HG10017285 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017285
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S31, chloroplastic
Location	Chr03: 12617175 .. 12617752 (-)
RNA-Seq Expression	HG10017285
Synteny	HG10017285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAATCTCCAACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGCTTCTCTTGCAATCTCTACTTCATCTCCTTTTTCAATTCCTGCTGGTATGCGTTTGTTAGCTTGAATTTGAGTGTTTACGTCTCTTATTTTCACTTTTTATCGCTTAATTTCTGTTCCGTGTTTGCCTTCTCAGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGTATGTGTCTTTATGTTCTCTGTTCGTTTTCTTTTCTTATTGTTAGTTTCTTGTTTGTTTTCGATGAGTTTCTCTTTCGTTTTTTTATTTTGAATTTATTTTTCGGGGGGAAAAAATGTTCAGGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCGCTAACTAG

mRNA sequence

ATGGCGTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAATCTCCAACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGCTTCTCTTGCAATCTCTACTTCATCTCCTTTTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCGCTAACTAG

Coding sequence (CDS)

ATGGCGTCTCTTCCTTTCGGTCTTCTTCAGGCTGTATCTCAATCTCCAACTCTTTCTCCTCGTTTTTTCTCTTTCTCCAAATCTGAAACCCTAGGAACATCTCTGCGTGCTTCTTCTACTGCTTCTCTTGCAATCTCTACTTCATCTCCTTTTTCAATTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCATTCGTACGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAGCTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACGATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTCGCTAACTAG

Protein sequence

MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAISTSSPFSIPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFAN

Homology

[Close]

BLAST of HG10017285 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIS-TSSPFSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSKSETLGTSLRASSTASLA S TSSP SIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVP PPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

Query: 121 AN 122
           AN
Sbjct: 121 AN 122

[Close]

BLAST of HG10017285 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 9.3e-51
Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIST-SSPFSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRASSTASLAIST SSP SIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 AN 122
           A+
Sbjct: 121 AS 122

[Close]

BLAST of HG10017285 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 7.8e-50
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIS-TSSPFSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSKSETLGTSLRA STASLA S TSSP S+PAVYCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP PP+PPRKDKF+DDEKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 171

[Close]

BLAST of HG10017285 vs. NCBI nr
Match: XP_004147884.1 (30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypothetical protein Csa_018058 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.8e-47
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIST-SSPFSIPAVYCG 60
           MASLPFGLLQA SQ    SPRFFSFSKSE LGTSLRASSTASLAIST SSP SIPA+YCG
Sbjct: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 118

Query: 121 AN 122
            +
Sbjct: 121 GS 118

[Close]

BLAST of HG10017285 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAISTSSPFSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR S+  S   +TSSP SIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTS---ATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of HG10017285 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAISTSSPFSIPAVYCGR 60
           MASL  G    V+ +  L     S S SET G SL +  T   ++STSS  SIP VYCGR
Sbjct: 1   MASLILGAPPRVTVA--LPSSRLSSSHSETAGVSL-SCFTHQFSLSTSSSSSIPLVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFA 120
           GD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLF+
Sbjct: 61  GDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 118

Query: 121 N 122
           N
Sbjct: 121 N 118

[Close]

BLAST of HG10017285 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-15
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETL-GTSLRASSTASLAISTSSPFSIPAVYCG 60
           MASL  G       S +     FSFS S+++ G SL +  T SL+ S S+  ++P +YCG
Sbjct: 1   MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFD 106
           RGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P      K D
Sbjct: 61  RGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of HG10017285 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 55  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPAPPSPP 100
           AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 29  AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of HG10017285 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.5e-51
Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIST-SSPFSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRASSTASLAIST SSP SIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 AN 122
           A+
Sbjct: 121 AS 122

[Close]

BLAST of HG10017285 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.5e-51
Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIST-SSPFSIPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRASSTASLAIST SSP SIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

Query: 121 AN 122
           A+
Sbjct: 121 AS 122

[Close]

BLAST of HG10017285 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.8e-50
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIS-TSSPFSIPAVYCG 60
           MASLPFGLLQA SQSPTLSPRFFSFSKSETLGTSLRA STASLA S TSSP S+PAVYCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVP PP+PPRKDKF+DDEKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 171

[Close]

BLAST of HG10017285 vs. ExPASy TrEMBL
Match: A0A0A0KXY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAIST-SSPFSIPAVYCG 60
           MASLPFGLLQA SQ    SPRFFSFSKSE LGTSLRASSTASLAIST SSP SIPA+YCG
Sbjct: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVP PPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 118

Query: 121 AN 122
            +
Sbjct: 121 GS 118

[Close]

BLAST of HG10017285 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 104/120 (86.67%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAISTSSPFSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR S+  S   +TSSP SIPAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTS---ATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVP PPSPPRKDKFDDDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of HG10017285 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-31
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MASLPFGLLQAVSQSPTLSPRFFSFSKSETLGTSLRASSTASLAISTSSPFSIPAVYCGR 60
           MASL  G    V+ +  L     S S SET G SL +  T   ++STSS  SIP VYCGR
Sbjct: 1   MASLILGAPPRVTVA--LPSSRLSSSHSETAGVSL-SCFTHQFSLSTSSSSSIPLVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPAPPSPPRKDKFDDDEKIKIEIDESLFA 120
           GD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLF+
Sbjct: 61  GDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 118

Query: 121 N 122
           N
Sbjct: 121 N 118

The following BLAST results are available for this feature:

BLAST of HG10017285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882305.1	1.4e-51	93.44	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	9.3e-51	90.98	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_022151467.1	7.8e-50	91.74	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_004147884.1	2.8e-47	88.52	30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypotheti...	[more]
XP_022931892.1	2.4e-46	86.67	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]

BLAST of HG10017285 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	1.2e-29	62.81	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	5.0e-15	48.11	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	3.6e-05	63.04	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of HG10017285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TU27	4.5e-51	90.98	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	4.5e-51	90.98	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1DDL3	3.8e-50	91.74	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0KXY4	1.3e-47	88.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1	[more]
A0A6J1HRX4	1.1e-46	86.67	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]

BLAST of HG10017285 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	8.7e-31	62.81	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 18..102 e-value: 5.2E-32 score: 110.0
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 59..83 e-value: 1.5E-10 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..108
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017285.1	HG10017285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding