VMWVQIHDLPMGLMKEKVGIGLANYIGSFVEYDKNNNTSFWRQFMRVRVKIDVRQPLKKD 185
Query: 189 IKVLSSNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC----------------VNIP 248
KV + G KW V +YE+L FC+ CG +GH C ++
Sbjct: 186 YKVKNKEG---KWCTVNFKYEKLGVFCFVCGIMGHAENKCEVRYSMEQDDGRREWSADLR 245
Query: 249 VNPDTLSGHPDPTF--------KDPNVNLLVFKTPLKGG--NMEEVKSRKATRTWKNP-L 308
P G + +D V + + G N + + + K P L
Sbjct: 246 AEPKRQGGRQSSRWLKEDKGGREDQGRRDTVVQPNNQPGSSNTGPIGAELDPKIPKEPGL 305
Query: 309 PKTMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCL 368
P MKI+ WN RGL NP A +L N+ H PDILF++ET + RV++ KF CL
Sbjct: 306 PGPMKILSWNCRGLSNPSAIPNLHNIAHGHKPDILFLSETLSKAQSMERVRVNLKFQSCL 365
Query: 369 PVNSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLT 428
V+ GGL + W DT+ + ++S + I+ + K WR T YGYPE R+
Sbjct: 366 SVDVEGRSGGLSVMWRDTIKCRVLNYSRNFINLIVEEKEGEEWRLTCYYGYPERGRRRQA 425
BLAST of HG10017614 vs. NCBI nr
Match:
MCH80000.1 (hypothetical protein [Trifolium medium])
HSP 1 Score: 221.1 bits (562), Expect = 1.9e-53
Identity = 139/474 (29.32%), Postives = 220/474 (46.41%), Query Frame = 0
Query: 9 LELLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWRMDH 68
L+ L+L EEE S + ++++ L CLIG+ L + I N+++ + W+
Sbjct: 6 LDGLSLHEEEEGFSFDFEEEGDEQVD--LRWCLIGRFLCDRAIHSNSMKIRMADLWKPVR 65
Query: 69 GINISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFW 128
G+ I + D E V++ GPW FD ++LILE++ + Q+ D+ + W
Sbjct: 66 GVIIKEARPGTFLFHFDHPLDMEAVLNGGPWTFDNNMLILEQVQLGMQIEDIPLFHINLW 125
Query: 129 IRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKV 188
+++ NLP G + + IG FVE + + W MR++V +D+ +PL++ KV
Sbjct: 126 VQIHNLPTGLMKESVGVPLANYIGSFVEYDKNNNTSFWRQFMRVRVRVDVRQPLKKDTKV 185
Query: 189 LSSNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC-VNIPVNPDTLSGHPDPTFKDPN 248
+ G +W V +YE+L FC+ CG +GH C V + D + + +
Sbjct: 186 KNKKG---EWCVVNFKYEKLGIFCFVCGIMGHTENKCAVRYAMEQDDGRRYWSADIRAES 245
Query: 249 VNLLVFKTPL-----KGGNME------EVK-SRKATRTWKNP------------------ 308
+T KGG E EV+ S +A+ + P
Sbjct: 246 SRQGGRQTSRWLREEKGGRKEHEGLEREVRSSTQASSSHAGPSADDVAATVQDARPAGIP 305
Query: 309 --------LPKTMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVK 368
LP MKI+ WN RGL P A +L N+ H PDILF +ET + + RV+
Sbjct: 306 QENITDQGLPGPMKILSWNCRGLSTPSAIPNLRNIAHGHQPDILFFSETLSKAQVMERVR 365
Query: 369 LRCKFTGCLPVNSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGY 428
+ F CL V+ GGL + W DT+ + ++S + I+ V + WR T YGY
Sbjct: 366 VNLNFNSCLSVDVEGRSGGLSVMWKDTIKCRVLNYSRNFINLVVEEREEGEWRLTCYYGY 425
BLAST of HG10017614 vs. ExPASy TrEMBL
Match:
A0A2N9GPY1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29425 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 7.1e-59
Identity = 132/389 (33.93%), Postives = 189/389 (48.59%), Query Frame = 0
Query: 41 LIGKLLPPKIIAGNALRNAFFNAWRMDHG-----INISKLF-------DKEWVMSAGPWL 100
L + L +I+ ++ F WR DHG +N ++L D+E VM PW
Sbjct: 34 LAARFLTRRILNVESVARTFKPLWRTDHGFIVRDMNENRLVFVFEDEADRERVMMGEPWA 93
Query: 101 FDKHLLILEELGVDRQLSDLNFNKVAFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECD 160
+DKHL++L+ + D + D+ F K +FW+++ LP N IG +G V+V
Sbjct: 94 YDKHLVVLQRIEEDEAIDDVLFCKTSFWVQMHGLPVRRMNHETAVTIGSSLGSIVQVAEG 153
Query: 161 QEGLCWGDSMRIKVHLDILKPLRRGIKVLSSNGLEEKWVAIRYERLPDFCYSCGRIGHVT 220
+ + G +MR++V+LDI KPL RG KV E W+ RYERLP+FCY CG + H
Sbjct: 154 EANVEGGTAMRLRVNLDITKPLCRGRKVRFEKD-RETWITFRYERLPNFCYWCGHVTHSD 213
Query: 221 KDCVNIPVNPDTLSGHPD---PTFKDPNVNLLVFKTPLKGGNMEEVKSRKATRTWKNPLP 280
KDC + N D+L P + PN E RK + P
Sbjct: 214 KDCPHWLRNKDSLRLEEQQFGPWLRAPN----------------ERPWRKLEIKVEVP-Q 273
Query: 281 KTMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLP 340
+TM + WN RGLGNPR L LV P ++F+ ET R++ + +F
Sbjct: 274 RTMNALAWNCRGLGNPRTVQELARLVRAQDPAVVFLIETWQDDGPLERLRCQLQFKNKFV 333
Query: 341 VNSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWKNSH-WRFTGVYGYPESARKHLTW 400
S GGLC+FW + + SFS HIDA+ WR TG YG PE+ + +W
Sbjct: 334 AKSRNKGGGLCLFWKKEIKLRVHSFSPSHIDAIINENQQDIWRLTGFYGAPETRNREESW 393
Query: 401 ELLNRLNNREDVPWLLGGDFNNILYDNEK 414
LL RL+++ +PW GDFN ++ EK
Sbjct: 394 ALLRRLSSQYSIPWCCLGDFNELVRIEEK 404
BLAST of HG10017614 vs. ExPASy TrEMBL
Match:
A0A2N9GJ35 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 5.1e-57
Identity = 150/480 (31.25%), Postives = 215/480 (44.79%), Query Frame = 0
Query: 1 MTDKITAELELLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAF 60
MT+++ + LS E+E I L + H ++ KLL K A + +
Sbjct: 1 MTEELEELCRRMKLS-EKEMLRISLRKDPILKSKKEAQHSILFKLLTTKPFHSEAFKGSI 60
Query: 61 FNAWRMDHGINI----SKLF--------DKEWVMSAGPWLFDKHLLILEELGVDRQLSDL 120
W G+ I LF D E + PW FDK L+ + D Q +++
Sbjct: 61 RALWSGLGGVTIRSIEGNLFMAVFTRRDDMERIFVRSPWTFDKKLIPIVRFEGDLQPTEV 120
Query: 121 NFNKVAFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILK 180
F+ AFWIR+ NLP R + IG+EIG +EV+ + G WG+ +RI+V +DI +
Sbjct: 121 RFSHTAFWIRVFNLPIKSMIREVGEDIGQEIGRLLEVDVPENGFGWGEYLRIRVEIDIAQ 180
Query: 181 PLRRGIKVLS--SNGLEEKWVAIRYERLPDFCYSCGRIGHVTKDCV-------------- 240
PL RG + S S+G WV +YE LP FCY CGR+GH + +CV
Sbjct: 181 PLLRGCILQSDESDGGGLFWVDFKYEHLPIFCYRCGRLGHGSHECVVGRGGRISEGVSGE 240
Query: 241 ----------NIPVNP---------DTLSGHPDPTFKDPNVNLLVFKTPLKGGN------ 300
P P G + F P+ GG
Sbjct: 241 KWGAWLRALAARPAQPRRSREGVFQPDEEGESNMPFDREAATENDPSPPVSGGGCKLWDG 300
Query: 301 ------MEEVK------SRKATRTWKNPLPKTMKIICWNARGLGNPRAFHSLCNLVHTTS 360
+EE+ R A + K+ P TM+ + N RGLGNP+ + L NLV
Sbjct: 301 HWLHELLEEIMQLEMHVERPACSSGKDAPPVTMRALSLNCRGLGNPQTVNELHNLVKKEG 360
Query: 361 PDILFVAETKGGSDLCNRVKLRCKFTGCLPVNSVRAKGGLCIFWSDTVVSEIKSFSSHHI 415
P+I+F+ ET+ +++R GCL V GGL + W +V+ I+S+S HHI
Sbjct: 361 PNIVFLMETRLNVRNLEWLRVRLGMKGCLGVERHGQGGGLALLWDSSVMINIQSYSEHHI 420
BLAST of HG10017614 vs. ExPASy TrEMBL
Match:
A0A392M6V1 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0003665 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 9.6e-56
Identity = 126/447 (28.19%), Postives = 205/447 (45.86%), Query Frame = 0
Query: 11 LLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWRMDHGI 70
L LS EE D ++ L CL+G+ + + I N++ + W+ G+
Sbjct: 6 LEGLSLHEEEEGFRFDFEADEDEQVDLRWCLVGRFICERSIHFNSMSIRMADLWKPVRGV 65
Query: 71 NISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFWIR 130
I + D E V++ PW+FD ++LILE++ + Q+ + V W++
Sbjct: 66 TIKEASAGKILFHFAHPLDMEAVLNGSPWIFDNNMLILEQVQLGMQIEHIPLFHVNMWVQ 125
Query: 131 LLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKVLS 190
+ +LP G + + IG FVE + W + MRI+V +D+ PL++ KV++
Sbjct: 126 VHDLPMGLMKEKVGIPLANYIGSFVEYDKKNNSTFWREFMRIRVKIDVRLPLKKDTKVMN 185
Query: 191 SNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC----------------VNIPVNPDT 250
G KW V +YE+L FC+ CG +GH C + +P T
Sbjct: 186 KEG---KWCTVKFKYEKLGTFCFVCGIMGHSENKCEVRFSMEQDDGTREWSAELRADPRT 245
Query: 251 LSGHPDPTF--KDPNVNLLVFKTPLKGGNMEEVKSR-----------KATRTWKNPLPKT 310
G P + +D + + G + S A ++W+ LP
Sbjct: 246 RGGRPVSRWLREDRGGPMRHHGGDVAGQSNPPANSNSVDPTVAELALNAQQSWQPGLPGP 305
Query: 311 MKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPVN 370
MKI+ WN RGL A +L N+ PDILF+AET + R+++ KF CL V+
Sbjct: 306 MKILSWNCRGLSTSSAIPNLSNIAQGYQPDILFLAETLSKNHTMERIRVNLKFQSCLSVD 365
Query: 371 SVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLTWEL 414
+ GGL + W D++ + ++S + I+ + K WR T YGYPE R+ W+L
Sbjct: 366 AEGRSGGLSVMWRDSISCRVMNYSRNFINLIVREKEEEEWRLTCYYGYPERGRRRQAWDL 425
BLAST of HG10017614 vs. ExPASy TrEMBL
Match:
A0A2K3PM58 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013091 PE=4 SV=1)
HSP 1 Score: 227.3 bits (578), Expect = 1.3e-55
Identity = 139/463 (30.02%), Postives = 218/463 (47.08%), Query Frame = 0
Query: 6 TAELELLNLSGEEERTSIPLDLGIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWR 65
T L+ L+L EEE + ++ L CLIG+ L K I N+++ + W+
Sbjct: 3 TPNLDGLSLH-EEEEDGFSFEFEEEEDAQVDLRWCLIGRFLCDKAIHVNSMKVRMADLWK 62
Query: 66 MDHGINISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKV 125
G+ I + D E V++ PW+FD ++L+LE + + Q+ + N V
Sbjct: 63 PVMGVTIKETKRGIFLFHFNHQIDMEEVLNGSPWIFDYNMLVLERVQLGMQIEQIPLNHV 122
Query: 126 AFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRG 185
+ W+++ NLP G + + IG F+E + + W + MRI+V +D+ PL++
Sbjct: 123 SLWVQVHNLPTGLMKERVGTTLANYIGEFMEYDKNNNTSFWREFMRIRVKIDVRLPLKKD 182
Query: 186 IKVLSSNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC-VNIPV-NPDTLSG-----H 245
KV + G KW V I+YE+L FC+ CG +GH C V + N D G
Sbjct: 183 AKVKNREG---KWCTVNIKYEKLGVFCFVCGIMGHAENKCQVRFAMENDDGRRGWSADLR 242
Query: 246 PDPTFKDPNVNLLVFKTPLKGGNMEEVKS------------------RKATRTWKNPLPK 305
+P + V K +GG+ E A +W+ LP
Sbjct: 243 AEPRRRGGRVTSRWLKE--EGGSGETAMGGHTAVPPNFQPEQSSGGPAYADVSWQPGLPG 302
Query: 306 TMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCLPV 365
MKI+ WN RGL P A +L N+ PDILF++ET + RV++ +++ CL V
Sbjct: 303 PMKILSWNCRGLSTPSAIPNLRNVAQGHQPDILFLSETLSKAQSMERVRVMLQYSSCLSV 362
Query: 366 NSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLTWE 425
+ GGL + W DT I ++S + I+ + WR T YGYPE +R+ W+
Sbjct: 363 DVEGRSGGLSVMWRDTTNCRIMNYSRNFINLIVDDPVKGEWRLTCYYGYPERSRRRQAWD 422
Query: 426 LLNRLNNREDVPWLLGGDFNNILYDNEKSWDPSTPPPPPCCSG 429
LL L + D+PW + GDFN++L +K + P P C+G
Sbjct: 423 LLRELRDMSDLPWCIVGDFNDLLSQEDKK--GTLPHPNWLCNG 457
BLAST of HG10017614 vs. ExPASy TrEMBL
Match:
A0A2K3PQU3 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g014404 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 1.6e-55
Identity = 135/465 (29.03%), Postives = 219/465 (47.10%), Query Frame = 0
Query: 9 LELLNLSGEEERTSIPLDL---GIAQEINGHLNHCLIGKLLPPKIIAGNALRNAFFNAWR 68
L+ L+L EEE + D G +++ L CL+G+ + + I N++ + W+
Sbjct: 6 LDGLSLHEEEEEEGLCFDFEEEGDDEQV--ELRWCLVGRFICERNIHFNSMSVRMADLWK 65
Query: 69 MDHGINISKL------------FDKEWVMSAGPWLFDKHLLILEELGVDRQLSDLNFNKV 128
G+ I + +D E V++ GPW+FD ++L+LE++ + Q+ +
Sbjct: 66 PVRGVTIKEAKPGLFLFHFAHPYDMEAVLNGGPWIFDYNMLLLEQVQLGMQVDHIPLFHA 125
Query: 129 AFWIRLLNLPFGFQNRLMTRRIGEEIGGFVEVECDQEGLCWGDSMRIKVHLDILKPLRRG 188
W+++ +LP G + + IG FVE + + W MR++V +D+ +PL++
Sbjct: 126 VMWVQIHDLPMGLMKEKVGIGLANYIGSFVEYDKNNNTSFWRQFMRVRVKIDVRQPLKKD 185
Query: 189 IKVLSSNGLEEKW--VAIRYERLPDFCYSCGRIGHVTKDC----------------VNIP 248
KV + G KW V +YE+L FC+ CG +GH C ++
Sbjct: 186 YKVKNKEG---KWCTVNFKYEKLGVFCFVCGIMGHAENKCEVRYSMEQDDGRREWSADLR 245
Query: 249 VNPDTLSGHPDPTF--------KDPNVNLLVFKTPLKGG--NMEEVKSRKATRTWKNP-L 308
P G + +D V + + G N + + + K P L
Sbjct: 246 AEPKRQGGRQSSRWLKEDKGGREDQGRRDTVVQPNNQPGSSNTGPIGAELDPKIPKEPGL 305
Query: 309 PKTMKIICWNARGLGNPRAFHSLCNLVHTTSPDILFVAETKGGSDLCNRVKLRCKFTGCL 368
P MKI+ WN RGL NP A +L N+ H PDILF++ET + RV++ KF CL
Sbjct: 306 PGPMKILSWNCRGLSNPSAIPNLHNIAHGHKPDILFLSETLSKAQSMERVRVNLKFQSCL 365
Query: 369 PVNSVRAKGGLCIFWSDTVVSEIKSFSSHHIDAVFTWK-NSHWRFTGVYGYPESARKHLT 428
V+ GGL + W DT+ + ++S + I+ + K WR T YGYPE R+
Sbjct: 366 SVDVEGRSGGLSVMWRDTIKCRVLNYSRNFINLIVEEKEGEEWRLTCYYGYPERGRRRQA 425
BLAST of HG10017614 vs. TAIR 10
Match:
AT3G42140.1 (zinc ion binding;nucleic acid binding )
HSP 1 Score: 56.2 bits (134), Expect = 7.4e-08
Identity = 31/131 (23.66%), Postives = 54/131 (41.22%), Query Frame = 0
Query: 81 VMSAGPWLFDKHLLILEELGVDRQLSDLNFNKVAFWIRLLNLPFGFQNRLMTRRIGEEIG 140
++ GPW F+ + +++ + SD F ++ FWI++ +P F + IGE +G
Sbjct: 75 ILRRGPWSFNDWMCVIQRW--TKLHSDAEFKRIPFWIQIRGIPLRFLTARIITSIGERMG 134
Query: 141 GFVEVECDQEGLCWGDSMRIKVHLDILKPLRRGIKVLSSNGLEEKWVAIRYERLPDFCYS 200
F+E L R + VL +YE+L +FC +
Sbjct: 135 LFLETN-----------------------LGRDVSVLK----------FQYEKLKNFCTT 170
Query: 201 CGRIGHVTKDC 212
CG + H +C
Sbjct: 195 CGMLSHDASEC 170
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
GAU14523.1 | 1.2e-57 | 30.86 | hypothetical protein TSUD_250650 [Trifolium subterraneum] | [more] |
MCH82853.1 | 2.0e-55 | 28.19 | hypothetical protein [Trifolium medium] | [more] |
PNY16372.1 | 2.6e-55 | 30.02 | ribonuclease H, partial [Trifolium pratense] | [more] |
PNY17656.1 | 3.4e-55 | 29.03 | ribonuclease H, partial [Trifolium pratense] | [more] |
MCH80000.1 | 1.9e-53 | 29.32 | hypothetical protein [Trifolium medium] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9GPY1 | 7.1e-59 | 33.93 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9GJ35 | 5.1e-57 | 31.25 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1 | [more] |
A0A392M6V1 | 9.6e-56 | 28.19 | Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0003665... | [more] |
A0A2K3PM58 | 1.3e-55 | 30.02 | Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g013091 PE=4 SV... | [more] |
A0A2K3PQU3 | 1.6e-55 | 29.03 | Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g014404 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT3G42140.1 | 7.4e-08 | 23.66 | zinc ion binding;nucleic acid binding | [more] |