HG10017370 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017370
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein RETICULATA-RELATED 3, chloroplastic
Location	Chr03: 13779286 .. 13780395 (-)
RNA-Seq Expression	HG10017370
Synteny	HG10017370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTATGGCTCAGCTGCATTGTTCCGTTCGCCCTAGACATTACTATAATGTTCCAAATAATCATGCTTATAACAACACTCCGGCTTTCTCTTTTCCGTCTAATTCATCGGTTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTCTAGCGAAATCTGAGCTTTCACTGGCTGGAGGCGATGGTGGAAATGGTGTTGGCCATGGCGGAAGAGGTGGCGGAGGTGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGGGATGATGATAATTCATCAAGTTTTGGATTGTTGGGATTGTTCCTTAAAGGGTGGAGATCCAGAGTTGCTGCAGATCCACAGTTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCCCGTCCCAACTTTGGTCTCAACGAGCTCGACTTCGTCTTCTCCACCCTCGTCGTTGGATCGATACTGAATTTCACTCTCATGTATCTATTGGCACCCACTGCAGCAGCTGGTGTAGCAGCCAAGCAGCTACCTGCAATCTTTGCAAGTTGCCCAACTAGTCATATGTTCGAACCCGGTGCATTTACGGTCTTAGATCGATTGGGAACCTTTGTTTACAAGGGAACCGTCTTTGCCGCAGTTGGACTAGCAGCTGGGATCGTCGGGACTGCACTCTCGAATGGTTTGATCAAGCTAAGGAAGAAGATGGATCCCGGATTCGAGACACCTAACAAGGCGCCTCCTACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTCAGTAGTAACTTGAGATATCAAACTTTGAATGGGGTTGAATATGTGTTAGCCAAGGGGCTTCCTCCTCTGGCATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAACGTTCTCGGGGGCATGTCGTTTGTCGTCCTCGCACGATTGACAGGTTCTCAAAGCGTCGAGGGGCCGAAGCCAGCAGCAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAGCTGTTGGAGGGAGATAAAGAAGAGGAGTTGAGGAACAACCAAACAGCTTGCAAGTGA

mRNA sequence

ATGGCGGCTATGGCTCAGCTGCATTGTTCCGTTCGCCCTAGACATTACTATAATGTTCCAAATAATCATGCTTATAACAACACTCCGGCTTTCTCTTTTCCGTCTAATTCATCGGTTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTCTAGCGAAATCTGAGCTTTCACTGGCTGGAGGCGATGGTGGAAATGGTGTTGGCCATGGCGGAAGAGGTGGCGGAGGTGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGGGATGATGATAATTCATCAAGTTTTGGATTGTTGGGATTGTTCCTTAAAGGGTGGAGATCCAGAGTTGCTGCAGATCCACAGTTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCCCGTCCCAACTTTGGTCTCAACGAGCTCGACTTCGTCTTCTCCACCCTCGTCGTTGGATCGATACTGAATTTCACTCTCATGTATCTATTGGCACCCACTGCAGCAGCTGGTGTAGCAGCCAAGCAGCTACCTGCAATCTTTGCAAGTTGCCCAACTAGTCATATGTTCGAACCCGGTGCATTTACGGTCTTAGATCGATTGGGAACCTTTGTTTACAAGGGAACCGTCTTTGCCGCAGTTGGACTAGCAGCTGGGATCGTCGGGACTGCACTCTCGAATGGTTTGATCAAGCTAAGGAAGAAGATGGATCCCGGATTCGAGACACCTAACAAGGCGCCTCCTACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTCAGTAGTAACTTGAGATATCAAACTTTGAATGGGGTTGAATATGTGTTAGCCAAGGGGCTTCCTCCTCTGGCATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAACGTTCTCGGGGGCATGTCGTTTGTCGTCCTCGCACGATTGACAGGTTCTCAAAGCGTCGAGGGGCCGAAGCCAGCAGCAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAGCTGTTGGAGGGAGATAAAGAAGAGGAGTTGAGGAACAACCAAACAGCTTGCAAGTGA

Coding sequence (CDS)

ATGGCGGCTATGGCTCAGCTGCATTGTTCCGTTCGCCCTAGACATTACTATAATGTTCCAAATAATCATGCTTATAACAACACTCCGGCTTTCTCTTTTCCGTCTAATTCATCGGTTGTTGAATCGAGGAGTCGATCTCTTTCTCTTTTTAATGCGGATTTAACTAGGCCTAGTTTTCTAGCGAAATCTGAGCTTTCACTGGCTGGAGGCGATGGTGGAAATGGTGTTGGCCATGGCGGAAGAGGTGGCGGAGGTGGTGGTGGTGATGGTGGTTGGAGTGATGATCGAACTCATGGGGATGATGATAATTCATCAAGTTTTGGATTGTTGGGATTGTTCCTTAAAGGGTGGAGATCCAGAGTTGCTGCAGATCCACAGTTTCCTTTCAAGGTACTGATGGAAGAATTGGTTGGTGTGAGTTCTTGTGTTCTTGGAGACATGGCGTCCCGTCCCAACTTTGGTCTCAACGAGCTCGACTTCGTCTTCTCCACCCTCGTCGTTGGATCGATACTGAATTTCACTCTCATGTATCTATTGGCACCCACTGCAGCAGCTGGTGTAGCAGCCAAGCAGCTACCTGCAATCTTTGCAAGTTGCCCAACTAGTCATATGTTCGAACCCGGTGCATTTACGGTCTTAGATCGATTGGGAACCTTTGTTTACAAGGGAACCGTCTTTGCCGCAGTTGGACTAGCAGCTGGGATCGTCGGGACTGCACTCTCGAATGGTTTGATCAAGCTAAGGAAGAAGATGGATCCCGGATTCGAGACACCTAACAAGGCGCCTCCTACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTCAGTAGTAACTTGAGATATCAAACTTTGAATGGGGTTGAATATGTGTTAGCCAAGGGGCTTCCTCCTCTGGCATTCAAGAGCTCTGTGGTGGTGTTGAGATGTTTGAACAACGTTCTCGGGGGCATGTCGTTTGTCGTCCTCGCACGATTGACAGGTTCTCAAAGCGTCGAGGGGCCGAAGCCAGCAGCAGTGGAGTTGGATTCTGGTGATGAGAAAGAGAAGCTGTTGGAGGGAGATAAAGAAGAGGAGTTGAGGAACAACCAAACAGCTTGCAAGTGA

Protein sequence

MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEEELRNNQTACK

Homology

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BLAST of HG10017370 vs. NCBI nr
Match: XP_038883563.1 (protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 675.6 bits (1742), Expect = 2.4e-190
Identity = 352/369 (95.39%), Postives = 362/369 (98.10%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFL 60
           MAAMAQLHCSVRPRH+YNVPNN AYN+TPAFSF SNSSVVESRSRSLS FNADLTRPSFL
Sbjct: 1   MAAMAQLHCSVRPRHHYNVPNNPAYNSTPAFSFLSNSSVVESRSRSLSFFNADLTRPSFL 60

Query: 61  AKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSR 120
           AKSELSLAGGDGGNGVGHGGR GGGGGGDGGWSDDRTHGDD++SSSFG+LGLFLKGWRSR
Sbjct: 61  AKSELSLAGGDGGNGVGHGGR-GGGGGGDGGWSDDRTHGDDNDSSSFGVLGLFLKGWRSR 120

Query: 121 VAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180
           VAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA
Sbjct: 121 VAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180

Query: 181 PTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTAL 240
           PTAAAG AAKQLPAIFASCPTSHMFEPGAFT+LDRLGTFVYKGTVFAAVGLAAG+VGTAL
Sbjct: 181 PTAAAGAAAKQLPAIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGTAL 240

Query: 241 SNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPL 300
           SNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVE++LAKGLPPL
Sbjct: 241 SNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEFLLAKGLPPL 300

Query: 301 AFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEEE 360
           AFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPA +ELDSGDEKEKLLEGDKEEE
Sbjct: 301 AFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAVMELDSGDEKEKLLEGDKEEE 360

Query: 361 LRNNQTACK 370
           LR NQTACK
Sbjct: 361 LRGNQTACK 368

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BLAST of HG10017370 vs. NCBI nr
Match: XP_004142670.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucumis sativus] >KGN54469.1 hypothetical protein Csa_012048 [Cucumis sativus])

HSP 1 Score: 666.4 bits (1718), Expect = 1.4e-187
Identity = 349/371 (94.07%), Postives = 361/371 (97.30%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSR--SLSLFNADLTRPS 60
           MAAMAQLHCSVRPR YY+VPNNH +NNTPAFSF SNSS VESRSR  SLSLFNADLTRPS
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60

Query: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWR 120
           FLAKSELSLAGGDGGNGVGHGGR GGGGGGDGGWSDDRTHGDDD+SSSFG+LGLFLKGWR
Sbjct: 61  FLAKSELSLAGGDGGNGVGHGGR-GGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWR 120

Query: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180
           SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL
Sbjct: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180

Query: 181 LAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGT 240
           LAPTAAAGVAA++LP+IFASCPTSHMFEPGAFT+LDR+GTFVYKGTVFAAVGLAAG+VGT
Sbjct: 181 LAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGT 240

Query: 241 ALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300
           ALSNGLI LRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP
Sbjct: 241 ALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300

Query: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKE 360
           PLAFKSSVVVLRCLNNVLGGMSFVVLAR+TGSQSVEGPK A VELDSGDEKEKLLEGDKE
Sbjct: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKE 360

Query: 361 EELRNNQTACK 370
           EELR+NQTACK
Sbjct: 361 EELRSNQTACK 370

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BLAST of HG10017370 vs. NCBI nr
Match: XP_008463291.1 (PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903009.1 PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >TYK06219.1 protein RETICULATA-RELATED 3 [Cucumis melo var. makuwa])

HSP 1 Score: 666.0 bits (1717), Expect = 1.9e-187
Identity = 350/371 (94.34%), Postives = 359/371 (96.77%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSR--SLSLFNADLTRPS 60
           MAAMAQLHCSVRPR YYNVPNNH +NNTPAFSF SNSSVVESRSR  SLSLFNADLTR S
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTRRS 60

Query: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWR 120
           +LAKSELSLAGGDGGNGVGHGG+ GGGGGGDGGWSDDRTHGDDD+SSSFG+LGLFLKGWR
Sbjct: 61  YLAKSELSLAGGDGGNGVGHGGK-GGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWR 120

Query: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180
           SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL
Sbjct: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180

Query: 181 LAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGT 240
           LAPTAAAG  AKQLP+IFASCPTSHMFEPGAFT+LDRLGTFVYKGTVFAAVGLAAG+VGT
Sbjct: 181 LAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGT 240

Query: 241 ALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300
           ALSNGLI LRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP
Sbjct: 241 ALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300

Query: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKE 360
           PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPK A VELDSGDEKEKLLEGDKE
Sbjct: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDKE 360

Query: 361 EELRNNQTACK 370
           EELR+NQTACK
Sbjct: 361 EELRSNQTACK 370

[Close]

BLAST of HG10017370 vs. NCBI nr
Match: XP_022156248.1 (protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia])

HSP 1 Score: 621.3 bits (1601), Expect = 5.3e-174
Identity = 329/363 (90.63%), Postives = 348/363 (95.87%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFL 60
           MAAMAQLHCS+RPR+YYNVP NHAYNNTPAFSF S+SSV++SR+RSLSLF+ DLTRPSFL
Sbjct: 1   MAAMAQLHCSLRPRNYYNVPCNHAYNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPSFL 60

Query: 61  AKSELSLA-GGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRS 120
           AKSELSLA GGDGG+GVG GG GGGGGG  GGWSDDR HGDDD SSSFG+LGLFLKGWRS
Sbjct: 61  AKSELSLAGGGDGGDGVGRGG-GGGGGGDSGGWSDDRAHGDDD-SSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTA 240
           APTAAAGVAAKQLPAIF+SCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAG+VGTA
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIKLRKKMDP FETPNKAPPTLLNA+TWAIHMGVSSNLRYQTLNGVE+VLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGG+SFV+LAR TGSQS+E PK AAVELDS DEKEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGDKDE 360

Query: 361 ELR 363
           EL+
Sbjct: 361 ELK 361

[Close]

BLAST of HG10017370 vs. NCBI nr
Match: XP_022966374.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 607.4 bits (1565), Expect = 7.9e-170
Identity = 317/362 (87.57%), Postives = 340/362 (93.92%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFL 60
           MA+MAQLHCSVRPR+YYNVP++HAYNN PAFSF SNSS VESRSRSLSLFNADLTR  FL
Sbjct: 1   MASMAQLHCSVRPRNYYNVPSSHAYNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSRFL 60

Query: 61  AKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSR 120
            KSELSLAGGDGGNGVG GG GGGGGG +GGWSDDR  GDD  SSSFG+ GLFL+GWR+R
Sbjct: 61  VKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADGDD--SSSFGVFGLFLQGWRTR 120

Query: 121 VAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180
           VAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA
Sbjct: 121 VAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180

Query: 181 PTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTAL 240
           PTA+AGVAAKQLPAIF SCPTSHMFEPGAFTVL+RLGT VYKGTVFA VGLAAG+VGTAL
Sbjct: 181 PTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTAL 240

Query: 241 SNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPL 300
           SNGLIKLRKKMDP FETPNKAPPTLLNAMTWAIHMGVSSNLRYQ+LNG+E+VLAKGLPPL
Sbjct: 241 SNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPPL 300

Query: 301 AFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEEE 360
           AFKSSVVVLRCLNN+LGGMSFV+LAR+TGSQSVE  KPAA++LD+ D KEKLLEGDK+EE
Sbjct: 301 AFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGDKDEE 360

Query: 361 LR 363
           L+
Sbjct: 361 LK 360

[Close]

BLAST of HG10017370 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 5.1e-103
Identity = 204/313 (65.18%), Postives = 243/313 (77.64%), Query Frame = 0


Query: 22  NHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFLAKSELSLAGGDGGNGVGHGGR 81
           N + + T   SFP N SV    S   +  +  L +P          AGG GG   G+ G 
Sbjct: 26  NLSRDPTTRVSFPRNGSVC---SLHTNFSSPHLAKP---------CAGGGGGGSTGNNGG 85

Query: 82  GGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSRVAADPQFPFKVLMEELVGVSS 141
           G G GGG GG+        ++ SS +G +GLF++GWRSRVAADPQFPFKVLMEE+VG+S+
Sbjct: 86  GSGSGGGGGGFGGSGGEASEE-SSPWGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSA 145

Query: 142 CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAAAGVAAKQLPAIFASCPT 201
           CVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY+LAPTAA   +++ LP IF +CP+
Sbjct: 146 CVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIFRNCPS 205

Query: 202 SHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKLRKKMDPGFETPNKA 261
           SHMFE G+FTV++R GT VYKG VFA+VGLAAG+VGTA+SNGLI LRKKMDP FETPNK 
Sbjct: 206 SHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKP 265

Query: 262 PPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSF 321
           PPT+LN++TWA HMGVS+N RYQTLNG+E++LAK LPPL FK+SV+VLRC NNV GGMSF
Sbjct: 266 PPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIVLRCANNVAGGMSF 325

Query: 322 VVLARLTGSQSVE 335
           V+LAR+TGSQSVE
Sbjct: 326 VLLARMTGSQSVE 325

[Close]

BLAST of HG10017370 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.1e-100
Identity = 215/355 (60.56%), Postives = 260/355 (73.24%), Query Frame = 0


Query: 1   MAAM-AQLHCSVR-PRHYYNVPN--NHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTR 60
           MAAM A+LH S +  +    +P   N + + T    FP N SV        S  + + + 
Sbjct: 1   MAAMAAKLHISTKSDQSNVRLPRLINLSRDPTARVLFPRNGSV--------SSLHTNFSS 60

Query: 61  PSFLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKG 120
           P+ +    +  AGG GG  +G+ G G G GGG GG+       +++ SS +G LGLF++G
Sbjct: 61  PNIM----VPCAGGGGGGSIGNHGGGSGSGGGGGGYGG----SEEEESSPWGPLGLFIQG 120

Query: 121 WRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM 180
           WRSRVAAD QFPFKVLME LVGVS+ VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM
Sbjct: 121 WRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM 180

Query: 181 YLLAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIV 240
           YLLAP+A +  ++  LP IF SCP+SHMFE G FT+++R GT VYKG VFA VGLAAG+V
Sbjct: 181 YLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLV 240

Query: 241 GTALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKG 300
           GTA+SNGLI LRKK+DP FETPNK PPTLLN++TWA HMGVS+N+RYQTLNG E++L K 
Sbjct: 241 GTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKS 300

Query: 301 LPPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEK 352
           LPPL FK+SV+ LR +NNVLGGMSFV LAR+TGSQSVE  K   +E+    EKEK
Sbjct: 301 LPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEK--KIEMSEISEKEK 337

[Close]

BLAST of HG10017370 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-23
Identity = 105/329 (31.91%), Postives = 155/329 (47.11%), Query Frame = 0


Query: 70  GDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDD---------------------------- 129
           GDG N  G  G GGGGGGG+GG  D    G+D                            
Sbjct: 112 GDGFN--GSDGNGGGGGGGNGGEGDG--EGEDYEEKEFGPILKFEEVMKETEARGATLPS 171

Query: 130 --------------------DNSSSFGLLGLFLKGW---RSRVAADPQFPFKVLMEELVG 189
                               D  SS GLLG  ++ W   R+R+ ADP F FK+  E ++ 
Sbjct: 172 DMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVID 231

Query: 190 VSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTAAAGVAAKQ 249
                + ++  R      E +   + L+VG+++N  L+ +LA       P+A+ G   + 
Sbjct: 232 SCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRM 291

Query: 250 LPAIFASCPTSHMFE---PGA-FTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKL 309
           + A + + P+S +FE   PG  F+   RL T+ YKG ++ AVG   GIVG  ++N ++  
Sbjct: 292 VFA-YNALPSS-VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTA 351

Query: 310 RKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVL-----AKGLPPLAF 332
           ++ ++   E     PP + +A  W + + VSSN RYQ +NG+E V+     AK  PP A 
Sbjct: 352 KRNINKS-EENIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAM 411

[Close]

BLAST of HG10017370 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.4e-22
Identity = 99/326 (30.37%), Postives = 144/326 (44.17%), Query Frame = 0


Query: 65  LSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLK--------- 124
           LS + G+GG+    GG  GGGGGGDGG +D   HGD+D   +     L LK         
Sbjct: 60  LSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESL 119

Query: 125 -------------------------------------GWRSRVAADPQFPFKVLMEELVG 184
                                                G+R R+ AD  F  K+ ME  VG
Sbjct: 120 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVG 179

Query: 185 VSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAA----AGVAAKQLPA 244
           + +    +   R     NEL+ VF+ + +  I +F L+YL APT +      + A  +  
Sbjct: 180 IFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISK 239

Query: 245 IFASCPTSHM---FEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKLRKKM 304
            F +CP +         ++T+L RLG     G    AVG  + +VGTA++N  IK RK +
Sbjct: 240 FFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAV 299

Query: 305 DPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP------LAFKSS 332
           D   E   +  P +  ++ + ++M VSSNLRYQ + GV  +  + L P      LA  + 
Sbjct: 300 DQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLALSAL 359

[Close]

BLAST of HG10017370 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-21
Identity = 114/346 (32.95%), Postives = 156/346 (45.09%), Query Frame = 0


Query: 60  LAKSELSLAGGDGG------NGVGHGGRG-GGGGGGDGGWSDDRTHGDDDNSSSFG---- 119
           L+  E  L  GDGG      +G G+GG G GGGGGGDG   D     D      FG    
Sbjct: 91  LSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILK 150

Query: 120 ---------------------------------LLGLFLKG--W------------RSRV 179
                                            L  L L+G  W            R+R+
Sbjct: 151 FEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRM 210

Query: 180 AADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAP 239
            ADP F FKV  E  +        ++  R     +E +   + L+VG +++  L+ LLAP
Sbjct: 211 LADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAP 270

Query: 240 TAAAG---VAA----KQLPAIFASCPTSHMFE---PGA-FTVLDRLGTFVYKGTVFAAVG 299
            A  G   VA+    K L    AS P+S +FE   PG  F+V  R+ TF YKG ++ +VG
Sbjct: 271 YARIGKPSVASTGLFKDLKRACASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVG 330

Query: 300 LAAGIVGTALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVE 332
              G++G  ++N LI   K+     E     PP   +A  W + +G+SSN RYQ +NG+E
Sbjct: 331 FGCGLIGQGIAN-LIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLE 390

[Close]

BLAST of HG10017370 vs. ExPASy TrEMBL
Match: A0A0A0L080 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 7.0e-188
Identity = 349/371 (94.07%), Postives = 361/371 (97.30%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSR--SLSLFNADLTRPS 60
           MAAMAQLHCSVRPR YY+VPNNH +NNTPAFSF SNSS VESRSR  SLSLFNADLTRPS
Sbjct: 1   MAAMAQLHCSVRPRQYYSVPNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTRPS 60

Query: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWR 120
           FLAKSELSLAGGDGGNGVGHGGR GGGGGGDGGWSDDRTHGDDD+SSSFG+LGLFLKGWR
Sbjct: 61  FLAKSELSLAGGDGGNGVGHGGR-GGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWR 120

Query: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180
           SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL
Sbjct: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180

Query: 181 LAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGT 240
           LAPTAAAGVAA++LP+IFASCPTSHMFEPGAFT+LDR+GTFVYKGTVFAAVGLAAG+VGT
Sbjct: 181 LAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVGT 240

Query: 241 ALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300
           ALSNGLI LRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP
Sbjct: 241 ALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300

Query: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKE 360
           PLAFKSSVVVLRCLNNVLGGMSFVVLAR+TGSQSVEGPK A VELDSGDEKEKLLEGDKE
Sbjct: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGDKE 360

Query: 361 EELRNNQTACK 370
           EELR+NQTACK
Sbjct: 361 EELRSNQTACK 370

[Close]

BLAST of HG10017370 vs. ExPASy TrEMBL
Match: A0A1S3CIX7 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501484 PE=3 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 9.1e-188
Identity = 350/371 (94.34%), Postives = 359/371 (96.77%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSR--SLSLFNADLTRPS 60
           MAAMAQLHCSVRPR YYNVPNNH +NNTPAFSF SNSSVVESRSR  SLSLFNADLTR S
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTRRS 60

Query: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWR 120
           +LAKSELSLAGGDGGNGVGHGG+ GGGGGGDGGWSDDRTHGDDD+SSSFG+LGLFLKGWR
Sbjct: 61  YLAKSELSLAGGDGGNGVGHGGK-GGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWR 120

Query: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180
           SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL
Sbjct: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180

Query: 181 LAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGT 240
           LAPTAAAG  AKQLP+IFASCPTSHMFEPGAFT+LDRLGTFVYKGTVFAAVGLAAG+VGT
Sbjct: 181 LAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGT 240

Query: 241 ALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300
           ALSNGLI LRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP
Sbjct: 241 ALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300

Query: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKE 360
           PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPK A VELDSGDEKEKLLEGDKE
Sbjct: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDKE 360

Query: 361 EELRNNQTACK 370
           EELR+NQTACK
Sbjct: 361 EELRSNQTACK 370

[Close]

BLAST of HG10017370 vs. ExPASy TrEMBL
Match: A0A5D3C7A3 (Protein RETICULATA-RELATED 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00830 PE=3 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 9.1e-188
Identity = 350/371 (94.34%), Postives = 359/371 (96.77%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSR--SLSLFNADLTRPS 60
           MAAMAQLHCSVRPR YYNVPNNH +NNTPAFSF SNSSVVESRSR  SLSLFNADLTR S
Sbjct: 1   MAAMAQLHCSVRPRQYYNVPNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTRRS 60

Query: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWR 120
           +LAKSELSLAGGDGGNGVGHGG+ GGGGGGDGGWSDDRTHGDDD+SSSFG+LGLFLKGWR
Sbjct: 61  YLAKSELSLAGGDGGNGVGHGGK-GGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGWR 120

Query: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180
           SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL
Sbjct: 121 SRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYL 180

Query: 181 LAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGT 240
           LAPTAAAG  AKQLP+IFASCPTSHMFEPGAFT+LDRLGTFVYKGTVFAAVGLAAG+VGT
Sbjct: 181 LAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGT 240

Query: 241 ALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300
           ALSNGLI LRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP
Sbjct: 241 ALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLP 300

Query: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKE 360
           PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPK A VELDSGDEKEKLLEGDKE
Sbjct: 301 PLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGDKE 360

Query: 361 EELRNNQTACK 370
           EELR+NQTACK
Sbjct: 361 EELRSNQTACK 370

[Close]

BLAST of HG10017370 vs. ExPASy TrEMBL
Match: A0A6J1DQ40 (protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023180 PE=3 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 2.6e-174
Identity = 329/363 (90.63%), Postives = 348/363 (95.87%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFL 60
           MAAMAQLHCS+RPR+YYNVP NHAYNNTPAFSF S+SSV++SR+RSLSLF+ DLTRPSFL
Sbjct: 1   MAAMAQLHCSLRPRNYYNVPCNHAYNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPSFL 60

Query: 61  AKSELSLA-GGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRS 120
           AKSELSLA GGDGG+GVG GG GGGGGG  GGWSDDR HGDDD SSSFG+LGLFLKGWRS
Sbjct: 61  AKSELSLAGGGDGGDGVGRGG-GGGGGGDSGGWSDDRAHGDDD-SSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTA 240
           APTAAAGVAAKQLPAIF+SCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAG+VGTA
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP 300
           LSNGLIKLRKKMDP FETPNKAPPTLLNA+TWAIHMGVSSNLRYQTLNGVE+VLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEE 360
           LAFKSSVVVLRCLNNVLGG+SFV+LAR TGSQS+E PK AAVELDS DEKEKLLEGDK+E
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGDKDE 360

Query: 361 ELR 363
           EL+
Sbjct: 361 ELK 361

[Close]

BLAST of HG10017370 vs. ExPASy TrEMBL
Match: A0A6J1HTL4 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466041 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.8e-170
Identity = 317/362 (87.57%), Postives = 340/362 (93.92%), Query Frame = 0


Query: 1   MAAMAQLHCSVRPRHYYNVPNNHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFL 60
           MA+MAQLHCSVRPR+YYNVP++HAYNN PAFSF SNSS VESRSRSLSLFNADLTR  FL
Sbjct: 1   MASMAQLHCSVRPRNYYNVPSSHAYNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSRFL 60

Query: 61  AKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSR 120
            KSELSLAGGDGGNGVG GG GGGGGG +GGWSDDR  GDD  SSSFG+ GLFL+GWR+R
Sbjct: 61  VKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADGDD--SSSFGVFGLFLQGWRTR 120

Query: 121 VAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180
           VAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA
Sbjct: 121 VAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA 180

Query: 181 PTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTAL 240
           PTA+AGVAAKQLPAIF SCPTSHMFEPGAFTVL+RLGT VYKGTVFA VGLAAG+VGTAL
Sbjct: 181 PTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTAL 240

Query: 241 SNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPL 300
           SNGLIKLRKKMDP FETPNKAPPTLLNAMTWAIHMGVSSNLRYQ+LNG+E+VLAKGLPPL
Sbjct: 241 SNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPPL 300

Query: 301 AFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEKLLEGDKEEE 360
           AFKSSVVVLRCLNN+LGGMSFV+LAR+TGSQSVE  KPAA++LD+ D KEKLLEGDK+EE
Sbjct: 301 AFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGDKDEE 360

Query: 361 LR 363
           L+
Sbjct: 361 LK 360

[Close]

BLAST of HG10017370 vs. TAIR 10
Match: AT3G08640.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 375.9 bits (964), Expect = 3.6e-104
Identity = 204/313 (65.18%), Postives = 243/313 (77.64%), Query Frame = 0


Query: 22  NHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTRPSFLAKSELSLAGGDGGNGVGHGGR 81
           N + + T   SFP N SV    S   +  +  L +P          AGG GG   G+ G 
Sbjct: 26  NLSRDPTTRVSFPRNGSVC---SLHTNFSSPHLAKP---------CAGGGGGGSTGNNGG 85

Query: 82  GGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKGWRSRVAADPQFPFKVLMEELVGVSS 141
           G G GGG GG+        ++ SS +G +GLF++GWRSRVAADPQFPFKVLMEE+VG+S+
Sbjct: 86  GSGSGGGGGGFGGSGGEASEE-SSPWGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSA 145

Query: 142 CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAAAGVAAKQLPAIFASCPT 201
           CVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY+LAPTAA   +++ LP IF +CP+
Sbjct: 146 CVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIFRNCPS 205

Query: 202 SHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKLRKKMDPGFETPNKA 261
           SHMFE G+FTV++R GT VYKG VFA+VGLAAG+VGTA+SNGLI LRKKMDP FETPNK 
Sbjct: 206 SHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKP 265

Query: 262 PPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPPLAFKSSVVVLRCLNNVLGGMSF 321
           PPT+LN++TWA HMGVS+N RYQTLNG+E++LAK LPPL FK+SV+VLRC NNV GGMSF
Sbjct: 266 PPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIVLRCANNVAGGMSF 325

Query: 322 VVLARLTGSQSVE 335
           V+LAR+TGSQSVE
Sbjct: 326 VLLARMTGSQSVE 325

[Close]

BLAST of HG10017370 vs. TAIR 10
Match: AT3G08630.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 368.2 bits (944), Expect = 7.5e-102
Identity = 215/355 (60.56%), Postives = 260/355 (73.24%), Query Frame = 0


Query: 1   MAAM-AQLHCSVR-PRHYYNVPN--NHAYNNTPAFSFPSNSSVVESRSRSLSLFNADLTR 60
           MAAM A+LH S +  +    +P   N + + T    FP N SV        S  + + + 
Sbjct: 1   MAAMAAKLHISTKSDQSNVRLPRLINLSRDPTARVLFPRNGSV--------SSLHTNFSS 60

Query: 61  PSFLAKSELSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLKG 120
           P+ +    +  AGG GG  +G+ G G G GGG GG+       +++ SS +G LGLF++G
Sbjct: 61  PNIM----VPCAGGGGGGSIGNHGGGSGSGGGGGGYGG----SEEEESSPWGPLGLFIQG 120

Query: 121 WRSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM 180
           WRSRVAAD QFPFKVLME LVGVS+ VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM
Sbjct: 121 WRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM 180

Query: 181 YLLAPTAAAGVAAKQLPAIFASCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIV 240
           YLLAP+A +  ++  LP IF SCP+SHMFE G FT+++R GT VYKG VFA VGLAAG+V
Sbjct: 181 YLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLV 240

Query: 241 GTALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKG 300
           GTA+SNGLI LRKK+DP FETPNK PPTLLN++TWA HMGVS+N+RYQTLNG E++L K 
Sbjct: 241 GTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKS 300

Query: 301 LPPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAAVELDSGDEKEK 352
           LPPL FK+SV+ LR +NNVLGGMSFV LAR+TGSQSVE  K   +E+    EKEK
Sbjct: 301 LPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEK--KIEMSEISEKEK 337

[Close]

BLAST of HG10017370 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-24
Identity = 105/329 (31.91%), Postives = 155/329 (47.11%), Query Frame = 0


Query: 70  GDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDD---------------------------- 129
           GDG N  G  G GGGGGGG+GG  D    G+D                            
Sbjct: 112 GDGFN--GSDGNGGGGGGGNGGEGDG--EGEDYEEKEFGPILKFEEVMKETEARGATLPS 171

Query: 130 --------------------DNSSSFGLLGLFLKGW---RSRVAADPQFPFKVLMEELVG 189
                               D  SS GLLG  ++ W   R+R+ ADP F FK+  E ++ 
Sbjct: 172 DMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVID 231

Query: 190 VSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTAAAGVAAKQ 249
                + ++  R      E +   + L+VG+++N  L+ +LA       P+A+ G   + 
Sbjct: 232 SCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRM 291

Query: 250 LPAIFASCPTSHMFE---PGA-FTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKL 309
           + A + + P+S +FE   PG  F+   RL T+ YKG ++ AVG   GIVG  ++N ++  
Sbjct: 292 VFA-YNALPSS-VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTA 351

Query: 310 RKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVL-----AKGLPPLAF 332
           ++ ++   E     PP + +A  W + + VSSN RYQ +NG+E V+     AK  PP A 
Sbjct: 352 KRNINKS-EENIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAM 411

[Close]

BLAST of HG10017370 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-23
Identity = 99/326 (30.37%), Postives = 144/326 (44.17%), Query Frame = 0


Query: 65  LSLAGGDGGNGVGHGGRGGGGGGGDGGWSDDRTHGDDDNSSSFGLLGLFLK--------- 124
           LS + G+GG+    GG  GGGGGGDGG +D   HGD+D   +     L LK         
Sbjct: 60  LSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESL 119

Query: 125 -------------------------------------GWRSRVAADPQFPFKVLMEELVG 184
                                                G+R R+ AD  F  K+ ME  VG
Sbjct: 120 PKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVG 179

Query: 185 VSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAA----AGVAAKQLPA 244
           + +    +   R     NEL+ VF+ + +  I +F L+YL APT +      + A  +  
Sbjct: 180 IFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISK 239

Query: 245 IFASCPTSHM---FEPGAFTVLDRLGTFVYKGTVFAAVGLAAGIVGTALSNGLIKLRKKM 304
            F +CP +         ++T+L RLG     G    AVG  + +VGTA++N  IK RK +
Sbjct: 240 FFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAV 299

Query: 305 DPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGLPP------LAFKSS 332
           D   E   +  P +  ++ + ++M VSSNLRYQ + GV  +  + L P      LA  + 
Sbjct: 300 DQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLALSAL 359

[Close]

BLAST of HG10017370 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-22
Identity = 114/346 (32.95%), Postives = 156/346 (45.09%), Query Frame = 0


Query: 60  LAKSELSLAGGDGG------NGVGHGGRG-GGGGGGDGGWSDDRTHGDDDNSSSFG---- 119
           L+  E  L  GDGG      +G G+GG G GGGGGGDG   D     D      FG    
Sbjct: 91  LSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILK 150

Query: 120 ---------------------------------LLGLFLKG--W------------RSRV 179
                                            L  L L+G  W            R+R+
Sbjct: 151 FEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRM 210

Query: 180 AADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAP 239
            ADP F FKV  E  +        ++  R     +E +   + L+VG +++  L+ LLAP
Sbjct: 211 LADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAP 270

Query: 240 TAAAG---VAA----KQLPAIFASCPTSHMFE---PGA-FTVLDRLGTFVYKGTVFAAVG 299
            A  G   VA+    K L    AS P+S +FE   PG  F+V  R+ TF YKG ++ +VG
Sbjct: 271 YARIGKPSVASTGLFKDLKRACASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVG 330

Query: 300 LAAGIVGTALSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVE 332
              G++G  ++N LI   K+     E     PP   +A  W + +G+SSN RYQ +NG+E
Sbjct: 331 FGCGLIGQGIAN-LIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLE 390

The following BLAST results are available for this feature:

BLAST of HG10017370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883563.1	2.4e-190	95.39	protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida]	[more]
XP_004142670.1	1.4e-187	94.07	protein RETICULATA-RELATED 3, chloroplastic [Cucumis sativus] >KGN54469.1 hypoth...	[more]
XP_008463291.1	1.9e-187	94.34	PREDICTED: protein RETICULATA-RELATED 3, chloroplastic [Cucumis melo] >XP_016903...	[more]
XP_022156248.1	5.3e-174	90.63	protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia]	[more]
XP_022966374.1	7.9e-170	87.57	protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima]	[more]

BLAST of HG10017370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9Z2	5.1e-103	65.18	Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z3	1.1e-100	60.56	Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
B9DFK5	1.8e-23	31.91	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]
Q94CJ5	4.4e-22	30.37	Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9FGP9	1.7e-21	32.95	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]

BLAST of HG10017370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L080	7.0e-188	94.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1	[more]
A0A1S3CIX7	9.1e-188	94.34	protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501...	[more]
A0A5D3C7A3	9.1e-188	94.34	Protein RETICULATA-RELATED 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1DQ40	2.6e-174	90.63	protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1HTL4	3.8e-170	87.57	protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of HG10017370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08640.1	3.6e-104	65.18	Protein of unknown function (DUF3411)	[more]
AT3G08630.1	7.5e-102	60.56	Protein of unknown function (DUF3411)	[more]
AT2G37860.3	1.3e-24	31.91	Protein of unknown function (DUF3411)	[more]
AT5G12470.1	3.1e-23	30.37	Protein of unknown function (DUF3411)	[more]
AT5G22790.1	1.2e-22	32.95	reticulata-related 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 120..289 e-value: 1.8E-65 score: 220.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..98
None	No IPR available	PANTHER	PTHR31620:SF17	PROTEIN RETICULATA-RELATED 3, CHLOROPLASTIC-LIKE	coord: 1..346
None	No IPR available	PANTHER	PTHR31620	PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED	coord: 1..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017370.1	HG10017370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane