HG10014950 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014950
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMalectin_like domain-containing protein
LocationChr02: 22168407 .. 22168655 (+)
RNA-Seq ExpressionHG10014950
SyntenyHG10014950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACGATTACTACTAGCATTCAGAAATGTACGGTGGTTACTCTATTTCCGGTTGATGTTAAGGCGTCGACGGCAAACGTGACGCTTACTGCTACAAATTCCTCCGCCGGCTTCCCGCCGTTTATCAATGCAATGGAGGTTTTCACCAAAGTTATCGTCACCGGCGACGGCGGACCATCGGTGCACTTTACTTTCCTGTCCTCTGTTTTGATGTTTTGCGTCTTTGTTTTGGTTAATTTACTGTGA

mRNA sequence

ATGTCCACGATTACTACTAGCATTCAGAAATGTACGGTGGTTACTCTATTTCCGGTTGATGTTAAGGCGTCGACGGCAAACGTGACGCTTACTGCTACAAATTCCTCCGCCGGCTTCCCGCCGTTTATCAATGCAATGGAGGTTTTCACCAAAGTTATCGTCACCGGCGACGGCGGACCATCGGTGCACTTTACTTTCCTGTCCTCTGTTTTGATGTTTTGCGTCTTTGTTTTGGTTAATTTACTGTGA

Coding sequence (CDS)

ATGTCCACGATTACTACTAGCATTCAGAAATGTACGGTGGTTACTCTATTTCCGGTTGATGTTAAGGCGTCGACGGCAAACGTGACGCTTACTGCTACAAATTCCTCCGCCGGCTTCCCGCCGTTTATCAATGCAATGGAGGTTTTCACCAAAGTTATCGTCACCGGCGACGGCGGACCATCGGTGCACTTTACTTTCCTGTCCTCTGTTTTGATGTTTTGCGTCTTTGTTTTGGTTAATTTACTGTGA

Protein sequence

MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVTGDGGPSVHFTFLSSVLMFCVFVLVNLL
Homology
BLAST of HG10014950 vs. NCBI nr
Match: XP_038892896.1 (uncharacterized protein At1g24485-like [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 5.5e-23
Identity = 66/81 (81.48%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVTGDGGP 60
           MSTITTSI KCTVVTLFPV V AST NV L A NSSAGFPP I+AMEVFTKVI TG GGP
Sbjct: 321 MSTITTSIHKCTVVTLFPVAVNASTVNVMLAAANSSAGFPPLISAMEVFTKVIATG-GGP 380

Query: 61  SVHFTFLSSVLMFCVFVLVNL 82
           S+HFTFLSSVLM CV VL NL
Sbjct: 381 SMHFTFLSSVLMLCVSVLANL 400

BLAST of HG10014950 vs. NCBI nr
Match: XP_011656171.1 (leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----G 60
           MSTITT++ KCTVVTLFPVDV+ STA VTL A NSSA  PP I+AMEVFTKVI T    G
Sbjct: 165 MSTITTTVLKCTVVTLFPVDVRGSTAKVTLAAANSSANLPPLISAMEVFTKVIATGGVAG 224

Query: 61  DGGPSVHFTFLSSVLMFCVFVLVNLL 83
             GPS  FTFLSS+LM CV VLVNLL
Sbjct: 225 SNGPS-QFTFLSSILMICVSVLVNLL 249

BLAST of HG10014950 vs. NCBI nr
Match: KAA0062206.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-19
Identity = 63/92 (68.48%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKV-------- 60
           MSTITTSI KCTVVTLFPV VKASTANVTL A NSS  FPP I AMEVFTKV        
Sbjct: 91  MSTITTSIHKCTVVTLFPVHVKASTANVTLAAANSSVPFPPLITAMEVFTKVNATNVTGD 150

Query: 61  ---IVTGDGGPSVHFTFLSSVLMFCVFVLVNL 82
              IV GD  PS+ FTFLS VL+ CV VL NL
Sbjct: 151 NIDIVAGDSTPSMRFTFLSFVLILCVSVLANL 182

BLAST of HG10014950 vs. NCBI nr
Match: KAA0062208.1 (leucine-rich repeat receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 60/86 (69.77%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----G 60
           MSTITT+++ CTVVTLFPVD+K S ANVTL A NS    PP I+AMEVFTKVI T    G
Sbjct: 177 MSTITTTVRNCTVVTLFPVDIKGSRANVTLAAANSPTNLPPLISAMEVFTKVIATGGVAG 236

Query: 61  DGGPSVHFTFLSSVLMFCVFVLVNLL 83
             GPS  FTFLSSVLM CV VLVNLL
Sbjct: 237 SNGPS-QFTFLSSVLMICVSVLVNLL 261

BLAST of HG10014950 vs. NCBI nr
Match: KGN49999.2 (hypothetical protein Csa_000485 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----- 60
           MSTITTS+ KCTVVTLFPV VKASTANVTL A NSS G PP I AMEVF KV  T     
Sbjct: 689 MSTITTSLHKCTVVTLFPVHVKASTANVTLAAANSSVGLPPLITAMEVFAKVNATNVTDD 748

Query: 61  ---GDGGPSVHFTFLSSVLMFCVFVLVNLL 83
              GDG  S+ F+ LS V+M CV VL NL+
Sbjct: 749 SIAGDGRASMQFSLLSFVMMLCVSVLANLM 778

BLAST of HG10014950 vs. ExPASy TrEMBL
Match: A0A0A0KS42 (Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G177650 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----G 60
           MSTITT++ KCTVVTLFPVDV+ STA VTL A NSSA  PP I+AMEVFTKVI T    G
Sbjct: 178 MSTITTTVLKCTVVTLFPVDVRGSTAKVTLAAANSSANLPPLISAMEVFTKVIATGGVAG 237

Query: 61  DGGPSVHFTFLSSVLMFCVFVLVNLL 83
             GPS  FTFLSS+LM CV VLVNLL
Sbjct: 238 SNGPS-QFTFLSSILMICVSVLVNLL 262

BLAST of HG10014950 vs. ExPASy TrEMBL
Match: A0A5A7V701 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00010 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 63/92 (68.48%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKV-------- 60
           MSTITTSI KCTVVTLFPV VKASTANVTL A NSS  FPP I AMEVFTKV        
Sbjct: 91  MSTITTSIHKCTVVTLFPVHVKASTANVTLAAANSSVPFPPLITAMEVFTKVNATNVTGD 150

Query: 61  ---IVTGDGGPSVHFTFLSSVLMFCVFVLVNL 82
              IV GD  PS+ FTFLS VL+ CV VL NL
Sbjct: 151 NIDIVAGDSTPSMRFTFLSFVLILCVSVLANL 182

BLAST of HG10014950 vs. ExPASy TrEMBL
Match: A0A5A7V3N2 (Leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00030 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.9e-19
Identity = 60/86 (69.77%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----G 60
           MSTITT+++ CTVVTLFPVD+K S ANVTL A NS    PP I+AMEVFTKVI T    G
Sbjct: 177 MSTITTTVRNCTVVTLFPVDIKGSRANVTLAAANSPTNLPPLISAMEVFTKVIATGGVAG 236

Query: 61  DGGPSVHFTFLSSVLMFCVFVLVNLL 83
             GPS  FTFLSSVLM CV VLVNLL
Sbjct: 237 SNGPS-QFTFLSSVLMICVSVLVNLL 261

BLAST of HG10014950 vs. ExPASy TrEMBL
Match: A0A0A0KLJ1 (Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G177640 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVT----- 60
           MSTITTS+ KCTVVTLFPV VKASTANVTL A NSS G PP I AMEVF KV  T     
Sbjct: 123 MSTITTSLHKCTVVTLFPVHVKASTANVTLAAANSSVGLPPLITAMEVFAKVNATNVTDD 182

Query: 61  ---GDGGPSVHFTFLSSVLMFCVFVLVNLL 83
              GDG  S+ F+ LS V+M CV VL NL+
Sbjct: 183 SIAGDGRASMQFSLLSFVMMLCVSVLANLM 212

BLAST of HG10014950 vs. ExPASy TrEMBL
Match: A0A6J1CDC0 (receptor-like protein kinase At5g59670 OS=Momordica charantia OX=3673 GN=LOC111010171 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-14
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 1   MSTITTSIQKCTVVTLFPVDVKASTANVTLTATNSSAGFPPFINAMEVFTKVIVTG--DG 60
           +STITTS+ KCTVVTL+PVDV+ S  NV+L A NSS G PP I+AMEVFTKVI  G    
Sbjct: 310 VSTITTSVSKCTVVTLYPVDVRKSMVNVSLVAANSS-GLPPLISAMEVFTKVIPIGGAGA 369

Query: 61  GPSVHFTFLSSVLMFCVFVLVNLL 83
           GP+V FT LS VLM    VL NLL
Sbjct: 370 GPAVQFTLLSFVLMLSGCVLANLL 392

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038892896.15.5e-2381.48uncharacterized protein At1g24485-like [Benincasa hispida][more]
XP_011656171.12.2e-1972.09leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 [Cuc... [more]
KAA0062206.13.7e-1968.48putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... [more]
KAA0062208.11.8e-1869.77leucine-rich repeat receptor-like serine/threonine-protein kinase [Cucumis melo ... [more]
KGN49999.24.5e-1764.44hypothetical protein Csa_000485 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KS421.1e-1972.09Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G1776... [more]
A0A5A7V7011.8e-1968.48Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... [more]
A0A5A7V3N28.9e-1969.77Leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Cucumis mel... [more]
A0A0A0KLJ12.2e-1764.44Malectin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G1776... [more]
A0A6J1CDC03.0e-1464.29receptor-like protein kinase At5g59670 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014950.1HG10014950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane