HG10014973 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014973
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	Chr02: 22505694 .. 22507243 (+)
RNA-Seq Expression	HG10014973
Synteny	HG10014973

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATGATCACCAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACCACCTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGATATCACTTCGAGAAGTTTGGTGACATTCTGGAGGCGGTTATCATTTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTCGTAAGTGATTGATTCGATTGACGGCGTTAGGTTAGGGATTTCGTTTTTACTTGATTGATTGATTGATTGATTGTGAGTTTTTTTTTATTTATTTTCAGGTTACATTCAAGGACGCGGAATCGGCCAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCCCAAGGTCCTCAACCAGGTTTAACTTCCTCTTCCTCTTCTCTTCTCTCTGTGCATGATTTGGCAATGGCATTTGAAGAAATTAGACGGTGGAGATCTGAATTTGTTTTGTGATCTTTTGAAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCCACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGGTATACCTTAAGATCCCATGTCCTCTTCCCTATTCTAATATTGCCCATTTTAATGGACCTTTATTTTATTTATTTATTTGGGTTTTTTTTTTCCCTTTTAAATTAACGCAAATTTCATTTTCTTTTAGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACGTAAGCTATCCCTTTATTCCTTTATTTTTCTTTTAATTTTTTTAGCTTATGTTAAATTAATAAAACATAATTCAATTTTTTAGTTTTAACATTATGCATGGAATTGGGTAGAATGATATTATTAAATCACCGATTGACCTAAAAGCTTAAGCTGATAGGTGAAGGATAAATTTAATATCATATCTTAACACTCCCCCTCACTTGCGGGCTTGAAATATGAAGAAGAGCCAAGCAAGTGAAAATAGATATTAATTGGGGAGAAACGACAACGCAAGGGCTTGAACACAGGACATCCTGGACCACCCGCTCTGATACCATGTTAAATCACCGATTGACCTAAAAGCTTAAGCTGATAGGTGAAGGATAAATTTAATATCATATCTTAACAGATATATATAGTAAAAACTTCGACGTTTTTTGTGATGAACAGAAGCTGGGGTATATGAACGGGCATTACACGCAGATGTATCCAGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACGTCGGCGGGCCCATTCGCCGCAGTCCCACCTACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTCCATTTTACTGTAACTCATCAACTTAA

mRNA sequence

ATGACCATGATCACCAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACCACCTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGATATCACTTCGAGAAGTTTGGTGACATTCTGGAGGCGGTTATCATTTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTCGTTACATTCAAGGACGCGGAATCGGCCAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCCCAAGGTCCTCAACCAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCCACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACAAGCTGGGGTATATGAACGGGCATTACACGCAGATGTATCCAGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACGTCGGCGGGCCCATTCGCCGCAGTCCCACCTACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTCCATTTTACTGTAACTCATCAACTTAA

Coding sequence (CDS)

ATGACCATGATCACCAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACCACCTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGATATCACTTCGAGAAGTTTGGTGACATTCTGGAGGCGGTTATCATTTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTCGTTACATTCAAGGACGCGGAATCGGCCAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCCCAAGGTCCTCAACCAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCCACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACAAGCTGGGGTATATGAACGGGCATTACACGCAGATGTATCCAGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACGTCGGCGGGCCCATTCGCCGCAGTCCCACCTACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTCCATTTTACTGTAACTCATCAACTTAA

Protein sequence

MTMITSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPPTSIMSKPASVGPNPGPFYCNSST

Homology

[Close]

BLAST of HG10014973 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida])

HSP 1 Score: 489.2 bits (1258), Expect = 2.2e-134
Identity = 241/255 (94.51%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 1   MTMITSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGR 60
           M+  T++N NNAGLFGDTTLTKVFVGGLAWETPKEAMR HFEKFG+ILEAVIISDKLTGR
Sbjct: 4   MSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGR 63

Query: 61  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGS 120
           SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQPGS
Sbjct: 64  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS 123

Query: 121 NGGGPRTTS-PAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK 180
           NGGGPRTTS  A PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK
Sbjct: 124 NGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK 183

Query: 181 LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPP 240
           LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAAVPP
Sbjct: 184 LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPP 243

Query: 241 TSIMSKPASVGPNPG 255
           +SIMSKPASVGPNPG
Sbjct: 244 SSIMSKPASVGPNPG 258

[Close]

BLAST of HG10014973 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 487.3 bits (1253), Expect = 8.5e-134
Identity = 240/254 (94.49%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MTMITSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGR 60
           M+  T++N NNAGLFGDTTLTKVFVGGLAWETPKEAMR HFEKFG+ILEAVIISDKLTGR
Sbjct: 4   MSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGR 63

Query: 61  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGS 120
           SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQPGS
Sbjct: 64  SKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGS 123

Query: 121 NGGGPRTTS-PAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK 180
           NGGGPRTTS  A PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK
Sbjct: 124 NGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHK 183

Query: 181 LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPP 240
           LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAAVPP
Sbjct: 184 LGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPP 243

Query: 241 TSIMSKPASVGPNP 254
           +SIMSKPASVGPNP
Sbjct: 244 SSIMSKPASVGPNP 257

[Close]

BLAST of HG10014973 vs. NCBI nr
Match: KAA0034049.1 (putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 483.0 bits (1242), Expect = 1.6e-132
Identity = 240/261 (91.95%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MTMI--TSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLT 60
           MTM+  T+N+  NAGLFGDTTLTKVFVGGLAWETPKEAMR HF+KFG+ILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPGPFY 258
           VPPTSIMSKP +VGPNPGPF+
Sbjct: 241 VPPTSIMSKPTTVGPNPGPFF 261

[Close]

BLAST of HG10014973 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 481.9 bits (1239), Expect = 3.6e-132
Identity = 240/260 (92.31%), Postives = 247/260 (95.00%), Query Frame = 0


Query: 1   MTMIT-----SNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISD 60
           MTM+T     +N++ NAGLFGDTTLTKVFVGGLAWETPKEAMR HF KFG+ILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASVGPNPG 255
           AAVPPTSIMSKP +VGPNPG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPG 260

[Close]

BLAST of HG10014973 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 239/259 (92.28%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 1   MTMIT-----SNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISD 60
           MTM+T     +N++ NAGLFGDTTLTKVFVGGLAWETPKEAMR HF KFG+ILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASVGPNP 254
           AAVPPTSIMSKP +VGPNP
Sbjct: 241 AAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of HG10014973 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.0e-57
Identity = 140/264 (53.03%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 3   MITSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSK 62
           M TSNN N  G FGDT LTKVFVGGLAW+T KEAM  HF K+GDILEAVIISDKLT RSK
Sbjct: 1   MTTSNNVN--GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSK 60

Query: 63  GYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNG 122
           GYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG R   S + + +P QGP+ G+  
Sbjct: 61  GYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMT-SPQQGPKNGNR- 120

Query: 123 GGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG- 182
                 +P   GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G 
Sbjct: 121 -----ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGY 180

Query: 183 ----YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMG 242
               YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G
Sbjct: 181 VGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIG 240

[Close]

BLAST of HG10014973 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  DTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAK 76
           DTT TK+FVGGL + T   ++R +FE FGDI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  KACEDSAPIINGRRANCNLASLGAR 102
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of HG10014973 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  DTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAK 76
           DTT TK+FVGGL + T   ++R +FE FGDI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  KACEDSAPIINGRRANCNLASLGAR 102
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of HG10014973 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  DTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAK 76
           DTT TK+FVGGL + T   ++R +FE FGDI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  KACEDSAPIINGRRANCNLASLGAR 102
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of HG10014973 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  DTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAK 76
           DTT TK+FVGGL + T   ++R +FE FGDI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  KACEDSAPIINGRRANCNLASLGAR 102
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of HG10014973 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.8e-133
Identity = 240/261 (91.95%), Postives = 250/261 (95.79%), Query Frame = 0


Query: 1   MTMI--TSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLT 60
           MTM+  T+N+  NAGLFGDTTLTKVFVGGLAWETPKEAMR HF+KFG+ILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPGPFY 258
           VPPTSIMSKP +VGPNPGPF+
Sbjct: 241 VPPTSIMSKPTTVGPNPGPFF 261

[Close]

BLAST of HG10014973 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.7e-132
Identity = 240/260 (92.31%), Postives = 247/260 (95.00%), Query Frame = 0


Query: 1   MTMIT-----SNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISD 60
           MTM+T     +N++ NAGLFGDTTLTKVFVGGLAWETPKEAMR HF KFG+ILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASVGPNPG 255
           AAVPPTSIMSKP +VGPNPG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPG 260

[Close]

BLAST of HG10014973 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.9e-131
Identity = 239/258 (92.64%), Postives = 248/258 (96.12%), Query Frame = 0


Query: 1   MTMI--TSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLT 60
           MTM+  T+N+  NAGLFGDTTLTKVFVGGLAWETPKEAMR HF+KFG+ILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPG 255
           VPPTSIMSKP +VGPNPG
Sbjct: 241 VPPTSIMSKPTTVGPNPG 258

[Close]

BLAST of HG10014973 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.3e-131
Identity = 238/257 (92.61%), Postives = 247/257 (96.11%), Query Frame = 0


Query: 1   MTMI--TSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLT 60
           MTM+  T+N+  NAGLFGDTTLTKVFVGGLAWETPKEAMR HF+KFG+ILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNP 254
           VPPTSIMSKP +VGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

[Close]

BLAST of HG10014973 vs. ExPASy TrEMBL
Match: A0A6J1CCJ5 (probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.0e-120
Identity = 223/252 (88.49%), Postives = 234/252 (92.86%), Query Frame = 0


Query: 6   SNNTNNAGL-FGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGY 65
           SNN+NNAGL FGDTTLTKVFVGGLAWETPKEAMR HFEKFG+ILEAVIISDKLTGRSKGY
Sbjct: 2   SNNSNNAGLMFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGY 61

Query: 66  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ-PGSNGG 125
           GFVTFKDAESAKKACED+APIINGRRANCNLASLGARRG   +++ATPPQ P  PGSNGG
Sbjct: 62  GFVTFKDAESAKKACEDAAPIINGRRANCNLASLGARRGSRSASAATPPQAPPLPGSNGG 121

Query: 126 GPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYM 185
           G   ++ AA  NHVQWYYPAGT PTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKL YM
Sbjct: 122 GGARSTSAASPNHVQWYYPAGTPPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLSYM 181

Query: 186 N--GHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPPTS 245
           N  GHY+Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT+AGPFAAVPPTS
Sbjct: 182 NGGGHYSQVYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTS 241

Query: 246 IMSKPASVGPNP 254
           IMSKPASVGPNP
Sbjct: 242 IMSKPASVGPNP 253

[Close]

BLAST of HG10014973 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-58
Identity = 140/264 (53.03%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 3   MITSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSK 62
           M TSNN N  G FGDT LTKVFVGGLAW+T KEAM  HF K+GDILEAVIISDKLT RSK
Sbjct: 1   MTTSNNVN--GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSK 60

Query: 63  GYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNG 122
           GYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG R   S + + +P QGP+ G+  
Sbjct: 61  GYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMT-SPQQGPKNGNR- 120

Query: 123 GGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG- 182
                 +P   GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G 
Sbjct: 121 -----ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGY 180

Query: 183 ----YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMG 242
               YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G
Sbjct: 181 VGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIG 240

[Close]

BLAST of HG10014973 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 172.2 bits (435), Expect = 5.6e-43
Identity = 110/227 (48.46%), Postives = 132/227 (58.15%), Query Frame = 0


Query: 40  HFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLG 99
           HF K+GDILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLASLG
Sbjct: 4   HFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLG 63

Query: 100 ARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVP 159
            R        ATPP                    GNH QWYYP+G        Q HQ VP
Sbjct: 64  GRLRPKNGNRATPPH------------------VGNHSQWYYPSGFTNQQHQQQNHQAVP 123

Query: 160 FYGYSPSPTYIATDISYNHKLG-----YMNGHYTQMYP------------------GQAM 219
           FYGY PS  Y+A ++++N K+G     YMNG+Y QM P                  G+ M
Sbjct: 124 FYGY-PS-AYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVM 183

Query: 220 VG-ANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFA-AVPPTS 242
           VG A+ ++P Y +Y YHQS A+G       P P+ + P + + PP S
Sbjct: 184 VGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLSFSTPPIS 204

[Close]

BLAST of HG10014973 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-37
Identity = 105/245 (42.86%), Postives = 135/245 (55.10%), Query Frame = 0


Query: 16  GDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESA 75
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 76  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 135
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 136 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 195
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 196 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPPTSIMSKP 252
                 G     A +  P YP    H       P   F    +S  P    PPT  M + 
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQV 240

[Close]

BLAST of HG10014973 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-37
Identity = 103/239 (43.10%), Postives = 133/239 (55.65%), Query Frame = 0


Query: 16  GDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESA 75
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 76  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 135
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 136 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 195
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 196 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPPTSIMSK 246
                 G     A +  P YP    H       P   F    +S  P    PPT  M +
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQ 234

[Close]

BLAST of HG10014973 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-36
Identity = 105/249 (42.17%), Postives = 136/249 (54.62%), Query Frame = 0


Query: 16  GDTTLTKVFVGGLAWETPKEAMRYHFEKFGDILEAVIISDKLTGRSKGYGFVTFKDAESA 75
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 76  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 135
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 136 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 195
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 196 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTSAGPFAAVPPTSIMSKP 255
                 G     A +  P YP    H       P   F    +S  P    PPT  M + 
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQG 244

The following BLAST results are available for this feature:

BLAST of HG10014973 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891949.1	2.2e-134	94.51	probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]	[more]
XP_038891950.1	8.5e-134	94.49	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]
KAA0034049.1	1.6e-132	91.95	putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_004143608.1	3.6e-132	92.31	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_011654915.1	1.4e-131	92.28	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]

BLAST of HG10014973 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	3.0e-57	53.03	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	1.4e-22	58.82	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	1.8e-22	58.82	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	1.8e-22	58.82	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	1.8e-22	58.82	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of HG10014973 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY01	7.8e-133	91.95	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0KNL6	1.7e-132	92.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BEI0	1.9e-131	92.64	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3BD62	7.3e-131	92.61	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1CCJ5	2.0e-120	88.49	probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248...	[more]

BLAST of HG10014973 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	2.1e-58	53.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	5.6e-43	48.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	7.9e-37	42.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	7.9e-37	43.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	3.9e-36	42.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 22..94 e-value: 2.4E-22 score: 90.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..80 e-value: 7.2E-17 score: 61.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..98 score: 16.755964
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..101 e-value: 1.5E-23 score: 84.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..138
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 8..249
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 8..249
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 21..96 e-value: 4.67704E-42 score: 136.591
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014973.1	HG10014973.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding