HG10017038 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10017038
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RZFP34-like
Location	Chr03: 10509534 .. 10510176 (+)
RNA-Seq Expression	HG10017038
Synteny	HG10017038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGACATTTCCGTTTTGCCATGTGGACACACTATTCATTTAGAATGTGTGAAGGAGATGGAGCAACGCTTACAGTTAGTCCATCTCTTCTTTATTACAGAAAATCCCTTTTGTTCTTTCTGATCATTTGAATGAGTTGGCAAAACCATTATTTTGTATCTTTACTGGTTGCAATAATAAATCTGCAGATACACATGCCCTGTTTGCTCAAAATCCTATTGCGATATGTCGAGCGTGTGGGAGAAACTAGATCATGAGGTTCGGACACTTATAAACCAACCAAAGAACAACAATGAAACAACATTCACATTATCCTAACATATTTTCACTTAAAATCTCAGGTCGCATCGACGCCGATGCCACAAATGTACCAACATAAAATGGTAAGTACTGGGTGTAAACTGTAAAACAATGTGTGGCTTCTCAAAAGAAACTGCTGATTTATTTGATGAACTGAAAATTTTTCTTCTTTACTTATTATGATCAGGTTTGGATTCTCTGTAATGACTGTAGTGAGATATCAGAGGTTAATTATCACATTGTGGCACACAAGTGCCTGAAATGCAAGTCCTATAATACAAGGCTGACCCAAGGAGGGCCCTCTTCATGTTCACCAAGGATTGCTCAAATAGTGAGATGA

mRNA sequence

ATGAGCGACATTTCCGTTTTGCCATGTGGACACACTATTCATTTAGAATGTGTGAAGGAGATGGAGCAACGCTTACAATACACATGCCCTGTTTGCTCAAAATCCTATTGCGATATGTCGAGCGTGTGGGAGAAACTAGATCATGAGGTCGCATCGACGCCGATGCCACAAATGTACCAACATAAAATGGTTTGGATTCTCTGTAATGACTGTAGTGAGATATCAGAGGTTAATTATCACATTGTGGCACACAAGTGCCTGAAATGCAAGTCCTATAATACAAGGCTGACCCAAGGAGGGCCCTCTTCATGTTCACCAAGGATTGCTCAAATAGTGAGATGA

Coding sequence (CDS)

ATGAGCGACATTTCCGTTTTGCCATGTGGACACACTATTCATTTAGAATGTGTGAAGGAGATGGAGCAACGCTTACAATACACATGCCCTGTTTGCTCAAAATCCTATTGCGATATGTCGAGCGTGTGGGAGAAACTAGATCATGAGGTCGCATCGACGCCGATGCCACAAATGTACCAACATAAAATGGTTTGGATTCTCTGTAATGACTGTAGTGAGATATCAGAGGTTAATTATCACATTGTGGCACACAAGTGCCTGAAATGCAAGTCCTATAATACAAGGCTGACCCAAGGAGGGCCCTCTTCATGTTCACCAAGGATTGCTCAAATAGTGAGATGA

Protein sequence

MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQHKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR

Homology

[Close]

BLAST of HG10017038 vs. NCBI nr
Match: XP_008462499.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo] >XP_008462500.1 PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 2.9e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 176 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. NCBI nr
Match: XP_004143281.1 (E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >XP_011657675.1 E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >KGN48202.1 hypothetical protein Csa_003793 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 2.9e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 176 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. NCBI nr
Match: XP_031743612.1 (E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucumis sativus] >XP_031743613.1 E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 2.9e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 171 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 230

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 231 HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 283

[Close]

BLAST of HG10017038 vs. NCBI nr
Match: XP_023517345.1 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RZFP34-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.4e-61
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCD+SSVWEKLDHEVASTPMPQMYQ
Sbjct: 196 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDLSSVWEKLDHEVASTPMPQMYQ 255

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKC+KCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 256 HKMVWILCNDCSEISEVNYHIVAHKCVKCKSYNTRLTQGGPSSCSPRIAQIVR 308

[Close]

BLAST of HG10017038 vs. NCBI nr
Match: KAG6595218.1 (Aquaporin TIP1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 1.9e-61
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           +SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 437 ISDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 496

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKC+KCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 497 HKMVWILCNDCSEISEVNYHIVAHKCVKCKSYNTRLTQGGPSSCSPRIAQIVR 549

[Close]

BLAST of HG10017038 vs. ExPASy Swiss-Prot
Match: Q9FFB6 (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-38
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 3   DISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQHK 62
           DI+VL CGHT+HLEC K+M    +YTCPVCSKS CDMS++W+KLD EVA+ PMP+MY++K
Sbjct: 176 DITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENK 235

Query: 63  MVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPS--SCSPRIAQIV 113
           MVWILCNDC   + V +H++AHKC  C SYNTR TQ G    SCS  + Q+V
Sbjct: 236 MVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQRGSDSHSCSSGMPQVV 287

[Close]

BLAST of HG10017038 vs. ExPASy Swiss-Prot
Match: Q5JL96 (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.1e-31
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 2   SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQH 61
           +D+SVLPCGHTIH++C++EME+  Q+ CP+CSKS CDMS  WE+LD E+A+  +     +
Sbjct: 209 NDVSVLPCGHTIHVKCLREMEEHCQFACPLCSKSVCDMSKAWERLDEELAT--ISDTCDN 268

Query: 62  KMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTR 96
           KMV ILCNDC   SEV +H++AHKC KCKSYNTR
Sbjct: 269 KMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTR 300

[Close]

BLAST of HG10017038 vs. ExPASy Swiss-Prot
Match: Q8VZK0 (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-28
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           + D +V+ CGHT+H+EC  EM +R ++ CP+CS+S  DMS  W++LD E+ +T MP  Y+
Sbjct: 164 LKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYR 223

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTR 96
            K VWILCNDC++ +EV++HI+  KC  C+SYNTR
Sbjct: 224 DKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 258

[Close]

BLAST of HG10017038 vs. ExPASy Swiss-Prot
Match: Q96PM5 (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 6   VLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQHKMVW 65
           VLPCGH +H  C +EM +   Y CP+C  S  DM+  W +LD EVA TPMP  YQ+  V 
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVD 220

Query: 66  ILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQG 100
           ILCNDC+  S V +HI+  KC  C+SYNT    G
Sbjct: 221 ILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253

[Close]

BLAST of HG10017038 vs. ExPASy Swiss-Prot
Match: Q9CR50 (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-21
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 6   VLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQHKMVW 65
           VLPCGH +H  C +EM +   Y CP+C  S  DM+  W +LD EVA TPMP  YQ+  V 
Sbjct: 161 VLPCGHLLHRTCYEEMLKE-GYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVD 220

Query: 66  ILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQG 100
           ILCNDC+  S V +HI+  KC  C SYNT    G
Sbjct: 221 ILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253

[Close]

BLAST of HG10017038 vs. ExPASy TrEMBL
Match: A0A1S3CHL2 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103500836 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 176 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. ExPASy TrEMBL
Match: A0A0A0KIG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G448100 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 176 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. ExPASy TrEMBL
Match: A0A5A7V9A0 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00080 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-61
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ
Sbjct: 175 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 234

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
            KMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 235 DKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 287

[Close]

BLAST of HG10017038 vs. ExPASy TrEMBL
Match: A0A6J1I9L5 (E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita maxima OX=3661 GN=LOC111471282 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.0e-61
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMY 
Sbjct: 176 MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYL 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKC+KCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCVKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. ExPASy TrEMBL
Match: A0A6J1HG84 (E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita moschata OX=3662 GN=LOC111463216 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.6e-61
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           +SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTP+PQMYQ
Sbjct: 176 ISDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPIPQMYQ 235

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPSSCSPRIAQIVR 114
           HKMVWILCNDCSEISEVNYHIVAHKC+KCKSYNTRLTQGGPSSCSPRIAQIVR
Sbjct: 236 HKMVWILCNDCSEISEVNYHIVAHKCVKCKSYNTRLTQGGPSSCSPRIAQIVR 288

[Close]

BLAST of HG10017038 vs. TAIR 10
Match: AT5G22920.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-39
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 3   DISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQHK 62
           DI+VL CGHT+HLEC K+M    +YTCPVCSKS CDMS++W+KLD EVA+ PMP+MY++K
Sbjct: 176 DITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENK 235

Query: 63  MVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQGGPS--SCSPRIAQIV 113
           MVWILCNDC   + V +H++AHKC  C SYNTR TQ G    SCS  + Q+V
Sbjct: 236 MVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQRGSDSHSCSSGMPQVV 287

[Close]

BLAST of HG10017038 vs. TAIR 10
Match: AT5G25560.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-37
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 2   SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQH 61
           +D++VLPCGHTIH +C++EM    QY CP+CSKS CDMS VWEK D E+A+TPMP+ YQ+
Sbjct: 211 NDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQN 270

Query: 62  KMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQG 100
           +MV ILCNDC + +EV YH+VA KC  CKSYNTR T+G
Sbjct: 271 RMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 308

[Close]

BLAST of HG10017038 vs. TAIR 10
Match: AT5G25560.3 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-37
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 2   SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQH 61
           +D++VLPCGHTIH +C++EM    QY CP+CSKS CDMS VWEK D E+A+TPMP+ YQ+
Sbjct: 221 NDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQN 280

Query: 62  KMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQG 100
           +MV ILCNDC + +EV YH+VA KC  CKSYNTR T+G
Sbjct: 281 RMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 318

[Close]

BLAST of HG10017038 vs. TAIR 10
Match: AT5G25560.4 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-37
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 2   SDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQH 61
           +D++VLPCGHTIH +C++EM    QY CP+CSKS CDMS VWEK D E+A+TPMP+ YQ+
Sbjct: 206 NDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQN 265

Query: 62  KMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTRLTQG 100
           +MV ILCNDC + +EV YH+VA KC  CKSYNTR T+G
Sbjct: 266 RMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 303

[Close]

BLAST of HG10017038 vs. TAIR 10
Match: AT5G18650.1 (CHY-type/CTCHY-type/RING-type Zinc finger protein )

HSP 1 Score: 127.1 bits (318), Expect = 9.0e-30
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1   MSDISVLPCGHTIHLECVKEMEQRLQYTCPVCSKSYCDMSSVWEKLDHEVASTPMPQMYQ 60
           + D +V+ CGHT+H+EC  EM +R ++ CP+CS+S  DMS  W++LD E+ +T MP  Y+
Sbjct: 164 LKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYR 223

Query: 61  HKMVWILCNDCSEISEVNYHIVAHKCLKCKSYNTR 96
            K VWILCNDC++ +EV++HI+  KC  C+SYNTR
Sbjct: 224 DKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 258

The following BLAST results are available for this feature:

BLAST of HG10017038 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462499.1	2.9e-62	100.00	PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo] >XP_008462500.1...	[more]
XP_004143281.1	2.9e-62	100.00	E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucumis sativus] >XP_011657675.1 ...	[more]
XP_031743612.1	2.9e-62	100.00	E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucumis sativus] >XP_031743613.1 ...	[more]
XP_023517345.1	1.4e-61	98.23	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RZFP34-like [Cucurbita pepo sub...	[more]
KAG6595218.1	1.9e-61	98.23	Aquaporin TIP1-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10017038 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFB6	5.1e-38	61.61	E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=...	[more]
Q5JL96	2.1e-31	60.64	Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q8VZK0	1.3e-28	51.58	E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 ...	[more]
Q96PM5	2.5e-21	51.06	RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9...	[more]
Q9CR50	5.7e-21	51.06	RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=1...	[more]

BLAST of HG10017038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHL2	1.4e-62	100.00	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103500836 P...	[more]
A0A0A0KIG3	1.4e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G448100 PE=4 SV=1	[more]
A0A5A7V9A0	1.5e-61	99.12	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1I9L5	2.0e-61	98.23	E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita maxima OX=3661 GN=LOC111471...	[more]
A0A6J1HG84	2.6e-61	97.35	E3 ubiquitin-protein ligase RZFP34-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of HG10017038 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22920.1	3.6e-39	61.61	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.1	1.5e-37	64.29	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.3	1.5e-37	64.29	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G25560.4	1.5e-37	64.29	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]
AT5G18650.1	9.0e-30	51.58	CHY-type/CTCHY-type/RING-type Zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 4..32 e-value: 7.5E-5 score: 22.5
None	No IPR available	GENE3D	2.20.28.10		coord: 61..103 e-value: 2.1E-18 score: 67.3
None	No IPR available	PANTHER	PTHR21319	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	coord: 2..111
None	No IPR available	PANTHER	PTHR21319:SF54	E3 UBIQUITIN-PROTEIN LIGASE RZFP34	coord: 2..111
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 4..39
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..45 e-value: 5.4E-10 score: 40.4
IPR039512	RCHY1, zinc-ribbon	PFAM	PF14599	zinc_ribbon_6	coord: 37..95 e-value: 2.7E-26 score: 91.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 6..33 score: 8.550227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10017038.1	HG10017038.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding