HG10015612 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015612
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReplication protein A 14 kDa subunit B-like
LocationChr02: 28114632 .. 28117229 (+)
RNA-Seq ExpressionHG10015612
SyntenyHG10015612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAAGATTCGAGCAGTAGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACAGGAAAATCTACGGATGAACAAAAATTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGAATTGCTGAGGACAACAAGATCATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGGTATGTACTATAACCATTTCTTTCTGCTATCATCATTATGCCATTGATAATATCTCACTGTTACCTATGGATTTGAAAGCTCAGCAAATGCCATTTAGTCTTGACATGATCAATCTTTTCTCTTATCCCTCACGAATGTTAGATTAAATGAATTGTTTGGAATTCGGTTTTAGAATCGAAACTCTTCCTTAAAAATAGTCCTCGAGCTTTCAAAATTATCTTCACCACGACATTAGTGGCTTAGTCCTTTGCACTTCCCCCAACTTCTTTTATAGAGAGAGAACAAGGGAGTGGCAAGAAAGATTAGTCCGTTTCTCAAAGCTGAGCTCTTTGGTTCACTCCCCCAGCTTAGACTTACTTTAGACATAAAATTTAAATCTATAACTTCCTTTGAGTTCAACCATTGCGGAGGTGGTATTAAGTAGATGTTAGGAACCAAGATAGTATGGACTACTTTTGTCCCACATCGGTAAGAATGGGAGGACCAATGTGGTACTTAAGTGGCTTGACTCTCCCACCTCAATAGCTGACTTTTAGGGTGTGATTCTCCAAGGTGCTTAAGTACCTAACAATGGTATCAGAAGTGGTTGTCGTTGACGTTTCGGAGAGGAGCATTGGTGGAGAGTTATGTGACTACTGTCAGTCTAGGGATGGGATATTAGTTAGGAAACAAGGTAGGTATGGGCTAAAGTGGCTTGGCTCTCTCACCTCATTAGCTCTTTTTATTTATAATAGACATGACATTTCATCTCAAAACTAATTGATTTAAAAGTTAAGAAACTATTAAATACAAAATTGAAAGTTTAGAGATTTGTTAGACACTCTTAAAAGTTCATAGACTAAACTTATAATATACTTTGAAATTTACCTCTTTTTCAGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAAGGGTTTGTAGCTACGCCGTGAGAAGAGGCAAGAGGTATAATTTGTTATGTGATTATGAGTCTTCTATGCTTGTAACTCATGTGGCTTGTTAACTTGTTGAACTGCCGTTAATCTATTTAAAGCAACCGTGATGTTTGTTTTGGTCTCTGATGTACTAAGCTGACAACGAAGTACAAAATTTCATGGACCATGCGGTTCCAATTTCCCATCTTCCCAGTAGCCCAGGTACTTGATTCACACTTTTTTCATTTGCTGTTCAAACCACTGAATCACTAGTTTCTCTTTTAAGGAATGGTTTTTTTGTCATTATCCAATATCACTCTCAAGAACATCTTTAATCATTCTAAATTTGTTTAATCTCTAGTTTTACACCATGAGACACAATTTTTATACCAATAAAATAGATTTTTGTGATTAAAGACATATTTTGGTAGTTAAGAAGTTGCATCCTTCCAAATAAGAACTTGCTAATCCATAGTTATGCCATGAAGTTACAAAGGTTGTACTTGTAAACCAACCTCCAACAGCAAAGTAGGCATAAGGAAAGAGCAATAGACCGATCCAACCTACAAAAATGGATACGAAAAAAAAAAAAGAACTCATTGGCATCAAGCGTGAGGGAATACTAGATGTTTGATAATTTCTCCCCAAGCACGAGCGACTGTTTGCCAAAAATATAGGTTTGCGAATGACTCAGATGATGACCCACTGGACCTAGACTCGAATGGATAGAATTGTACTACTGCAATCCTTGCAAGCTTCCAAGCTGCTCTACCTCGTGATAAAGAGAAAGTGATTTTTTACATGAGAAATGTAGTTTTAATAATTTAACAATTACACTAATATACCCCTTTGTTTTTAGTTGTACATAGTCAAGTAATTTAGTTCATTTACCTAGTTAGTTCAATTTAGTTCTTGTACTTCCAAAGTGACTATTTTGTTCTCTTAATTTTTACTTTTAGTTCATTTTATTTCTAAATTTTATGATAAAATTTTATAAATAAGGACTAATAATTATTTTTTAAAAGTATACGGACTAAAATGAATAGTTTAAAAGCACAAGAATTAAATTGACTCAATTTAAAATTATAGGATTTATATTGAATGAGTTTGAAAATACATGAATCAAAATTAAATAACTTTAAATTTAAGAAAATTGATTTAACATATATTAGTATGTTACAAAGATGTCAGCTCCGAAATCGAAGGACTTAAAGCTTTTTAGAGATGGAAAGAGCTGTGTTATTTGGATGCACTAAGACAAGCTTGGTTGATTGAAATGCTAAAAATTAGTAATTTCTTTCAACATCAGTCGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCGACGGTTGA

mRNA sequence

ATGGATATGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAAGATTCGAGCAGTAGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACAGGAAAATCTACGGATGAACAAAAATTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGAATTGCTGAGGACAACAAGATCATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGTCGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCGACGGTTGA

Coding sequence (CDS)

ATGGATATGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAAGATTCGAGCAGTAGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACAGGAAAATCTACGGATGAACAAAAATTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGAATTGCTGAGGACAACAAGATCATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGTCGCTTTGGCCGAGTGGTTAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCGACGGTTGA

Protein sequence

MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNFVEVVGIAEDNKIINVEHWTDFGTTFVALAEWLRRVPAKYMGFPRESSNLSGDG
Homology
[Close]
BLAST of HG10015612 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-36
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+ GLPTVPLMNF
Sbjct: 1  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIAE NKIINVEHWTDFGTTF
Sbjct: 61 VEVVGIAEANKIINVEHWTDFGTTF 85

[Close]
BLAST of HG10015612 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 1  MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTFVA 88
          VEVVGIAE NKIINVEHWTDFGTTF A
Sbjct: 61 VEVVGIAEGNKIINVEHWTDFGTTFDA 87

[Close]
BLAST of HG10015612 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1   MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
           MD SNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 229 MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 288

Query: 61  VEVVGIAEDNKIINVEHWTDFGTTFVA 88
           VEVVGIAE NKIINVEHWTDFG TF A
Sbjct: 289 VEVVGIAEGNKIINVEHWTDFGNTFDA 315

[Close]
BLAST of HG10015612 vs. NCBI nr
Match: KAG7032018.1 (Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 11 MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 70

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIAE NKIINVEHWTDFG TF
Sbjct: 71 VEVVGIAEGNKIINVEHWTDFGNTF 95

[Close]
BLAST of HG10015612 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNF
Sbjct: 1  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIA+ NK INVEHWTDFGTTF
Sbjct: 61 VEVVGIAQSNKTINVEHWTDFGTTF 85

[Close]
BLAST of HG10015612 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD S+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+Q++ V G P  PL  +
Sbjct: 1  MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          +EV+GIAE +  I  E WT+FG +F
Sbjct: 61 LEVIGIAETDNTIRAEVWTNFGDSF 85

[Close]
BLAST of HG10015612 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD S PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  +LT+ G    P+ ++
Sbjct: 1  MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VE++GIAE N+ I  E  TDFG  F
Sbjct: 61 VEIIGIAEPNQAIRAEVCTDFGENF 85

[Close]
BLAST of HG10015612 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMN 60
          MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61 FVEVVGIAEDNKIINVEHWTDFGTTF 86
          ++EV+GIAE +  I  E WT+FG TF
Sbjct: 61 YLEVIGIAESDNAIRAETWTNFGNTF 86

[Close]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.5e-36
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNF
Sbjct: 1  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIA+ NK INVEHWTDFGTTF
Sbjct: 61 VEVVGIAQSNKTINVEHWTDFGTTF 85

[Close]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.5e-36
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNF
Sbjct: 1  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIA+ NK INVEHWTDFGTTF
Sbjct: 61 VEVVGIAQSNKTINVEHWTDFGTTF 85

[Close]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LTVHGLPTVPLMNF
Sbjct: 1  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTFVA 88
          VEVVGIAE NKIINVEHWTDFGT F A
Sbjct: 61 VEVVGIAEGNKIINVEHWTDFGTIFDA 87

[Close]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVNGELLSMH GRKIRAVVQVIQSDGGIVTGKSTDEQ+LT+HGLPTVP MNF
Sbjct: 1  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          VEVVGIAE NK I VE WTDFGTTF
Sbjct: 61 VEVVGIAESNKTIKVEDWTDFGTTF 85

[Close]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD SNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LTVHGLP VPLMNF
Sbjct: 1  MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTFVA 88
          VEV+GIAE NKIINVEH TDFG TF A
Sbjct: 61 VEVIGIAESNKIINVEHSTDFGNTFDA 87

[Close]
BLAST of HG10015612 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHGLPTVPLMNF 60
          MD S+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+Q++ V G P  PL  +
Sbjct: 1  MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61 VEVVGIAEDNKIINVEHWTDFGTTF 86
          +EV+GIAE +  I  E WT+FG +F
Sbjct: 61 LEVIGIAETDNTIRAEVWTNFGDSF 85

[Close]
BLAST of HG10015612 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-18
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMN 60
          MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61 FVEVVGIAEDNKIINVEHWTDFGTTF 86
          ++EV+GIAE +  I  E WT+FG TF
Sbjct: 61 YLEVIGIAESDNAIRAETWTNFGNTF 86

[Close]
BLAST of HG10015612 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-18
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1  MDMSNPAVFVNGELLSMHRGRKIRAVVQVIQSDGGIVTGKSTDEQKLTVHG-LPTVPLMN 60
          MD S+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ ++ V G  P  PL  
Sbjct: 1  MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61 FVEVVGIAEDNKIINVEHWTDFGTTF 86
          ++EV+GIAE +  I  E WT+FG TF
Sbjct: 61 YLEVIGIAESDNAIRAETWTNFGNTF 86

The following BLAST results are available for this feature:
BLAST of HG10015612 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893019.13.5e-3692.94replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_023539791.16.0e-3689.66replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
KAG6601223.17.9e-3689.66Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... [more]
KAG7032018.11.0e-3590.59Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosper... [more]
XP_008446755.11.3e-3590.59PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
BLAST of HG10015612 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG71.7e-2055.29Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9SDK92.6e-1849.41Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q9LXK11.1e-1650.00Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
BLAST of HG10015612 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGM86.5e-3690.59replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU426.5e-3690.59Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1JC993.2e-3588.51replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A0A0KRF21.6e-3489.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A6J1D9X11.3e-3181.61replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of HG10015612 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.11.2e-2155.29Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.17.9e-1850.00Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.27.9e-1850.00Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 3..85
e-value: 5.5E-14
score: 52.4
NoneNo IPR availableGENE3D2.40.50.140coord: 2..91
e-value: 8.8E-13
score: 50.0
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 1..87
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..87
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10015612.1HG10015612.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding