HG10016952 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016952
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBric-a-brac protein
LocationChr03: 9617716 .. 9617904 (+)
RNA-Seq ExpressionHG10016952
SyntenyHG10016952
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTTGTCGCCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCGTTTGAGGAAGCGTCACCACGATTAA

mRNA sequence

ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTTGTCGCCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCGTTTGAGGAAGCGTCACCACGATTAA

Coding sequence (CDS)

ATGGGACTGTGGCTGAACCCTCTCCCTCGCGGCCAGCTAGCAACTAGCGCCTGCTTCTTTGTCGCCGGAGTCTCCTTCTTCGCCGCCGGAGCTTACCTCTCTTTCCTCAACATCGCCCCTCAGCAAGCTCGAACCAAAGCTCGTGATGATTTTGTCAAGGAGCGTTTGAGGAAGCGTCACCACGATTAA

Protein sequence

MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRHHD
Homology
BLAST of HG10016952 vs. NCBI nr
Match: XP_038880929.1 (uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 uncharacterized protein LOC120072605 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH
Sbjct: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. NCBI nr
Match: XP_022132375.1 (uncharacterized protein LOC111005249 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWL+PLPRGQLATSACFFVAGVSFFA GAY S+LNIAPQQARTKARDDFVKERLRKRH
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. NCBI nr
Match: XP_023517718.1 (uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 3.9e-21
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWLNPLPRGQL TSAC+FVAG SFF  GAYLS++N+ PQQARTKAR DFV+ERLR+RH
Sbjct: 1  MGLWLNPLPRGQLGTSACYFVAGFSFFVVGAYLSYVNVGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. NCBI nr
Match: XP_016902886.1 (PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hypothetical protein E6C27_scaffold541G00820 [Cucumis melo var. makuwa] >TYK07433.1 hypothetical protein E5676_scaffold202G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.1e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWLNPLPRGQL TSACFF+ GVS FAAGA+LS+LNI PQQARTKARDDFV+ERLRKRH
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

BLAST of HG10016952 vs. NCBI nr
Match: XP_022962859.1 (uncharacterized protein LOC111463226 [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MG WLNPLPRGQL TSAC+FVAG S FA GAYLS++NI PQQARTKAR DFV+ERLR+RH
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. ExPASy TrEMBL
Match: A0A6J1BSA7 (uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005249 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWL+PLPRGQLATSACFFVAGVSFFA GAY S+LNIAPQQARTKARDDFVKERLRKRH
Sbjct: 1  MGLWLDPLPRGQLATSACFFVAGVSFFAVGAYFSYLNIAPQQARTKARDDFVKERLRKRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. ExPASy TrEMBL
Match: A0A5D3C6A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001620 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWLNPLPRGQL TSACFF+ GVS FAAGA+LS+LNI PQQARTKARDDFV+ERLRKRH
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

BLAST of HG10016952 vs. ExPASy TrEMBL
Match: A0A1S4E3S6 (uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MGLWLNPLPRGQL TSACFF+ GVS FAAGA+LS+LNI PQQARTKARDDFV+ERLRKRH
Sbjct: 1  MGLWLNPLPRGQLRTSACFFIVGVSLFAAGAHLSYLNIGPQQARTKARDDFVRERLRKRH 60

BLAST of HG10016952 vs. ExPASy TrEMBL
Match: A0A6J1HI96 (uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC111463226 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKRH 60
          MG WLNPLPRGQL TSAC+FVAG S FA GAYLS++NI PQQARTKAR DFV+ERLR+RH
Sbjct: 1  MGRWLNPLPRGQLGTSACYFVAGFSLFAVGAYLSYVNIGPQQARTKARSDFVRERLRRRH 60

Query: 61 HD 63
          HD
Sbjct: 61 HD 62

BLAST of HG10016952 vs. ExPASy TrEMBL
Match: A0A0A0KEZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 1  MGLWLNPLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRKR 60
          MGLWLNPLP GQL  SAC F+ G+S FAAGA+LS+LNI PQQARTKAR DFVKERLR+R
Sbjct: 1  MGLWLNPLPSGQLRNSACVFIVGLSLFAAGAHLSYLNIGPQQARTKARYDFVKERLRRR 59

BLAST of HG10016952 vs. TAIR 10
Match: AT3G11591.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 7  PLPRGQLATSACFFVAGVSFFAAGAYLSFLNIAPQQARTKARDDFVKERLRK 59
          P  R QL  S  FF AGVS F AGAYLS  NI+PQQAR KAR+DFVK+R+RK
Sbjct: 8  PPTRRQLVVSVGFFAAGVSLFVAGAYLSLANISPQQARVKARNDFVKDRIRK 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880929.14.0e-26100.00uncharacterized protein LOC120072605 [Benincasa hispida] >XP_038880930.1 unchara... [more]
XP_022132375.12.9e-2493.55uncharacterized protein LOC111005249 [Momordica charantia][more]
XP_023517718.13.9e-2180.65uncharacterized protein LOC111781390 [Cucurbita pepo subsp. pepo][more]
XP_016902886.15.1e-2186.67PREDICTED: uncharacterized protein LOC103500918 [Cucumis melo] >KAA0025233.1 hyp... [more]
XP_022962859.12.5e-2080.65uncharacterized protein LOC111463226 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BSA71.4e-2493.55uncharacterized protein LOC111005249 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5D3C6A02.5e-2186.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E3S62.5e-2186.67uncharacterized protein LOC103500918 OS=Cucumis melo OX=3656 GN=LOC103500918 PE=... [more]
A0A6J1HI961.2e-2080.65uncharacterized protein LOC111463226 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A0A0KEZ96.3e-1777.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G11591.11.6e-1267.31unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016952.1HG10016952.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane