HG10016478 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10016478
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Glycerophosphodiester phosphodiesterase
Location	Chr03: 5355646 .. 5356162 (+)
RNA-Seq Expression	HG10016478
Synteny	HG10016478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGTGCTTTTGGGTCGTAGCTTCGTTGATCTTTTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAACAATGGCTCACTTTGAAAGGTGATCCCTTCTATTATTTTTAGATTTGAAATTCAAACGAAACGAAAATTATTAAATGAGACTGTCACCGTAAAATAATATGACAAAAAATTTAATGCAGGGGAAGAGCCACTAGTAATAGCAAGAGGAGGGTTATCTGGAGTGTTTCCAGAATCAAGTCCTTTTGCAAATCAAATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCCAACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGAAAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGAGTATGTTCATTTTCGTTCATTGA

mRNA sequence

ATGCTAAAGTGCTTTTGGGTCGTAGCTTCGTTGATCTTTTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAACAATGGCTCACTTTGAAAGGGGAAGAGCCACTAGTAATAGCAAGAGGAGGGTTATCTGGAGTGTTTCCAGAATCAAGTCCTTTTGCAAATCAAATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCCAACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGAAAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGAGTATGTTCATTTTCGTTCATTGA

Coding sequence (CDS)

ATGCTAAAGTGCTTTTGGGTCGTAGCTTCGTTGATCTTTTCCTCCACATTTGCACAACACAATCTCCCTCCTAAAGAACAATGGCTCACTTTGAAAGGGGAAGAGCCACTAGTAATAGCAAGAGGAGGGTTATCTGGAGTGTTTCCAGAATCAAGTCCTTTTGCAAATCAAATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCCAACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGAAAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGAGTATGTTCATTTTCGTTCATTGA

Protein sequence

MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKLLSMFIFVH

Homology

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BLAST of HG10016478 vs. NCBI nr
Match: XP_038881366.1 (glycerophosphodiester phosphodiesterase GDPDL6-like [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-57
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           MLK F V+ASLIFSSTFAQH+LPPKEQWLTLKGE PLVIARGGLSGVFPESSPFANQMAL
Sbjct: 1   MLKWFLVIASLIFSSTFAQHSLPPKEQWLTLKGEPPLVIARGGLSGVFPESSPFANQMAL 60

Query: 61  VSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVD 120
           V+GL NT LYCNLQLTKDG+GICLTDLRLQNSTNIE++FP + KSYIVNGK  KGWFSVD
Sbjct: 61  VAGLRNTALYCNLQLTKDGVGICLTDLRLQNSTNIEDVFPRQHKSYIVNGKKIKGWFSVD 120

Query: 121 YMSKDLFDKL 131
           Y+SKDLF+++
Sbjct: 121 YLSKDLFNRV 130

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BLAST of HG10016478 vs. NCBI nr
Match: XP_004143578.1 (glycerophosphodiester phosphodiesterase GDPDL6 [Cucumis sativus] >KGN48806.1 hypothetical protein Csa_002809 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-55
Identity = 107/131 (81.68%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNL PKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLRPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +V+GLHNT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP ++KSY +NGKI KGWFSV
Sbjct: 61  VVTGLHNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDAFPRDRKSYTINGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D MS DLFD++
Sbjct: 121 DIMSNDLFDRV 131

[Close]

BLAST of HG10016478 vs. NCBI nr
Match: XP_008440682.1 (PREDICTED: glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 61  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 121 DITSSDLFNRV 131

[Close]

BLAST of HG10016478 vs. NCBI nr
Match: KAA0036250.1 (glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 15  MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 74

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 75  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 134

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 135 DITSSDLFNRV 145

[Close]

BLAST of HG10016478 vs. NCBI nr
Match: TYK12644.1 (glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 61  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 121 DITSSDLFNRV 131

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BLAST of HG10016478 vs. ExPASy Swiss-Prot
Match: Q9FGT9 (Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 GN=GDPDL6 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-31
Identity = 62/132 (46.97%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 5   FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQM 64
           F+++ SL   S+ A    P      P ++WLTL G+EP V+ARGG SG+FPESS  AN +
Sbjct: 4   FFILFSLFLHSSVAAPKTPAAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSISANDL 63

Query: 65  ALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFS 124
           A+ +      + CNLQ+TKDG+G+CL+D+RL N+T I ++FP  QK+Y VNG+  KGWF 
Sbjct: 64  AIGTSSPGFTMLCNLQMTKDGVGLCLSDIRLDNATTISSVFPKAQKTYKVNGQDLKGWFV 123

Query: 125 VDYMSKDLFDKL 131
           +DY +  +F+K+
Sbjct: 124 IDYDADTIFNKV 135

[Close]

BLAST of HG10016478 vs. ExPASy Swiss-Prot
Match: Q9LVN0 (Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 24  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGIC 83
           P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+C
Sbjct: 29  PAKKWLTLNGQEPAVVARGGFSGLFPESSASANDLAIGTSSPGLTMLCNLQMTKDGVGLC 88

Query: 84  LTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL 131
           L+D+ L N+T I ++FP  QK+Y VNG+  KGWF +DY +  +F+ +
Sbjct: 89  LSDIILDNATTISSVFPKAQKTYKVNGQDLKGWFVLDYDADTIFNNV 135

[Close]

BLAST of HG10016478 vs. ExPASy Swiss-Prot
Match: Q9SZ11 (Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-28
Identity = 60/128 (46.88%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           +L C  ++  L+ +   AQ +  PK  W TL G+ PLVIARGG SG+FP+SS  A   A+
Sbjct: 10  LLLCGVILIQLLAAQIHAQ-SKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAI 69

Query: 61  VSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVD 120
           ++ + + VL+C++QLTKD +GIC  DL ++NS++IE ++P  QKSY VNG    GWF++D
Sbjct: 70  LTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTID 129

Query: 121 YMSKDLFD 129
           +  KDL D
Sbjct: 130 FSLKDLKD 136

[Close]

BLAST of HG10016478 vs. ExPASy Swiss-Prot
Match: D7SFH9 (Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-27
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 2   LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALV 61
           L C  V+  L  +   AQ +  P   W TL G+ PLVIARGG SG+FP+SS  A Q A+V
Sbjct: 20  LLCGVVLLQLFAAQVDAQRSTSP---WQTLSGDAPLVIARGGFSGLFPDSSLAAYQFAMV 79

Query: 62  SGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDY 121
             + + VL+C++QLTKDG GIC  DL L N++N E ++P  QKSY VNG   KGWF +D+
Sbjct: 80  VSVADVVLWCDVQLTKDGHGICFPDLNLANASNSEEVYPNRQKSYPVNGVTTKGWFPIDF 139

Query: 122 MSKDLFDKLLSM 134
              +L   L S+
Sbjct: 140 SLTELQKVLFSL 148

[Close]

BLAST of HG10016478 vs. ExPASy Swiss-Prot
Match: Q7Y208 (Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-26
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           +L C  V+  L  +   AQ +     +W TL G+ PLVIARGG SG++P+SS  A Q+A 
Sbjct: 18  LLFCGVVLIHLFAAQIDAQRS---TSRWQTLNGDAPLVIARGGFSGLYPDSSIAAYQLAT 77

Query: 61  VSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVD 120
           ++ + + VL+C+LQLTKDG+GIC  DL L N++ I+ ++P  +KSY VNG   KGWF  D
Sbjct: 78  LTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTKGWFPND 137

Query: 121 YMSKDLFDKLL 132
           +   +L + LL
Sbjct: 138 FSLTELQNFLL 145

[Close]

BLAST of HG10016478 vs. ExPASy TrEMBL
Match: A0A0A0KM34 (Glycerophosphodiester phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_6G501950 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 107/131 (81.68%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNL PKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLRPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +V+GLHNT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP ++KSY +NGKI KGWFSV
Sbjct: 61  VVTGLHNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDAFPRDRKSYTINGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D MS DLFD++
Sbjct: 121 DIMSNDLFDRV 131

[Close]

BLAST of HG10016478 vs. ExPASy TrEMBL
Match: A0A5D3CNJ3 (Glycerophosphodiester phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002320 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.4e-54
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 61  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 121 DITSSDLFNRV 131

[Close]

BLAST of HG10016478 vs. ExPASy TrEMBL
Match: A0A5A7SYT5 (Glycerophosphodiester phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00490 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.4e-54
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 15  MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 74

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 75  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 134

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 135 DITSSDLFNRV 145

[Close]

BLAST of HG10016478 vs. ExPASy TrEMBL
Match: A0A1S3B2A5 (Glycerophosphodiester phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103485024 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.4e-54
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MLKCFWVVASLIF-SSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMA 60
           MLKCF V+ASLIF SSTFAQHNLPPKE+WLTLKG+ PLVIARGGLSGVFPE+SPFANQMA
Sbjct: 1   MLKCFLVIASLIFISSTFAQHNLPPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMA 60

Query: 61  LVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
           +++GL NT LYCNLQLTKDGIG CLTDLRLQNSTNIE+ FP  +KSY VNGKI KGWFSV
Sbjct: 61  VITGLQNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDTFPHGRKSYNVNGKILKGWFSV 120

Query: 121 DYMSKDLFDKL 131
           D  S DLF+++
Sbjct: 121 DITSSDLFNRV 131

[Close]

BLAST of HG10016478 vs. ExPASy TrEMBL
Match: A0A6J1GEB8 (Glycerophosphodiester phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111453175 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 101/131 (77.10%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           MLKC  V+AS   SS  AQHN P K QWLTL+GEEP+VIARGGLSGVFPESSPFANQMAL
Sbjct: 1   MLKCLLVIASFFLSSASAQHNAPQKHQWLTLRGEEPIVIARGGLSGVFPESSPFANQMAL 60

Query: 61  VSGLHN-TVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSV 120
            SGLHN TVLYCNLQLTKDGIG+CLTDLRLQNSTNIE+IFP   K Y VNGKI  G FSV
Sbjct: 61  ASGLHNKTVLYCNLQLTKDGIGLCLTDLRLQNSTNIEDIFPQPHKHYNVNGKIISGLFSV 120

Query: 121 DYMSKDLFDKL 131
           D+MS+DLF+++
Sbjct: 121 DFMSEDLFNRV 131

[Close]

BLAST of HG10016478 vs. TAIR 10
Match: AT5G58050.1 (SHV3-like 4 )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 62/132 (46.97%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 5   FWVVASLIFSSTFAQHNLP------PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQM 64
           F+++ SL   S+ A    P      P ++WLTL G+EP V+ARGG SG+FPESS  AN +
Sbjct: 4   FFILFSLFLHSSVAAPKTPAAAAAVPAKKWLTLNGQEPAVVARGGFSGLFPESSISANDL 63

Query: 65  ALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFS 124
           A+ +      + CNLQ+TKDG+G+CL+D+RL N+T I ++FP  QK+Y VNG+  KGWF 
Sbjct: 64  AIGTSSPGFTMLCNLQMTKDGVGLCLSDIRLDNATTISSVFPKAQKTYKVNGQDLKGWFV 123

Query: 125 VDYMSKDLFDKL 131
           +DY +  +F+K+
Sbjct: 124 IDYDADTIFNKV 135

[Close]

BLAST of HG10016478 vs. TAIR 10
Match: AT5G58170.1 (SHV3-like 5 )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 24  PKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALVSGLHNTVLYCNLQLTKDGIGIC 83
           P ++WLTL G+EP V+ARGG SG+FPESS  AN +A+ +      + CNLQ+TKDG+G+C
Sbjct: 29  PAKKWLTLNGQEPAVVARGGFSGLFPESSASANDLAIGTSSPGLTMLCNLQMTKDGVGLC 88

Query: 84  LTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKL 131
           L+D+ L N+T I ++FP  QK+Y VNG+  KGWF +DY +  +F+ +
Sbjct: 89  LSDIILDNATTISSVFPKAQKTYKVNGQDLKGWFVLDYDADTIFNNV 135

[Close]

BLAST of HG10016478 vs. TAIR 10
Match: AT4G26690.1 (PLC-like phosphodiesterase family protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-29
Identity = 60/128 (46.88%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           +L C  ++  L+ +   AQ +  PK  W TL G+ PLVIARGG SG+FP+SS  A   A+
Sbjct: 10  LLLCGVILIQLLAAQIHAQ-SKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAI 69

Query: 61  VSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVD 120
           ++ + + VL+C++QLTKD +GIC  DL ++NS++IE ++P  QKSY VNG    GWF++D
Sbjct: 70  LTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTID 129

Query: 121 YMSKDLFD 129
           +  KDL D
Sbjct: 130 FSLKDLKD 136

[Close]

BLAST of HG10016478 vs. TAIR 10
Match: AT1G66980.1 (suppressor of npr1-1 constitutive 4 )

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 2   LKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMALV 61
           L C  V+  L  +   AQ +  P   W TL G+ PLVIARGG SG+FP+SS  A Q A+V
Sbjct: 20  LLCGVVLLQLFAAQVDAQRSTSP---WQTLSGDAPLVIARGGFSGLFPDSSLAAYQFAMV 79

Query: 62  SGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDY 121
             + + VL+C++QLTKDG GIC  DL L N++N E ++P  QKSY VNG   KGWF +D+
Sbjct: 80  VSVADVVLWCDVQLTKDGHGICFPDLNLANASNSEEVYPNRQKSYPVNGVTTKGWFPIDF 139

Query: 122 MSKDLFDKLLSM 134
              +L   L S+
Sbjct: 140 SLTELQKVLFSL 148

[Close]

BLAST of HG10016478 vs. TAIR 10
Match: AT1G66970.1 (SHV3-like 2 )

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-27
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 1   MLKCFWVVASLIFSSTFAQHNLPPKEQWLTLKGEEPLVIARGGLSGVFPESSPFANQMAL 60
           +L C  V+  L  +   AQ +     +W TL G+ PLVIARGG SG++P+SS  A Q+A 
Sbjct: 18  LLFCGVVLIHLFAAQIDAQRS---TSRWQTLNGDAPLVIARGGFSGLYPDSSIAAYQLAT 77

Query: 61  VSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVD 120
           ++ + + VL+C+LQLTKDG+GIC  DL L N++ I+ ++P  +KSY VNG   KGWF  D
Sbjct: 78  LTSVADVVLWCDLQLTKDGLGICFPDLNLANASTIDRVYPNREKSYSVNGVTTKGWFPND 137

Query: 121 YMSKDLFDKLL 132
           +   +L + LL
Sbjct: 138 FSLTELQNFLL 145

The following BLAST results are available for this feature:

BLAST of HG10016478 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881366.1	1.5e-57	84.62	glycerophosphodiester phosphodiesterase GDPDL6-like [Benincasa hispida]	[more]
XP_004143578.1	2.4e-55	81.68	glycerophosphodiester phosphodiesterase GDPDL6 [Cucumis sativus] >KGN48806.1 hyp...	[more]
XP_008440682.1	1.7e-53	80.15	PREDICTED: glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo]	[more]
KAA0036250.1	1.7e-53	80.15	glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa]	[more]
TYK12644.1	1.7e-53	80.15	glycerophosphodiester phosphodiesterase GDPDL6-like [Cucumis melo var. makuwa]	[more]

BLAST of HG10016478 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGT9	3.3e-31	46.97	Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LVN0	1.5e-28	50.47	Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SZ11	7.6e-28	46.88	Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 G...	[more]
D7SFH9	1.7e-27	47.73	Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q7Y208	7.2e-26	45.04	Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10016478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM34	1.2e-55	81.68	Glycerophosphodiester phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_6G5019...	[more]
A0A5D3CNJ3	8.4e-54	80.15	Glycerophosphodiester phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SYT5	8.4e-54	80.15	Glycerophosphodiester phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3B2A5	8.4e-54	80.15	Glycerophosphodiester phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103485024 ...	[more]
A0A6J1GEB8	3.3e-50	77.10	Glycerophosphodiester phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of HG10016478 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58050.1	2.4e-32	46.97	SHV3-like 4	[more]
AT5G58170.1	1.1e-29	50.47	SHV3-like 5	[more]
AT4G26690.1	5.4e-29	46.88	PLC-like phosphodiesterase family protein	[more]
AT1G66980.1	1.2e-28	47.73	suppressor of npr1-1 constitutive 4	[more]
AT1G66970.1	5.1e-27	45.04	SHV3-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	GENE3D	3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	coord: 34..128 e-value: 1.1E-9 score: 40.2
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	SUPERFAMILY	51695	PLC-like phosphodiesterases	coord: 35..126
None	No IPR available	PANTHER	PTHR43620	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	coord: 7..130
None	No IPR available	PANTHER	PTHR43620:SF3	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED	coord: 7..130
IPR030395	Glycerophosphodiester phosphodiesterase domain	PROSITE	PS51704	GP_PDE	coord: 36..138 score: 13.858639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10016478.1	HG10016478.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008889	glycerophosphodiester phosphodiesterase activity
molecular_function	GO:0008081	phosphoric diester hydrolase activity