HG10017204 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017204
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNase H domain-containing protein
Location	Chr03: 11913921 .. 11919124 (+)
RNA-Seq Expression	HG10017204
Synteny	HG10017204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGAAGATCTTCTGGAAGCGTGGAAAACTTTCGATTTGACGACGGAGGAAGATAATTCCCTTGTTGGATTAATCCCAGAAATTGTTGGTGATATAAGTGGTGAACTCGATCTCTGTGTGATTGGTAAGCTTCTGTCGTCAAGAATCATTTCGGCTGGTGTAATTAGGCGTGCTTTTGTAAATGCTTGGAGAATGAATCTTGGTTTCAGTGTGGAGAATATAGGCAAGAACCTTTTCCTTTTCAAGTTCTGTAAACAAATTGATAAATAGTGGGTTCTTAAGTCAGGTCCTTGGCTTTTTGATAAGTTTTTGTTGATATTGGAAGAACCTAAATTGGATAAGAAGCCGTCATTGTTGAATTTCAATAAAGTAGCTTTTTGGGTAAGGATCTTGGATATACCTTTTGGTTTCCAGAATAAGATAATGGCAAAAAGGCTTGGAGGGGTGATTGGGGAGGTTTTAGAAGTTGATTGTGATCAGGATGATTTTTGTTGGGGAGAATCTTTACGTATCAAAATTCTACTAGATATTACAAAACCATTGCGAAGGGGAATAAAGATTCAACCATTTAACTATAGTGAAACTGGTTGGGTGAATATCAGATACAAGCATTTACCCGACTTCTGCTATTCGTGCGGTTGTATTGGACACACTGCAAAAGATTGTGATTCAGTGGCTTTTCTTTCTCATTCTGATGTAAGGAAGTCTTTTCAGTATGGTCCTTGGTTGCGTTTTTAGGGGAGCCCCATTCTAAGAAAAAAAAATTTCCTGAGTCAAAAAGTCCATCCAAGAATGTTTCTCCACCTGGAAAAATGTTTGTTGAAGAAGTCTAACCATTATCAAAGATTCAGATGGAGAAAGATTCAGTTGTACCCGCGAATAGTGGGAAGATATTTGAGTTTCAAGCCCAATAGGTATTGAAGGACTCTAGTTTGAAGGAAGGTAAGGCTAAGTCTGCCTTCCCTTTGGCTTCATCATTTTCTTCCCCTTATCATCATGATGGGGTGGATAAAGAATCCTTATTCCCTTGTGGTAGCTCTGACCAATGGATTAAGAAAGGTCCTATGGTTAATTCCAGATGCCCGTCAGCAGAAAGTGAGGGTACGAGTTCTTTTGTCCAACCTGTTAAAAGATGGAAAAGGAAAGAAAGATTGAATGTTGCTGAAACTCCTATGAAGGATCTGGTGAAGTTAAATAAACGAAAGGATCCAGGTATCACATCTAATAATGCTTCACAAAGGAGCAAGGGTATTCCTGATATTAACCTTGAGTATAAGGTAGAGGATTTTATTTTGGCAGAGGCTGTTGGTCAGCCCTGCAGGGGGCCATGAATACCATTTGTTGGAACGCTCGGGGTTTGGGCAACCCCAGAGCGTTTCGTTCTTTGTATGGTCTTGTCTAAGCGAGGAAACCTGAAATCTTGTTCCTTTCTGAAACTAAATGTAGTTCTGATGTGTGTATGAAATTCAAGTTCAAGTGCAACTTTGTTGGTTGCTTGCCAGTTGCTAGTGTTGGTGCTAAAGGAGGTCTCTGCTTATATTGGAAGGATTCTGTTTCTGTGGATATTAAATCCTTCTCAGCTCATCATATTGATGCTGATATCTGTTGGGAGGGCTTAAGATGGAGATTTTCTGGTTTGTATGGTTATCCTGAAGGCAATAGGAAGATCCTTTCTTGGGATCTTATTCGAAGACTTGATGTTGGCAATGATTTACCTTGGGTAGTAGGGGGCGATTTGAATGAAATCCTGAGTGATAATGAGAAAAAGGGTGGCCTCCCAAAGGATACAGTCTATTTGGAACGATTTAGAGATTGTCTTAGTGATTGTGGTTTGATTGATCTTGGCTTTGGGGGTTCAATTTTCACGTGGAATTGTGTCAGAAATAATTCAAGAATTTGGGAGCGGTTAGATCGTTTTGTAGGCAATAATGCTTTCTGTGATTTATTCAAGACAAAAAATGTTAGGCACCTGGATTGGCTTTTCTCGGACCATCGCCCTATTGAACTCTTTGTTTCAAATTCATCAATTCGATTTCATCATAGAAGAAGGCCTTTTAAATTTGAAGAATTCTGGACCTTCCATAAGGAATGTGGGCAGATTATTCAAAGCTCAGGGAATTGGGCTCCTTCAGATGGTCATGTTTGTTTGAGCTATCTGGATGGGGCTGGAAGCTAAATAAGGAGTTGAAAACTAAAATTGATGATTGTAAAAGAGCTTTACAAGCAGCCTATGATTGTGCTCCAAATGTTGATTTTAATAGGATTCATGAGATTGAATTTGAGTTAGAACATCTTCTTGAACAAGAAGAAGTTTATTGGAAACAAAGGTCAAGAGAGGAGTGGCTTAAATGGGGCGACAGAAACACCAAATGGTTTCATAAGAAAGCATCTCTGAGGAAAAAGAAAAATGAAATTAGAGGTATTATGTCTGTAGATGGGATTTGGTCAGAGGAGGATAGTATTATTGAAGATGCCTTTATTTCCCACTTTAACTCTTTGTTTACTTCTACAAATCCAAGCAGTGAATCGATGTCTGATGTTCTTAGATGGATTAAGCCTTGTGTTACTACAAAAATGAATGATGTGCTTACAGCTAAGTTTTCTAAAGAGGATATTGAAGAGACGGTCCAACAGCTATTCCCTACAAAAGCTCCTGGGCTAGATGGTTTCCCTGCAATCTTTTACCAAAAATATTGGAATGTGGTGGGTCAAAAGACTTCAGTTGATGCCTGGAGTTTCTAAATAATTACAGAAGTATTGAGGATTGGAATTCTACTAATATTGTCTTAATTCCAAAAATTTCTAAGTCTCAGGTAGTTGGTGATTTTAGGCCTATAAGTCTCTGTAATGTGAGCTATAAAATTGTCTCTAAGGCCTTAGCAAACATATTTAAAAGGATCCTGAATGAGATTATTTCTGCCCCTCAATCAGCTTTTGTTCCTGGGGAGGGCTATTACTGATAACATCATGATTGGTCACGAGTGTATCCATTCTATCAAAAACCAAAAAGTTGGTAAAAAAGGGAGCTGCTGCCATTAAACTGGATCTTAGCAAGGCATACGACCGTGTTGAATGGTCGTTTTTAGAAGCTATGATGTGGAAGAAGCTATGATGTGGAAGATGGGTTTTCACCCAAGCTGGATTAAGTTGATTATCAATTGTATCTCTTCAGTACGTTTTTCTATAGTATTGAATGGAGAATCTAAAGGGCAAATCATTCCTAAAAGAGGCCTAAGACAAGGTGATTCTATCTCTCCCTATCTTTTTCTTATTGTTGCTAATGGTCTTTCTATTTGTATGCAGGCTGCCCAAGATCATAATGATATCACAGGCTTGAAGATCTCAACCACATGCCCTGTGATAACTCATTTGCAGTTCGCGGATGATAGTCTTTTGTTTTGTGGGGCAGATGAACGTAATCTTTCCAATCTAAAGTGCATCCTTCTTCGATATGAAGTAGCGTCTGGAGCGTTGATCAATTATTCAAAATCAGCAATGATCATCTCTCCTATGTGAATAAGAACAAACGGGAGTTTCTAAGTAGTATCTTAGGGGTGCAGTTGGTTGATGATCTCGGTTTGTATCTTGGAATTCCATCCTTTCTTTCAAGAAGCAAAAGTAGAGATTTTAAATATCTGGTGGATAAAGTATGGAAAGCAGTGAATGGATGGAAGAGGGCTTTTTTCTCTGTGGGAGGCAAGGAGGTCCTTATTAAAAGTGTGGGTCAAGCCATACCTACTTATGGTATGAGTATCTTTAAACTTCCTAAAAGTTTTTGCTCGGCTTTAACTCGTATGTTCGCTAAATTCTGGTGGGGTTCCTCTGACTCAAAGAAGAAAATTCATTGGCTAAGTTGGGATCAGATGTGTTTGCCTAAAGCTTTGGGAGGCTTAAATTTCAGAAACTTGGAGGGGTTTAACTTGGCTTTGGTTGCTAAACAGTTTTAGAAGCTTCTAGTGTCTCTAGACAGTTTGGTTTCAAGGGTTTTGAAAGGGATTTATTATCCTAATTGTTCTTTAATGGAGGCTGTGTTGGGATCAAATCCATCTTACCTTTGGAGGAGTTGTGATTTTTTAAAAGAGGGTCTTCGGTTTAGAGTGGCTAAGGGGACATCCATAAGGGCTTTCTATGACCCGTGGATCCCAAGAGAGCTTACTTTTAAACCTCGTTGTATTAACAATGAGTTTCAAAATTGTTTGGTGGCAGATTTTATTGATCAAAATGGTTACTGGAATACTGACCTTCTTAAAAAACCTTGCAGCCCAGAGGATGTTGATCTGATAATTCGTATGCCTATCAATATAAGATTAGAAGATAAATTGATTTGGCATTTTGAGAAATCGGGAATTTATTCAGTTAAGAGTGGTTACAAGGCCTTTCAGAAGTTGAAGCTATGTGTTAATTCTCCCAGTTCTAATCCTATGGAAGCTGTCTGGAAGAATGTCTGGAAGCTAAAAGTACCTCCCAAGGTTAAACATTTTATATGGAGAGCCCTTAAAAACTTTATCCCTACTTATGGGAATCTGGTGAAAAAAGGGGTGGATGCTTCCCCTTGGTGTCCGTTGTGTTCTAATAATTTTGAGTCTACAGACCATGCTCTTTTCTCTTGCAACAGGGCTCATTCTATTTGGAAGTTGGTTTCTGTGAATGGTATAATAAGGAGGAATTATAACAACAGCTTTGTTGATAGGTGGTTTGATATTAATGCATGCTGTGATGGAGAGGAATTGGACCTTTATGCGATTACTTGTTGGGCTATTTGGACTGATAGGAACAATATCATCCATAATAAACCAATTCCGCCTGCTGATGTTAGAAGTAAATGGATCCTTCAGTACAAAAATGAATATTACTCGGCGATGTGTCAGAAGTTAGTTCATGTTGAAAAGCCTTTATTGTGTTCTAAGAACTCTCCTTCAGTTTGGTCTCGTCCAGTTCTAGGCTGGCACAAGATAAACGTGGATGTTGTGTCGGATTTGGTTTCAAATACGACTGGGTTTGGTGTGGCTATCCGTGATGCTTCTGGTAGTTTAGTAGCTTTGTCTGCTTCAAGGGTGGATTGGTGTTTGCCTGATCCTCTCGCTGAATTGAGGGCAATTCTTGAAGGAATAAAATTGGCTGTGGAAATTAATCCTAATGGTAAATTTATTCTTGAATCAGATTCTCTCCAGGCGGTCAATCTGGTGTGGAAGAAATGA

mRNA sequence

ATGGAAACTGAAGATCTTCTGGAAGCGTGGAAAACTTTCGATTTGACGACGGAGGAAGATAATTCCCTTGTTGGATTAATCCCAGAAATTGTTGGTGATATAAGTGGTGAACTCGATCTCTGTGTGATTGGTAAGGCTAAGTCTGCCTTCCCTTTGGCTTCATCATTTTCTTCCCCTTATCATCATGATGGGGTGGATAAAGAATCCTTATTCCCTTGTGGTAGCTCTGACCAATGGATTAAGAAAGGTCCTATGGTTAATTCCAGATGCCCGTCAGCAGAAAGTGAGGGTACGAGTTCTTTTGTCCAACCTGTTAAAAGATGGAAAAGGAAAGAAAGATTGAATGTTGCTGAAACTCCTATGAAGGATCTGGTGAAGTTAAATAAACGAAAGGATCCAGGTATCACATCTAATAATGCTTCACAAAGGAGCAAGGGTATTCCTGATATTAACCTTGAGTATAAGAAGTTAGTTCATGTTGAAAAGCCTTTATTGTGTTCTAAGAACTCTCCTTCAGTTTGGTCTCGTCCAGTTCTAGGCTGGCACAAGATAAACGTGGATGTTGTGTCGGATTTGGTTTCAAATACGACTGGGTTTGGTGTGGCTATCCGTGATGCTTCTGGTAGTTTAGTAGCTTTGTCTGCTTCAAGGGTGGATTGGTGTTTGCCTGATCCTCTCGCTGAATTGAGGGCAATTCTTGAAGGAATAAAATTGGCTGTGGAAATTAATCCTAATGGTAAATTTATTCTTGAATCAGATTCTCTCCAGGCGGTCAATCTGGTGTGGAAGAAATGA

Coding sequence (CDS)

ATGGAAACTGAAGATCTTCTGGAAGCGTGGAAAACTTTCGATTTGACGACGGAGGAAGATAATTCCCTTGTTGGATTAATCCCAGAAATTGTTGGTGATATAAGTGGTGAACTCGATCTCTGTGTGATTGGTAAGGCTAAGTCTGCCTTCCCTTTGGCTTCATCATTTTCTTCCCCTTATCATCATGATGGGGTGGATAAAGAATCCTTATTCCCTTGTGGTAGCTCTGACCAATGGATTAAGAAAGGTCCTATGGTTAATTCCAGATGCCCGTCAGCAGAAAGTGAGGGTACGAGTTCTTTTGTCCAACCTGTTAAAAGATGGAAAAGGAAAGAAAGATTGAATGTTGCTGAAACTCCTATGAAGGATCTGGTGAAGTTAAATAAACGAAAGGATCCAGGTATCACATCTAATAATGCTTCACAAAGGAGCAAGGGTATTCCTGATATTAACCTTGAGTATAAGAAGTTAGTTCATGTTGAAAAGCCTTTATTGTGTTCTAAGAACTCTCCTTCAGTTTGGTCTCGTCCAGTTCTAGGCTGGCACAAGATAAACGTGGATGTTGTGTCGGATTTGGTTTCAAATACGACTGGGTTTGGTGTGGCTATCCGTGATGCTTCTGGTAGTTTAGTAGCTTTGTCTGCTTCAAGGGTGGATTGGTGTTTGCCTGATCCTCTCGCTGAATTGAGGGCAATTCTTGAAGGAATAAAATTGGCTGTGGAAATTAATCCTAATGGTAAATTTATTCTTGAATCAGATTCTCTCCAGGCGGTCAATCTGGTGTGGAAGAAATGA

Protein sequence

METEDLLEAWKTFDLTTEEDNSLVGLIPEIVGDISGELDLCVIGKAKSAFPLASSFSSPYHHDGVDKESLFPCGSSDQWIKKGPMVNSRCPSAESEGTSSFVQPVKRWKRKERLNVAETPMKDLVKLNKRKDPGITSNNASQRSKGIPDINLEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGIKLAVEINPNGKFILESDSLQAVNLVWKK

Homology

[Close]

BLAST of HG10017204 vs. NCBI nr
Match: AAX92970.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >AAX96036.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >ABA92841.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-07
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 152 LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLV 211
           +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++
Sbjct: 613 MENKKKRNLEASEICKIQPPVPWTKPQLGWMKLNIDGSFDASLNQGGIGAILRNNAGSVI 672

Query: 212 ALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFILESDSLQAVNL 261
             +   ++ C     AEL A  EGI +A++  + P     +E+DSL+AVNL
Sbjct: 673 FSACGFIERCSSALEAELLACKEGIIMALQWTLLP---ICIETDSLEAVNL 720

[Close]

BLAST of HG10017204 vs. NCBI nr
Match: EEC68026.1 (hypothetical protein OsI_35837 [Oryza sativa Indica Group])

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-07
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 152 LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLV 211
           +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++
Sbjct: 636 MENKKKRNLEASEICKIQPPVPWTKPQLGWMKLNIDGSFDASLNQGGIGAILRNNAGSVI 695

Query: 212 ALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFILESDSLQAVNL 261
             +   ++ C     AEL A  EGI +A++  + P     +E+D L+AVNL
Sbjct: 696 FSACGFIERCRSALEAELLACKEGIIMALQWTLLP---ICIETDCLEAVNL 743

[Close]

BLAST of HG10017204 vs. NCBI nr
Match: XP_023876543.1 (uncharacterized protein LOC111988969 [Quercus suber])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-06
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 170 SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAEL 229
           SP+ W  P  G+HKINVD  S  + N++  GV IRD+ G +VA  +  +  C    L E+
Sbjct: 96  SPTCWVPPPHGFHKINVDGASSELDNSSSIGVVIRDSHGQIVAALSKPLQACFNAELTEV 155

Query: 230 RAILEGIKLAVEINPNGKFILESDSLQAVNLVWKK 265
            A+  G  LA E+  + K I E DSL  +  V  K
Sbjct: 156 MALEHGALLAQELQLS-KVIFELDSLNVIQAVHDK 189

[Close]

BLAST of HG10017204 vs. NCBI nr
Match: XP_019191714.1 (PREDICTED: uncharacterized protein LOC109186242 [Ipomoea nil])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-06
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 174 WSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAIL 233
           WS+P  G+HK+NVD   D ++   GFG  IRD  G+ VA    + D       AE  AI 
Sbjct: 121 WSKPQEGFHKLNVDAAIDSINGKMGFGCVIRDEHGTFVAARGIQWDGVFSPREAEATAIR 180

Query: 234 EGIKLAVEINPNGKFILESDSLQAVN 260
           E +    E+N N K  +E+DSLQ VN
Sbjct: 181 EALSWIKELNLN-KVSVETDSLQVVN 205

[Close]

BLAST of HG10017204 vs. NCBI nr
Match: XP_038874893.1 (uncharacterized protein LOC120067397 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-06
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 177 PVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAELRAILEGI 236
           P   W K NVD       N TG GV+IRD+SGSLVA  AS ++   P+ LAE+RAILEGI
Sbjct: 4   PHQDWFKANVDAGWRSSFNLTGIGVSIRDSSGSLVATVASILNIIFPETLAEIRAILEGI 63

Query: 237 KLAVEI 243
           K+A  I
Sbjct: 64  KVASRI 69

[Close]

BLAST of HG10017204 vs. ExPASy TrEMBL
Match: Q2R6V8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g18720 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 152 LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLV 211
           +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++
Sbjct: 613 MENKKKRNLEASEICKIQPPVPWTKPQLGWMKLNIDGSFDASLNQGGIGAILRNNAGSVI 672

Query: 212 ALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFILESDSLQAVNL 261
             +   ++ C     AEL A  EGI +A++  + P     +E+DSL+AVNL
Sbjct: 673 FSACGFIERCSSALEAELLACKEGIIMALQWTLLP---ICIETDSLEAVNL 720

[Close]

BLAST of HG10017204 vs. ExPASy TrEMBL
Match: Q53MP1 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g18720 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 152 LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLV 211
           +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++
Sbjct: 613 MENKKKRNLEASEICKIQPPVPWTKPQLGWMKLNIDGSFDASLNQGGIGAILRNNAGSVI 672

Query: 212 ALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFILESDSLQAVNL 261
             +   ++ C     AEL A  EGI +A++  + P     +E+DSL+AVNL
Sbjct: 673 FSACGFIERCSSALEAELLACKEGIIMALQWTLLP---ICIETDSLEAVNL 720

[Close]

BLAST of HG10017204 vs. ExPASy TrEMBL
Match: B8BK40 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35837 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 152 LEYKKLVHVEKPLLCSKNSPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLV 211
           +E KK  ++E   +C    P  W++P LGW K+N+D   D   N  G G  +R+ +GS++
Sbjct: 636 MENKKKRNLEASEICKIQPPVPWTKPQLGWMKLNIDGSFDASLNQGGIGAILRNNAGSVI 695

Query: 212 ALSASRVDWCLPDPLAELRAILEGIKLAVE--INPNGKFILESDSLQAVNL 261
             +   ++ C     AEL A  EGI +A++  + P     +E+D L+AVNL
Sbjct: 696 FSACGFIERCRSALEAELLACKEGIIMALQWTLLP---ICIETDCLEAVNL 743

[Close]

BLAST of HG10017204 vs. ExPASy TrEMBL
Match: A0A6A6M582 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_009686 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-06
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 170 SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAEL 229
           +P  W +P   W K+NVD+ +++ S  TG G+ +R+  GS VA   SR+       +AE+
Sbjct: 243 TPQEWKKPGPNWVKLNVDIATNVNSGWTGIGMVVRNEMGSFVACKISRMVGLFSPTIAEI 302

Query: 230 RAILEGIKLAVEINPNGKFILESDSLQAVNLV 262
             + E +   ++ N     I+ESD+LQ VN++
Sbjct: 303 MGVREALSW-IKDNNWQNVIVESDNLQVVNVL 333

[Close]

BLAST of HG10017204 vs. ExPASy TrEMBL
Match: A0A6A6LAJ6 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_017869 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-06
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 170 SPSVWSRPVLGWHKINVDVVSDLVSNTTGFGVAIRDASGSLVALSASRVDWCLPDPLAEL 229
           +P  W +P   W K+NVD+ +++ S  TG G+ +R+  GS VA   SR+       +AE+
Sbjct: 243 TPQEWKKPGPNWVKLNVDIATNVNSGWTGIGMVVRNEMGSFVACKISRMVGLFSPTIAEI 302

Query: 230 RAILEGIKLAVEINPNGKFILESDSLQAVNLV 262
             + E +   ++ N     I+ESD+LQ VN++
Sbjct: 303 MGVREALSW-IKDNNWQNVIVESDNLQVVNVL 333

The following BLAST results are available for this feature:

BLAST of HG10017204 vs. NCBI nr


Match Name	E-value	Identity	Description
AAX92970.1	2.1e-07	35.14	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] >A...	[more]
EEC68026.1	8.0e-07	34.23	hypothetical protein OsI_35837 [Oryza sativa Indica Group]	[more]
XP_023876543.1	1.0e-06	38.95	uncharacterized protein LOC111988969 [Quercus suber]	[more]
XP_019191714.1	1.4e-06	41.86	PREDICTED: uncharacterized protein LOC109186242 [Ipomoea nil]	[more]
XP_038874893.1	3.1e-06	54.55	uncharacterized protein LOC120067397 [Benincasa hispida]	[more]

BLAST of HG10017204 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10017204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q2R6V8	1.0e-07	35.14	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
Q53MP1	1.0e-07	35.14	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8BK40	3.9e-07	34.23	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35837 PE=4...	[more]
A0A6A6M582	5.6e-06	33.70	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_009686 PE=4 SV=1	[more]
A0A6A6LAJ6	5.6e-06	33.70	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_017869 PE=4 SV=1	[more]

BLAST of HG10017204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 186..261 e-value: 5.7E-8 score: 32.6
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 184..264 e-value: 1.27384E-10 score: 55.7832
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 180..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017204.1	HG10017204.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0140096	catalytic activity, acting on a protein
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016791	phosphatase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity