HG10014341 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10014341
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
LocationChr02: 9729418 .. 9729807 (+)
RNA-Seq ExpressionHG10014341
SyntenyHG10014341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCCTAAAGATCAAAAGGGGTGGGGGTATACCTTTGGCTGAAATCCTTGTGGTCCGTGAAGGTCTTCGTTTTGCTAGCAATTTTCCTAATATGAACCTTATGGTTGAATCAGATAGTAAGCAAACGATCGATCTAATTCACGATGATGATATCTGGGCGAGTAGTGCTGATTGCTGGCTTGAAGATATAAAGAGGCTGTCATTGTCCTTTAATTCGGTGATTTTTTGTTTTTGCCATAGAAGTTGTAATGTTGTAGCGGACCACATTGCCAAAAATGCAAAATCTTGTTATCTTAATGTTGATTGGCTGGTCGATTATCCCACGTGGATAATTTATCAAGTCCAAAACGACTTGTCTTCAAATTTGGCCCTTGAGGCGCTCTAA

mRNA sequence

ATGGCTTTCCTAAAGATCAAAAGGGGTGGGGGTATACCTTTGGCTGAAATCCTTGTGGTCCGTGAAGGTCTTCGTTTTGCTAGCAATTTTCCTAATATGAACCTTATGGTTGAATCAGATAGTAAGCAAACGATCGATCTAATTCACGATGATGATATCTGGGCGAGTAGTGCTGATTGCTGGCTTGAAGATATAAAGAGGCTGTCATTGTCCTTTAATTCGGTGATTTTTTGTTTTTGCCATAGAAGTTGTAATGTTGTAGCGGACCACATTGCCAAAAATGCAAAATCTTGTTATCTTAATGTTGATTGGCTGGTCGATTATCCCACGTGGATAATTTATCAAGTCCAAAACGACTTGTCTTCAAATTTGGCCCTTGAGGCGCTCTAA

Coding sequence (CDS)

ATGGCTTTCCTAAAGATCAAAAGGGGTGGGGGTATACCTTTGGCTGAAATCCTTGTGGTCCGTGAAGGTCTTCGTTTTGCTAGCAATTTTCCTAATATGAACCTTATGGTTGAATCAGATAGTAAGCAAACGATCGATCTAATTCACGATGATGATATCTGGGCGAGTAGTGCTGATTGCTGGCTTGAAGATATAAAGAGGCTGTCATTGTCCTTTAATTCGGTGATTTTTTGTTTTTGCCATAGAAGTTGTAATGTTGTAGCGGACCACATTGCCAAAAATGCAAAATCTTGTTATCTTAATGTTGATTGGCTGGTCGATTATCCCACGTGGATAATTTATCAAGTCCAAAACGACTTGTCTTCAAATTTGGCCCTTGAGGCGCTCTAA

Protein sequence

MAFLKIKRGGGIPLAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSNLALEAL
Homology
BLAST of HG10014341 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-09
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 0

Query: 14  LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFN 73
           LA+IL +REGL  A+      ++VE+DS + ++LI D   W   A  W+EDI+  +  F 
Sbjct: 116 LAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQ 175

Query: 74  SVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSNLALEA 129
            + F    R  N VA H+ +   S      W +D+P W+    +    +++AL A
Sbjct: 176 EICFQHVFRESNAVAYHLGRETISLRCGFLWRLDFPIWLGRLAEAGKQNSVALMA 230

BLAST of HG10014341 vs. NCBI nr
Match: XP_027103277.1 (uncharacterized protein LOC113724589 [Coffea arabica])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 11   GIP-LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLS 70
            G+P + E   +R+ L F  +   MN++++SD +  ID I +  +    A   L DIK LS
Sbjct: 1177 GVPAVEEATAIRQALMFVQSNGWMNIIIQSDCRGIIDQIREGSLNDHLAGAVLFDIKVLS 1236

Query: 71   LSFNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSS 123
              F S IF F  R  N VA H+AK A +    + W+  +P W+    +ND+ +
Sbjct: 1237 KGFGSCIFSFIKREGNCVAHHLAKFALNLVSEIAWVDSFPVWLSNLAKNDVGA 1289

BLAST of HG10014341 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 14   LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFN 73
            LAEI  + EGL+FA+     +L VESDS   I LI ++         W+ +I+ L+  F 
Sbjct: 1344 LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFA 1403

Query: 74   SVIFCFCHRSCNVVADHIAK-NAKSCYLNVDWLVDYPTWIIYQVQNDLSSNLA 126
             + F    R CN  A  +AK    S      WL ++PTW++  VQ D  SN A
Sbjct: 1404 FISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFA 1456

BLAST of HG10014341 vs. NCBI nr
Match: VAH20608.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-07
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 0

Query: 15  AEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFNS 74
           AE++ +R GL  A      +L++ESDS   +D+I+ +D        ++E  + L   F  
Sbjct: 55  AEVVAIRNGLILAMTIGCNSLILESDSSNAVDIINQEDYLGQEVSIYME-CRHLGSDFAK 114

Query: 75  VIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLS 122
           V    C R  N VAD IAKNA S   ++ W    P +I  Q+ NDL+
Sbjct: 115 VEVIHCFREANSVADSIAKNALSTRSSMVWDEGVPDFISLQIVNDLA 160

BLAST of HG10014341 vs. NCBI nr
Match: XP_027101192.1 (uncharacterized protein LOC113720678 [Coffea arabica] >XP_027115614.1 uncharacterized protein LOC113733445 [Coffea arabica])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 0

Query: 14  LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIH--DDDIWASSADCWLEDIKRLSLS 73
           + E L +R  +  A       +  ESD K  ID I+  +DD+  ++    L DIKRL LS
Sbjct: 344 MEEALALRAAMLVAKQQGWRRVEFESDCKYVIDRINSEEDDVEIATV---LSDIKRLKLS 403

Query: 74  FNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSN 124
           F    F F  R  N V+ HIAK A +     +W  D+P W++  VQ D  S+
Sbjct: 404 FYECCFSFTRRESNSVSHHIAKFAINLEKTAEWKFDFPAWLLDLVQADCRSS 452

BLAST of HG10014341 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 0

Query: 14  LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFN 73
           LA+IL +REGL  A+      ++VE+DS + ++LI D   W   A  W+EDI+  +  F 
Sbjct: 116 LAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQ 175

Query: 74  SVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSNLALEA 129
            + F    R  N VA H+ +   S      W +D+P W+    +    +++AL A
Sbjct: 176 EICFQHVFRESNAVAYHLGRETISLRCGFLWRLDFPIWLGRLAEAGKQNSVALMA 230

BLAST of HG10014341 vs. ExPASy TrEMBL
Match: A0A6P6VMX3 (uncharacterized protein LOC113724589 OS=Coffea arabica OX=13443 GN=LOC113724589 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 11   GIP-LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLS 70
            G+P + E   +R+ L F  +   MN++++SD +  ID I +  +    A   L DIK LS
Sbjct: 1177 GVPAVEEATAIRQALMFVQSNGWMNIIIQSDCRGIIDQIREGSLNDHLAGAVLFDIKVLS 1236

Query: 71   LSFNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSS 123
              F S IF F  R  N VA H+AK A +    + W+  +P W+    +ND+ +
Sbjct: 1237 KGFGSCIFSFIKREGNCVAHHLAKFALNLVSEIAWVDSFPVWLSNLAKNDVGA 1289

BLAST of HG10014341 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 14   LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFN 73
            LAEI  + EGL+FA+     +L VESDS   I LI ++         W+ +I+ L+  F 
Sbjct: 1344 LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFA 1403

Query: 74   SVIFCFCHRSCNVVADHIAK-NAKSCYLNVDWLVDYPTWIIYQVQNDLSSNLA 126
             + F    R CN  A  +AK    S      WL ++PTW++  VQ D  SN A
Sbjct: 1404 FISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFA 1456

BLAST of HG10014341 vs. ExPASy TrEMBL
Match: A0A6P6VGX4 (uncharacterized protein LOC113720678 OS=Coffea arabica OX=13443 GN=LOC113720678 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 0

Query: 14  LAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIH--DDDIWASSADCWLEDIKRLSLS 73
           + E L +R  +  A       +  ESD K  ID I+  +DD+  ++    L DIKRL LS
Sbjct: 344 MEEALALRAAMLVAKQQGWRRVEFESDCKYVIDRINSEEDDVEIATV---LSDIKRLKLS 403

Query: 74  FNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSN 124
           F    F F  R  N V+ HIAK A +     +W  D+P W++  VQ D  S+
Sbjct: 404 FYECCFSFTRRESNSVSHHIAKFAINLEKTAEWKFDFPAWLLDLVQADCRSS 452

BLAST of HG10014341 vs. ExPASy TrEMBL
Match: A0A6P6T067 (uncharacterized protein LOC113696490 OS=Coffea arabica OX=13443 GN=LOC113696490 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/117 (28.21%), Postives = 53/117 (45.30%), Query Frame = 0

Query: 7    KRGGGIPLAEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIK 66
            ++ G     E L +R  L  A       + V+SD +  +  I+  ++        LEDI+
Sbjct: 1045 RKKGEAATEESLAIRSALEMAQAAGWTKIEVQSDCRNVVSSINAGNVQDCKLQTILEDIE 1104

Query: 67   RLSLSFNSVIFCFCHRSCNVVADHIAKNAKSCYLNVDWLVDYPTWIIYQVQNDLSSN 124
             L  SF+S IF F  RS N  +  +A+ A      +DW   +PTW+    + D+  N
Sbjct: 1105 ALKTSFDSCIFSFVPRSANGYSHEVAQFATKVVKTIDWQASFPTWLTVLARKDMGGN 1161

BLAST of HG10014341 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.7e-06
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 15  AEILVVREGLRFASNFPNMNLMVESDSKQTIDLIHDDDIWASSADCWLEDIKRLSLSFNS 74
           AE+  +R  +   S F    ++ ESDS+  I+++++D+IW S     ++D++RL   F  
Sbjct: 473 AELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKPT-IQDLQRLLSQFTE 532

Query: 75  VIFCFCHRSCNVVADHIAKNAKSCYLNVD 104
           V F F  R  N +A+ +A+ + S +LN D
Sbjct: 533 VKFVFIPREGNTLAERVARESLS-FLNYD 559

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158489.13.2e-0932.17uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_027103277.16.1e-0833.63uncharacterized protein LOC113724589 [Coffea arabica][more]
XP_022158377.11.8e-0736.28uncharacterized protein LOC111024874 [Momordica charantia][more]
VAH20608.16.7e-0734.58unnamed protein product [Triticum turgidum subsp. durum][more]
XP_027101192.11.1e-0635.71uncharacterized protein LOC113720678 [Coffea arabica] >XP_027115614.1 uncharacte... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZK31.6e-0932.17uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P6VMX32.9e-0833.63uncharacterized protein LOC113724589 OS=Coffea arabica OX=13443 GN=LOC113724589 ... [more]
A0A6J1DX308.5e-0836.28uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P6VGX45.5e-0735.71uncharacterized protein LOC113720678 OS=Coffea arabica OX=13443 GN=LOC113720678 ... [more]
A0A6P6T0671.2e-0628.21uncharacterized protein LOC113696490 OS=Coffea arabica OX=13443 GN=LOC113696490 ... [more]
Match NameE-valueIdentityDescription
AT4G29090.12.7e-0632.58Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 13..99
e-value: 4.6E-7
score: 31.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 13..95
e-value: 1.8E-13
score: 50.4
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 15..93
e-value: 1.9652E-17
score: 70.4208
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 14..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10014341.1HG10014341.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity