HG10016906 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10016906
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr03: 9196125 .. 9196442 (-)
RNA-Seq ExpressionHG10016906
SyntenyHG10016906
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTTTAGGAAGCATTTCTGGAGTCCTTCCATTGCAACCACTGAATATTTTGGATCAAGTTACCCTTCAGATAGCTGGTGTTGCAGTGCCTTATATTTGCAAGAATGCAGGGTTTGAAGCAAGCTTGGTGGCTGTGGTGGATGGTACTGTTGAGGATAAGCCCAATGGAAAAATATACCGCCTTAAGTTGAAGCTAAAGGTCAAGGTCGGCACTGCTTATGTTTTTAAGATCTTTCTGGTTGAAGTGTTTGCTCCATTCTTCGACATTCCGACGGCTGTGTCTTTCCAATATGTCGAAGATGTCGGCATCTAA

mRNA sequence

ATGGCTCTTTTAGGAAGCATTTCTGGAGTCCTTCCATTGCAACCACTGAATATTTTGGATCAAGTTACCCTTCAGATAGCTGGTGTTGCAGTGCCTTATATTTGCAAGAATGCAGGGTTTGAAGCAAGCTTGGTGGCTGTGGTGGATGGTACTGTTGAGGATAAGCCCAATGGAAAAATATACCGCCTTAAGTTGAAGCTAAAGGTCAAGGTCGGCACTGCTTATGTTTTTAAGATCTTTCTGGTTGAAGTGTTTGCTCCATTCTTCGACATTCCGACGGCTGTGTCTTTCCAATATGTCGAAGATGTCGGCATCTAA

Coding sequence (CDS)

ATGGCTCTTTTAGGAAGCATTTCTGGAGTCCTTCCATTGCAACCACTGAATATTTTGGATCAAGTTACCCTTCAGATAGCTGGTGTTGCAGTGCCTTATATTTGCAAGAATGCAGGGTTTGAAGCAAGCTTGGTGGCTGTGGTGGATGGTACTGTTGAGGATAAGCCCAATGGAAAAATATACCGCCTTAAGTTGAAGCTAAAGGTCAAGGTCGGCACTGCTTATGTTTTTAAGATCTTTCTGGTTGAAGTGTTTGCTCCATTCTTCGACATTCCGACGGCTGTGTCTTTCCAATATGTCGAAGATGTCGGCATCTAA

Protein sequence

MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKNAGFEASLVAVVDGTVEDKPNGKIYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPTAVSFQYVEDVGI
Homology
BLAST of HG10016906 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 1   MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKN-AGFEASLVAVVDGTVEDKPNGK 60
           M L  +ISG   LQ +N LD + L++    V   C+   G +A    ++DG  E  PNGK
Sbjct: 1   MTLGINISG--GLQIVNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  IYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPT-AVSFQYVEDVGI 106
            Y LKLKLKV++G AYV KI +V+ F PF  +PT  +SF+YVE++ I
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of HG10016906 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 9.0e-10
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 1   MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKNA-GFEASLVAVVDGTVEDKPNGK 60
           M L   ISG L + PL++ D     +    V   C++    +A+   ++DG +E   NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  IYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPTAVSFQYVEDVGI 106
            Y LKLK+KV++G AYV KI LV +F PF   P+ VSF+Y+E++ I
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVRLFFPFVGYPSVVSFEYLEEINI 106

BLAST of HG10016906 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0

Query: 1   MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKN-AGFEASLVAVVDGTVEDKPNGK 60
           M L  +ISG   LQ +N LD + L++    V   C+   G +A    ++DG  E  PNGK
Sbjct: 1   MTLGINISG--GLQIVNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  IYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPT-AVSFQYVEDVGI 106
            Y LKLKLKV++G AYV KI +V+ F PF  +PT  +SF+YVE++ I
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of HG10016906 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 1   MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKNA-GFEASLVAVVDGTVEDKPNGK 60
           M L   ISG L + PL++ D     +    V   C++    +A+   ++DG +E   NGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  IYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPTAVSFQYVEDVGI 106
            Y LKLK+KV++G AYV KI LV++F PF   P+ VSF+Y+E++ I
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

BLAST of HG10016906 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 1   MALLGSISGVLPLQPLNILDQVTLQIAGVAVPYICKNA-GFEASLVAVVDGTVEDKPNGK 60
           M L   I G L + PL++ D     +    V   C++    +A+    +DG++E   NGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  IYRLKLKLKVKVGTAYVFKIFLVEVFAPFFDIPTAVSFQYVEDVGI 106
            Y LKLKLKV++G AYV KI LV++F PF   P+ VSF+Y+E++ I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

BLAST of HG10016906 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 7   ISGVLPLQPLNILDQVTLQIAGVAVPYICKNA-GFEASLVAVVDGTVEDKPNGKIYRLKL 66
           I G L + P+++ D     +    V   C+     +A+    +DG++E   NGK Y  KL
Sbjct: 7   IGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 66

Query: 67  KLKVKVGTAYVFKIFLVEVFAPFFDIPTAVSFQYVE 102
           KLK+KVG AYV K  LV++F PF  +P+ VSF+Y+E
Sbjct: 67  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040704.13.1e-1044.86hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071... [more]
KAE8647454.19.0e-1040.57hypothetical protein Csa_003781 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPM41.5e-1044.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFK82.5e-1040.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KKQ89.7e-1040.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFL51.8e-0839.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10016906.1HG10016906.1mRNA